Wall clock time and date at job start Mon Mar 30 2020 01:49:54
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
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* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
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Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.50703 * 1
3 3 C 1.38620 * 120.79905 * 2 1
4 4 N 1.32317 * 119.10183 * 180.02562 * 3 2 1
5 5 C 1.31807 * 120.81769 * 359.97438 * 4 3 2
6 6 N 1.31779 * 121.75593 * 359.97438 * 5 4 3
7 7 C 1.32345 * 120.81822 * 359.70829 * 6 5 4
8 8 C 1.50706 * 120.44681 * 180.28583 * 7 6 5
9 9 H 1.09005 * 109.46511 * 195.28595 * 8 7 6
10 10 N 1.46902 * 109.47112 * 315.28164 * 8 7 6
11 11 C 1.50694 * 109.47020 * 75.28447 * 8 7 6
12 12 H 1.08000 * 120.00327 * 359.97438 * 11 8 7
13 13 C 1.37880 * 119.99712 * 179.97438 * 11 8 7
14 14 N 1.31508 * 120.00386 * 359.97438 * 13 11 8
15 15 Si 1.86802 * 119.99967 * 179.97438 * 13 11 8
16 16 H 1.48506 * 109.47206 * 59.99702 * 15 13 11
17 17 H 1.48495 * 109.47214 * 180.02562 * 15 13 11
18 18 H 1.48504 * 109.47220 * 300.00293 * 15 13 11
19 19 H 1.09002 * 109.47152 * 90.00260 * 1 2 3
20 20 H 1.09001 * 109.46980 * 330.00361 * 1 2 3
21 21 H 1.09004 * 109.47113 * 210.00342 * 1 2 3
22 22 H 1.07999 * 120.44775 * 0.02562 * 3 2 1
23 23 H 1.08006 * 119.12080 * 179.97438 * 5 4 3
24 24 H 1.00901 * 110.99980 * 60.00059 * 10 8 7
25 25 H 1.00900 * 110.99676 * 183.95708 * 10 8 7
26 26 H 0.96995 * 120.00469 * 180.02562 * 14 13 11
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5070 0.0000 0.0000
3 6 2.2168 1.1907 0.0000
4 7 3.5394 1.1515 -0.0005
5 6 4.1808 0.0001 -0.0005
6 7 3.5395 -1.1511 0.0005
7 6 2.2166 -1.1903 0.0073
8 6 1.4917 -2.5115 0.0149
9 1 0.4465 -2.3539 -0.2512
10 7 2.1140 -3.4171 -0.9601
11 6 1.5735 -3.1214 1.3905
12 1 2.0983 -2.6043 2.1802
13 6 0.9784 -4.3397 1.6409
14 7 0.3389 -4.9692 0.6795
15 14 1.0803 -5.0962 3.3458
16 1 0.4522 -4.1805 4.3320
17 1 0.3660 -6.3980 3.3533
18 1 2.5045 -5.3115 3.7075
19 1 -0.3633 0.0000 -1.0277
20 1 -0.3633 0.8900 0.5138
21 1 -0.3633 -0.8900 0.5139
22 1 1.6973 2.1375 0.0004
23 1 5.2609 0.0000 -0.0014
24 1 3.0842 -3.5791 -0.7352
25 1 1.6067 -4.2871 -1.0206
26 1 -0.0801 -5.8260 0.8557
RHF calculation, no. of doubly occupied orbitals= 35
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000260529358.mol2 26
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 01:49:54
Heat of formation + Delta-G solvation = 14.923827 kcal
Electronic energy + Delta-G solvation = -11842.140358 eV
Core-core repulsion = 9726.520722 eV
Total energy + Delta-G solvation = -2115.619636 eV
No. of doubly occupied orbitals = 35
Molecular weight
(most abundant/longest-lived isotopes) = 193.091 amu
Computer time = 0.19 seconds
Orbital eigenvalues (eV)
-41.85127 -37.07946 -34.57971 -34.38676 -32.53051 -28.49720 -28.15114 -25.95487
-23.60229 -22.42196 -18.85778 -18.44208 -17.70577 -16.54932 -15.84840 -15.74421
-15.21978 -14.70228 -14.48774 -13.89650 -13.75634 -13.52940 -12.99950 -12.88100
-12.74439 -12.07493 -12.03584 -11.57804 -11.35858 -10.73265 -10.01992 -9.94181
-9.23230 -8.17082 -6.41574 0.12802 0.32203 1.36617 1.38238 1.46164
2.33968 2.97341 3.03997 3.40183 3.44017 3.78715 4.08393 4.14878
4.59177 4.65604 4.80594 4.84076 5.09252 5.27765 5.42135 5.57284
5.69881 5.97139 6.25499 6.54328 6.85855 7.08314 7.32339 7.35594
8.78271
Molecular weight = 193.09amu
Principal moments of inertia in cm(-1)
A = 0.045814 B = 0.011649 C = 0.011382
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 611.016017 B = 2402.984785 C = 2459.418292
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.099 4.099
2 C -0.203 4.203
3 C 0.141 3.859
4 N -0.543 5.543
5 C 0.266 3.734
6 N -0.533 5.533
7 C 0.192 3.808
8 C 0.251 3.749
9 H 0.048 0.952
10 N -0.841 5.841
11 C -0.555 4.555
12 H 0.035 0.965
13 C 0.030 3.970
14 N -0.910 5.910
15 Si 0.958 3.042
16 H -0.273 1.273
17 H -0.276 1.276
18 H -0.279 1.279
19 H 0.081 0.919
20 H 0.098 0.902
21 H 0.056 0.944
22 H 0.202 0.798
23 H 0.215 0.785
24 H 0.322 0.678
25 H 0.347 0.653
26 H 0.271 0.729
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 0.555 8.223 -0.210 8.244
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.157 4.157
2 C -0.208 4.208
3 C -0.025 4.025
4 N -0.257 5.257
5 C -0.022 4.022
6 N -0.247 5.247
7 C 0.046 3.954
8 C 0.140 3.860
9 H 0.065 0.935
10 N -0.370 5.370
11 C -0.596 4.596
12 H 0.054 0.946
13 C -0.172 4.172
14 N -0.549 5.549
15 Si 0.783 3.217
16 H -0.198 1.198
17 H -0.201 1.201
18 H -0.204 1.204
19 H 0.100 0.900
20 H 0.116 0.884
21 H 0.075 0.925
22 H 0.219 0.781
23 H 0.231 0.769
24 H 0.132 0.868
25 H 0.162 0.838
26 H 0.080 0.920
Dipole moment (debyes) X Y Z Total
from point charges 1.266 8.614 -0.817 8.745
hybrid contribution -0.583 -1.365 1.694 2.252
sum 0.684 7.249 0.877 7.334
Atomic orbital electron populations
1.20676 0.88019 1.03769 1.03212 1.21834 1.00490 0.94549 1.03901
1.23589 0.89586 0.98590 0.90716 1.68385 1.10630 1.30877 1.15801
1.25411 1.02189 0.82684 0.91914 1.68163 1.10530 1.31661 1.14369
1.22225 0.89651 0.96842 0.86671 1.17941 0.92591 0.85257 0.90215
0.93456 1.59376 1.06269 1.20217 1.51109 1.21706 1.35515 1.05437
0.96901 0.94623 1.25622 0.93802 0.97000 1.00739 1.69795 1.35275
1.16276 1.33548 0.85619 0.78090 0.77832 0.80118 1.19797 1.20071
1.20434 0.90034 0.88353 0.92453 0.78132 0.76855 0.86837 0.83795
0.91973
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 14.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.10 -3.04 9.33 71.24 0.66 -2.37 15
2 C -0.20 -7.45 5.91 -19.69 -0.12 -7.56 15
3 C 0.14 4.37 11.01 84.71 0.93 5.30 15
4 N -0.54 -18.34 10.44 -200.04 -2.09 -20.43 15
5 C 0.27 9.52 12.28 180.89 2.22 11.74 15
6 N -0.53 -23.13 9.85 -188.08 -1.85 -24.98 15
7 C 0.19 8.60 5.70 42.56 0.24 8.84 15
8 C 0.25 12.64 2.66 43.42 0.12 12.76 15
9 H 0.05 2.50 6.05 -2.38 -0.01 2.48 15
10 N -0.84 -42.03 9.15 -174.94 -1.60 -43.63 15
11 C -0.56 -30.27 8.71 25.60 0.22 -30.05 15
12 H 0.04 2.02 7.74 -2.91 -0.02 2.00 15
13 C 0.03 1.57 5.38 84.66 0.46 2.03 15
14 N -0.91 -49.26 11.54 21.45 0.25 -49.01 15
15 Si 0.96 42.72 29.54 68.60 2.03 44.74 15
16 H -0.27 -11.94 7.11 99.48 0.71 -11.23 15
17 H -0.28 -11.81 7.11 99.48 0.71 -11.11 15
18 H -0.28 -12.49 7.11 99.48 0.71 -11.78 15
19 H 0.08 2.27 8.14 -2.39 -0.02 2.25 15
20 H 0.10 2.24 8.10 -2.39 -0.02 2.22 15
21 H 0.06 2.10 6.49 -2.38 -0.02 2.08 15
22 H 0.20 4.27 8.06 -2.91 -0.02 4.25 15
23 H 0.22 5.94 8.06 -2.91 -0.02 5.92 15
24 H 0.32 16.15 8.57 -89.69 -0.77 15.38 15
25 H 0.35 18.15 7.08 -89.69 -0.64 17.51 15
26 H 0.27 13.92 8.31 -92.71 -0.77 13.15 15
Total: -1.00 -60.78 229.43 1.28 -59.50
By element:
Atomic # 1 Polarization: 33.31 SS G_CDS: -0.19 Total: 33.12 kcal
Atomic # 6 Polarization: -4.05 SS G_CDS: 4.74 Total: 0.69 kcal
Atomic # 7 Polarization: -132.76 SS G_CDS: -5.29 Total: -138.05 kcal
Atomic # 14 Polarization: 42.72 SS G_CDS: 2.03 Total: 44.74 kcal
Total: -60.78 1.28 -59.50 kcal
The number of atoms in the molecule is 26
The average number of expansion shells was 15.00
The maximum number of expansion shells was 15
The minimum number of expansion shells was 15
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000260529358.mol2 26
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 74.422 kcal
(2) G-P(sol) polarization free energy of solvation -60.780 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.643 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.281 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.499 kcal
(6) G-S(sol) free energy of system = (1) + (5) 14.924 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.19 seconds