Wall clock time and date at job start Mon Mar 30 2020 01:49:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.38620 * 120.79905 * 2 1 4 4 N 1.32317 * 119.10183 * 180.02562 * 3 2 1 5 5 C 1.31807 * 120.81769 * 359.97438 * 4 3 2 6 6 N 1.31779 * 121.75593 * 359.97438 * 5 4 3 7 7 C 1.32345 * 120.81822 * 359.70829 * 6 5 4 8 8 C 1.50706 * 120.44681 * 180.28583 * 7 6 5 9 9 H 1.09005 * 109.46511 * 195.28595 * 8 7 6 10 10 N 1.46902 * 109.47112 * 315.28164 * 8 7 6 11 11 C 1.50694 * 109.47020 * 75.28447 * 8 7 6 12 12 H 1.08000 * 120.00327 * 359.97438 * 11 8 7 13 13 C 1.37880 * 119.99712 * 179.97438 * 11 8 7 14 14 N 1.31508 * 120.00386 * 359.97438 * 13 11 8 15 15 Si 1.86802 * 119.99967 * 179.97438 * 13 11 8 16 16 H 1.48506 * 109.47206 * 59.99702 * 15 13 11 17 17 H 1.48495 * 109.47214 * 180.02562 * 15 13 11 18 18 H 1.48504 * 109.47220 * 300.00293 * 15 13 11 19 19 H 1.09002 * 109.47152 * 90.00260 * 1 2 3 20 20 H 1.09001 * 109.46980 * 330.00361 * 1 2 3 21 21 H 1.09004 * 109.47113 * 210.00342 * 1 2 3 22 22 H 1.07999 * 120.44775 * 0.02562 * 3 2 1 23 23 H 1.08006 * 119.12080 * 179.97438 * 5 4 3 24 24 H 1.00901 * 110.99980 * 60.00059 * 10 8 7 25 25 H 1.00900 * 110.99676 * 183.95708 * 10 8 7 26 26 H 0.96995 * 120.00469 * 180.02562 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2168 1.1907 0.0000 4 7 3.5394 1.1515 -0.0005 5 6 4.1808 0.0001 -0.0005 6 7 3.5395 -1.1511 0.0005 7 6 2.2166 -1.1903 0.0073 8 6 1.4917 -2.5115 0.0149 9 1 0.4465 -2.3539 -0.2512 10 7 2.1140 -3.4171 -0.9601 11 6 1.5735 -3.1214 1.3905 12 1 2.0983 -2.6043 2.1802 13 6 0.9784 -4.3397 1.6409 14 7 0.3389 -4.9692 0.6795 15 14 1.0803 -5.0962 3.3458 16 1 0.4522 -4.1805 4.3320 17 1 0.3660 -6.3980 3.3533 18 1 2.5045 -5.3115 3.7075 19 1 -0.3633 0.0000 -1.0277 20 1 -0.3633 0.8900 0.5138 21 1 -0.3633 -0.8900 0.5139 22 1 1.6973 2.1375 0.0004 23 1 5.2609 0.0000 -0.0014 24 1 3.0842 -3.5791 -0.7352 25 1 1.6067 -4.2871 -1.0206 26 1 -0.0801 -5.8260 0.8557 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260529358.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:49:54 Heat of formation + Delta-G solvation = 14.923827 kcal Electronic energy + Delta-G solvation = -11842.140358 eV Core-core repulsion = 9726.520722 eV Total energy + Delta-G solvation = -2115.619636 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 193.091 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -41.85127 -37.07946 -34.57971 -34.38676 -32.53051 -28.49720 -28.15114 -25.95487 -23.60229 -22.42196 -18.85778 -18.44208 -17.70577 -16.54932 -15.84840 -15.74421 -15.21978 -14.70228 -14.48774 -13.89650 -13.75634 -13.52940 -12.99950 -12.88100 -12.74439 -12.07493 -12.03584 -11.57804 -11.35858 -10.73265 -10.01992 -9.94181 -9.23230 -8.17082 -6.41574 0.12802 0.32203 1.36617 1.38238 1.46164 2.33968 2.97341 3.03997 3.40183 3.44017 3.78715 4.08393 4.14878 4.59177 4.65604 4.80594 4.84076 5.09252 5.27765 5.42135 5.57284 5.69881 5.97139 6.25499 6.54328 6.85855 7.08314 7.32339 7.35594 8.78271 Molecular weight = 193.09amu Principal moments of inertia in cm(-1) A = 0.045814 B = 0.011649 C = 0.011382 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 611.016017 B = 2402.984785 C = 2459.418292 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.099 4.099 2 C -0.203 4.203 3 C 0.141 3.859 4 N -0.543 5.543 5 C 0.266 3.734 6 N -0.533 5.533 7 C 0.192 3.808 8 C 0.251 3.749 9 H 0.048 0.952 10 N -0.841 5.841 11 C -0.555 4.555 12 H 0.035 0.965 13 C 0.030 3.970 14 N -0.910 5.910 15 Si 0.958 3.042 16 H -0.273 1.273 17 H -0.276 1.276 18 H -0.279 1.279 19 H 0.081 0.919 20 H 0.098 0.902 21 H 0.056 0.944 22 H 0.202 0.798 23 H 0.215 0.785 24 H 0.322 0.678 25 H 0.347 0.653 26 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.555 8.223 -0.210 8.244 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C -0.208 4.208 3 C -0.025 4.025 4 N -0.257 5.257 5 C -0.022 4.022 6 N -0.247 5.247 7 C 0.046 3.954 8 C 0.140 3.860 9 H 0.065 0.935 10 N -0.370 5.370 11 C -0.596 4.596 12 H 0.054 0.946 13 C -0.172 4.172 14 N -0.549 5.549 15 Si 0.783 3.217 16 H -0.198 1.198 17 H -0.201 1.201 18 H -0.204 1.204 19 H 0.100 0.900 20 H 0.116 0.884 21 H 0.075 0.925 22 H 0.219 0.781 23 H 0.231 0.769 24 H 0.132 0.868 25 H 0.162 0.838 26 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 1.266 8.614 -0.817 8.745 hybrid contribution -0.583 -1.365 1.694 2.252 sum 0.684 7.249 0.877 7.334 Atomic orbital electron populations 1.20676 0.88019 1.03769 1.03212 1.21834 1.00490 0.94549 1.03901 1.23589 0.89586 0.98590 0.90716 1.68385 1.10630 1.30877 1.15801 1.25411 1.02189 0.82684 0.91914 1.68163 1.10530 1.31661 1.14369 1.22225 0.89651 0.96842 0.86671 1.17941 0.92591 0.85257 0.90215 0.93456 1.59376 1.06269 1.20217 1.51109 1.21706 1.35515 1.05437 0.96901 0.94623 1.25622 0.93802 0.97000 1.00739 1.69795 1.35275 1.16276 1.33548 0.85619 0.78090 0.77832 0.80118 1.19797 1.20071 1.20434 0.90034 0.88353 0.92453 0.78132 0.76855 0.86837 0.83795 0.91973 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -3.04 9.33 71.24 0.66 -2.37 15 2 C -0.20 -7.45 5.91 -19.69 -0.12 -7.56 15 3 C 0.14 4.37 11.01 84.71 0.93 5.30 15 4 N -0.54 -18.34 10.44 -200.04 -2.09 -20.43 15 5 C 0.27 9.52 12.28 180.89 2.22 11.74 15 6 N -0.53 -23.13 9.85 -188.08 -1.85 -24.98 15 7 C 0.19 8.60 5.70 42.56 0.24 8.84 15 8 C 0.25 12.64 2.66 43.42 0.12 12.76 15 9 H 0.05 2.50 6.05 -2.38 -0.01 2.48 15 10 N -0.84 -42.03 9.15 -174.94 -1.60 -43.63 15 11 C -0.56 -30.27 8.71 25.60 0.22 -30.05 15 12 H 0.04 2.02 7.74 -2.91 -0.02 2.00 15 13 C 0.03 1.57 5.38 84.66 0.46 2.03 15 14 N -0.91 -49.26 11.54 21.45 0.25 -49.01 15 15 Si 0.96 42.72 29.54 68.60 2.03 44.74 15 16 H -0.27 -11.94 7.11 99.48 0.71 -11.23 15 17 H -0.28 -11.81 7.11 99.48 0.71 -11.11 15 18 H -0.28 -12.49 7.11 99.48 0.71 -11.78 15 19 H 0.08 2.27 8.14 -2.39 -0.02 2.25 15 20 H 0.10 2.24 8.10 -2.39 -0.02 2.22 15 21 H 0.06 2.10 6.49 -2.38 -0.02 2.08 15 22 H 0.20 4.27 8.06 -2.91 -0.02 4.25 15 23 H 0.22 5.94 8.06 -2.91 -0.02 5.92 15 24 H 0.32 16.15 8.57 -89.69 -0.77 15.38 15 25 H 0.35 18.15 7.08 -89.69 -0.64 17.51 15 26 H 0.27 13.92 8.31 -92.71 -0.77 13.15 15 Total: -1.00 -60.78 229.43 1.28 -59.50 By element: Atomic # 1 Polarization: 33.31 SS G_CDS: -0.19 Total: 33.12 kcal Atomic # 6 Polarization: -4.05 SS G_CDS: 4.74 Total: 0.69 kcal Atomic # 7 Polarization: -132.76 SS G_CDS: -5.29 Total: -138.05 kcal Atomic # 14 Polarization: 42.72 SS G_CDS: 2.03 Total: 44.74 kcal Total: -60.78 1.28 -59.50 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260529358.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.422 kcal (2) G-P(sol) polarization free energy of solvation -60.780 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.643 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.281 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.499 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.924 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds