Wall clock time and date at job start Mon Mar 30 2020 01:49:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.38620 * 120.79905 * 2 1 4 4 N 1.32317 * 119.10183 * 180.02562 * 3 2 1 5 5 C 1.31807 * 120.81769 * 359.97438 * 4 3 2 6 6 N 1.31779 * 121.75593 * 359.97438 * 5 4 3 7 7 C 1.32345 * 120.81822 * 359.70829 * 6 5 4 8 8 C 1.50706 * 120.44681 * 180.28583 * 7 6 5 9 9 H 1.09005 * 109.46511 * 195.28595 * 8 7 6 10 10 N 1.46902 * 109.47112 * 315.28164 * 8 7 6 11 11 C 1.50694 * 109.47020 * 75.28447 * 8 7 6 12 12 H 1.08000 * 120.00327 * 359.97438 * 11 8 7 13 13 C 1.37880 * 119.99712 * 179.97438 * 11 8 7 14 14 N 1.31508 * 120.00386 * 359.97438 * 13 11 8 15 15 Si 1.86802 * 119.99967 * 179.97438 * 13 11 8 16 16 H 1.48506 * 109.47206 * 59.99702 * 15 13 11 17 17 H 1.48495 * 109.47214 * 180.02562 * 15 13 11 18 18 H 1.48504 * 109.47220 * 300.00293 * 15 13 11 19 19 H 1.09002 * 109.47152 * 90.00260 * 1 2 3 20 20 H 1.09001 * 109.46980 * 330.00361 * 1 2 3 21 21 H 1.09004 * 109.47113 * 210.00342 * 1 2 3 22 22 H 1.07999 * 120.44775 * 0.02562 * 3 2 1 23 23 H 1.08006 * 119.12080 * 179.97438 * 5 4 3 24 24 H 1.00901 * 110.99980 * 60.00059 * 10 8 7 25 25 H 1.00900 * 110.99676 * 183.95708 * 10 8 7 26 26 H 0.96995 * 120.00469 * 180.02562 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2168 1.1907 0.0000 4 7 3.5394 1.1515 -0.0005 5 6 4.1808 0.0001 -0.0005 6 7 3.5395 -1.1511 0.0005 7 6 2.2166 -1.1903 0.0073 8 6 1.4917 -2.5115 0.0149 9 1 0.4465 -2.3539 -0.2512 10 7 2.1140 -3.4171 -0.9601 11 6 1.5735 -3.1214 1.3905 12 1 2.0983 -2.6043 2.1802 13 6 0.9784 -4.3397 1.6409 14 7 0.3389 -4.9692 0.6795 15 14 1.0803 -5.0962 3.3458 16 1 0.4522 -4.1805 4.3320 17 1 0.3660 -6.3980 3.3533 18 1 2.5045 -5.3115 3.7075 19 1 -0.3633 0.0000 -1.0277 20 1 -0.3633 0.8900 0.5138 21 1 -0.3633 -0.8900 0.5139 22 1 1.6973 2.1375 0.0004 23 1 5.2609 0.0000 -0.0014 24 1 3.0842 -3.5791 -0.7352 25 1 1.6067 -4.2871 -1.0206 26 1 -0.0801 -5.8260 0.8557 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260529358.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:49:54 Heat of formation + Delta-G solvation = 34.651053 kcal Electronic energy + Delta-G solvation = -11841.284921 eV Core-core repulsion = 9726.520722 eV Total energy + Delta-G solvation = -2114.764200 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 193.091 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -40.36176 -35.27511 -33.12994 -32.63092 -30.66187 -27.03869 -26.28037 -24.21515 -22.15082 -20.70508 -17.16770 -16.65989 -16.03550 -14.71666 -14.26508 -13.97588 -13.80632 -13.06786 -12.80869 -12.48058 -12.14950 -11.93494 -11.22440 -11.03291 -10.88558 -10.29039 -10.26530 -9.92041 -9.73229 -8.74976 -8.51354 -8.41237 -7.24117 -6.16391 -4.32956 1.57654 1.84014 3.21125 3.26009 3.29742 4.25461 4.50339 4.71076 4.91515 5.06259 5.25139 5.44085 5.56512 5.96950 6.06928 6.23413 6.39696 6.62430 6.73979 7.07600 7.35269 7.66319 7.75121 7.98358 8.57691 8.81011 8.90146 9.11721 9.38864 10.81369 Molecular weight = 193.09amu Principal moments of inertia in cm(-1) A = 0.045814 B = 0.011649 C = 0.011382 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 611.016017 B = 2402.984785 C = 2459.418292 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.104 4.104 2 C -0.195 4.195 3 C 0.129 3.871 4 N -0.544 5.544 5 C 0.272 3.728 6 N -0.504 5.504 7 C 0.227 3.773 8 C 0.249 3.751 9 H 0.063 0.937 10 N -0.847 5.847 11 C -0.540 4.540 12 H 0.053 0.947 13 C 0.069 3.931 14 N -0.892 5.892 15 Si 0.901 3.099 16 H -0.276 1.276 17 H -0.285 1.285 18 H -0.276 1.276 19 H 0.068 0.932 20 H 0.061 0.939 21 H 0.086 0.914 22 H 0.155 0.845 23 H 0.184 0.816 24 H 0.325 0.675 25 H 0.356 0.644 26 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.600 6.823 -0.642 6.880 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C -0.200 4.200 3 C -0.035 4.035 4 N -0.259 5.259 5 C -0.016 4.016 6 N -0.218 5.218 7 C 0.081 3.919 8 C 0.138 3.862 9 H 0.081 0.919 10 N -0.378 5.378 11 C -0.581 4.581 12 H 0.071 0.929 13 C -0.134 4.134 14 N -0.531 5.531 15 Si 0.728 3.272 16 H -0.201 1.201 17 H -0.210 1.210 18 H -0.201 1.201 19 H 0.087 0.913 20 H 0.080 0.920 21 H 0.105 0.895 22 H 0.173 0.827 23 H 0.200 0.800 24 H 0.134 0.866 25 H 0.172 0.828 26 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 1.310 7.212 -1.244 7.435 hybrid contribution -0.616 -1.003 1.859 2.200 sum 0.695 6.210 0.615 6.279 Atomic orbital electron populations 1.20670 0.89804 1.03436 1.02290 1.21540 0.99068 0.95005 1.04422 1.22885 0.89944 0.97595 0.93111 1.68261 1.10000 1.31415 1.16188 1.24796 1.00809 0.83325 0.92720 1.68260 1.10447 1.29821 1.13259 1.22453 0.88871 0.96729 0.83892 1.18114 0.92879 0.83870 0.91336 0.91942 1.59378 1.06620 1.20749 1.51030 1.21583 1.35354 1.04905 0.96221 0.92860 1.24963 0.94160 0.96716 0.97555 1.69719 1.35104 1.16070 1.32218 0.86511 0.78403 0.78338 0.83944 1.20148 1.21024 1.20126 0.91311 0.92047 0.89536 0.82732 0.79953 0.86563 0.82794 0.92209 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.69 9.33 36.01 0.34 -1.35 15 2 C -0.20 -3.74 5.91 -104.36 -0.62 -4.35 15 3 C 0.13 2.22 11.01 -17.20 -0.19 2.03 15 4 N -0.54 -9.94 10.44 -14.58 -0.15 -10.09 15 5 C 0.27 5.09 12.28 -92.16 -1.13 3.96 15 6 N -0.50 -11.02 9.85 -10.80 -0.11 -11.13 15 7 C 0.23 5.10 5.70 -82.24 -0.47 4.63 15 8 C 0.25 6.15 2.66 -70.02 -0.19 5.96 15 9 H 0.06 1.60 6.05 -51.93 -0.31 1.28 15 10 N -0.85 -20.73 9.15 -6.65 -0.06 -20.79 15 11 C -0.54 -14.46 8.71 -34.44 -0.30 -14.76 15 12 H 0.05 1.48 7.74 -52.49 -0.41 1.07 15 13 C 0.07 1.83 5.38 -17.82 -0.10 1.73 15 14 N -0.89 -23.96 11.54 55.43 0.64 -23.32 15 15 Si 0.90 20.80 29.54 -169.99 -5.02 15.78 15 16 H -0.28 -6.34 7.11 56.52 0.40 -5.94 15 17 H -0.28 -6.47 7.11 56.52 0.40 -6.07 15 18 H -0.28 -6.43 7.11 56.52 0.40 -6.03 15 19 H 0.07 1.02 8.14 -51.93 -0.42 0.60 15 20 H 0.06 0.80 8.10 -51.93 -0.42 0.38 15 21 H 0.09 1.59 6.49 -51.93 -0.34 1.25 15 22 H 0.16 2.05 8.06 -52.49 -0.42 1.62 15 23 H 0.18 2.73 8.06 -52.48 -0.42 2.31 15 24 H 0.32 7.95 8.57 -39.29 -0.34 7.61 15 25 H 0.36 9.09 7.08 -39.29 -0.28 8.81 15 26 H 0.27 6.89 8.31 -40.82 -0.34 6.55 15 LS Contribution 229.43 15.07 3.46 3.46 Total: -1.00 -28.40 229.43 -6.39 -34.79 By element: Atomic # 1 Polarization: 15.95 SS G_CDS: -2.50 Total: 13.45 kcal Atomic # 6 Polarization: 0.50 SS G_CDS: -2.65 Total: -2.15 kcal Atomic # 7 Polarization: -65.65 SS G_CDS: 0.32 Total: -65.33 kcal Atomic # 14 Polarization: 20.80 SS G_CDS: -5.02 Total: 15.78 kcal Total LS contribution 3.46 Total: 3.46 kcal Total: -28.40 -6.39 -34.79 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260529358.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.441 kcal (2) G-P(sol) polarization free energy of solvation -28.398 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 41.044 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.392 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.790 kcal (6) G-S(sol) free energy of system = (1) + (5) 34.651 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds