Wall clock time and date at job start Mon Mar 30 2020 01:48:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 N 1.32152 * 120.00259 * 2 1 4 4 C 1.32126 * 120.00232 * 179.97438 * 3 2 1 5 5 C 1.38392 * 119.99805 * 0.02562 * 4 3 2 6 6 N 1.32132 * 119.99527 * 359.73545 * 5 4 3 7 7 C 1.32156 * 119.99902 * 0.52134 * 6 5 4 8 8 C 1.50692 * 119.99563 * 179.76247 * 7 6 5 9 9 H 1.09003 * 109.47087 * 194.99030 * 8 7 6 10 10 N 1.46895 * 109.47519 * 314.99363 * 8 7 6 11 11 C 1.50702 * 109.47323 * 74.99369 * 8 7 6 12 12 H 1.07999 * 119.99790 * 0.02562 * 11 8 7 13 13 C 1.37881 * 120.00069 * 179.97438 * 11 8 7 14 14 N 1.31515 * 120.00105 * 0.02562 * 13 11 8 15 15 Si 1.86794 * 119.99716 * 180.02562 * 13 11 8 16 16 H 1.48499 * 109.47453 * 60.00365 * 15 13 11 17 17 H 1.48500 * 109.47116 * 180.02562 * 15 13 11 18 18 H 1.48499 * 109.47175 * 299.99962 * 15 13 11 19 19 H 1.08999 * 109.47043 * 264.23133 * 1 2 3 20 20 H 1.08998 * 109.47107 * 24.22746 * 1 2 3 21 21 H 1.08998 * 109.47314 * 144.22784 * 1 2 3 22 22 H 1.07996 * 120.00390 * 180.02562 * 4 3 2 23 23 H 1.08000 * 120.00060 * 179.97438 * 5 4 3 24 24 H 1.00899 * 111.00165 * 60.00290 * 10 8 7 25 25 H 1.00902 * 111.00281 * 183.95524 * 10 8 7 26 26 H 0.96995 * 120.00017 * 180.02562 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 7 2.1677 1.1444 0.0000 4 6 3.4890 1.1444 0.0005 5 6 4.1809 -0.0541 0.0005 6 7 3.5201 -1.1983 0.0053 7 6 2.1986 -1.1982 -0.0004 8 6 1.4451 -2.5032 -0.0003 9 1 0.4048 -2.3221 -0.2710 10 7 2.0523 -3.4193 -0.9748 11 6 1.5066 -3.1188 1.3738 12 1 2.0378 -2.6151 2.1679 13 6 0.8837 -4.3245 1.6177 14 7 0.2364 -4.9376 0.6509 15 14 0.9595 -5.0871 3.3212 16 1 0.3455 -4.1607 4.3061 17 1 0.2170 -6.3732 3.3212 18 1 2.3764 -5.3341 3.6904 19 1 -0.3633 -0.1033 1.0225 20 1 -0.3633 0.9371 -0.4217 21 1 -0.3634 -0.8338 -0.6007 22 1 4.0291 2.0797 0.0009 23 1 5.2609 -0.0542 0.0005 24 1 3.0176 -3.6032 -0.7456 25 1 1.5264 -4.2780 -1.0404 26 1 -0.2021 -5.7856 0.8225 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260601914.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:48:42 Heat of formation + Delta-G solvation = 15.551526 kcal Electronic energy + Delta-G solvation = -11855.753803 eV Core-core repulsion = 9740.161385 eV Total energy + Delta-G solvation = -2115.592417 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 193.091 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -41.92252 -36.95724 -35.24152 -34.00366 -32.22706 -28.84443 -28.14920 -25.92462 -23.63986 -22.38590 -18.89064 -18.34993 -17.46961 -16.77813 -16.19960 -15.87167 -15.40511 -14.68842 -14.12890 -13.78145 -13.63583 -13.46517 -12.99936 -12.83941 -12.70094 -12.34775 -12.08786 -11.81048 -11.70292 -10.70194 -9.84374 -9.81212 -9.20043 -8.14649 -6.39178 0.03296 0.36915 1.37399 1.38545 1.46627 2.34984 2.91705 3.04258 3.31179 3.50559 3.75565 4.04891 4.34668 4.51871 4.54698 4.70254 4.84701 4.91440 5.15974 5.34762 5.59247 5.75258 6.00436 6.50614 6.58873 6.86856 7.09793 7.10900 7.35539 8.80233 Molecular weight = 193.09amu Principal moments of inertia in cm(-1) A = 0.046109 B = 0.011712 C = 0.011461 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 607.111833 B = 2390.151214 C = 2442.479459 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.091 4.091 2 C 0.053 3.947 3 N -0.456 5.456 4 C 0.031 3.969 5 C 0.035 3.965 6 N -0.458 5.458 7 C 0.105 3.895 8 C 0.254 3.746 9 H 0.049 0.951 10 N -0.841 5.841 11 C -0.554 4.554 12 H 0.035 0.965 13 C 0.029 3.971 14 N -0.910 5.910 15 Si 0.957 3.043 16 H -0.274 1.274 17 H -0.276 1.276 18 H -0.278 1.278 19 H 0.079 0.921 20 H 0.090 0.910 21 H 0.075 0.925 22 H 0.208 0.792 23 H 0.200 0.800 24 H 0.321 0.679 25 H 0.347 0.653 26 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.720 7.991 -0.201 8.817 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.087 4.087 3 N -0.172 5.172 4 C -0.129 4.129 5 C -0.126 4.126 6 N -0.173 5.173 7 C -0.034 4.034 8 C 0.143 3.857 9 H 0.067 0.933 10 N -0.370 5.370 11 C -0.594 4.594 12 H 0.053 0.947 13 C -0.172 4.172 14 N -0.549 5.549 15 Si 0.783 3.217 16 H -0.199 1.199 17 H -0.201 1.201 18 H -0.204 1.204 19 H 0.097 0.903 20 H 0.109 0.891 21 H 0.094 0.906 22 H 0.224 0.776 23 H 0.216 0.784 24 H 0.131 0.869 25 H 0.162 0.838 26 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 3.411 8.384 -0.798 9.086 hybrid contribution 0.214 -1.252 1.721 2.139 sum 3.626 7.132 0.923 8.054 Atomic orbital electron populations 1.20653 0.87097 1.03684 1.03431 1.22240 0.99373 0.88986 0.98055 1.68259 1.10242 1.28673 1.10038 1.24290 0.90328 1.01056 0.97273 1.24420 1.03291 0.88548 0.96310 1.68208 1.08901 1.31145 1.09014 1.22550 0.90741 0.97359 0.92786 1.17902 0.92423 0.85253 0.90154 0.93337 1.59389 1.06210 1.20321 1.51060 1.21726 1.34487 1.06334 0.96854 0.94691 1.25621 0.93871 0.97038 1.00667 1.69798 1.34530 1.17249 1.33350 0.85628 0.78055 0.77845 0.80179 1.19903 1.20085 1.20387 0.90271 0.89145 0.90598 0.77571 0.78369 0.86930 0.83813 0.92006 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -3.23 9.54 71.23 0.68 -2.55 15 2 C 0.05 2.15 6.78 42.53 0.29 2.44 15 3 N -0.46 -16.41 10.42 -183.30 -1.91 -18.32 15 4 C 0.03 0.91 11.23 84.69 0.95 1.87 15 5 C 0.03 1.11 11.23 84.68 0.95 2.06 15 6 N -0.46 -19.50 9.88 -183.29 -1.81 -21.31 15 7 C 0.11 4.81 5.66 42.53 0.24 5.05 15 8 C 0.25 12.94 2.81 43.42 0.12 13.06 15 9 H 0.05 2.58 5.62 -2.39 -0.01 2.57 15 10 N -0.84 -42.16 9.14 -174.97 -1.60 -43.76 15 11 C -0.55 -30.38 8.71 25.60 0.22 -30.16 15 12 H 0.03 1.99 7.74 -2.91 -0.02 1.97 15 13 C 0.03 1.55 5.38 84.66 0.46 2.01 15 14 N -0.91 -49.49 11.54 21.45 0.25 -49.24 15 15 Si 0.96 42.90 29.54 68.60 2.03 44.93 15 16 H -0.27 -12.08 7.11 99.48 0.71 -11.38 15 17 H -0.28 -11.88 7.11 99.48 0.71 -11.17 15 18 H -0.28 -12.48 7.11 99.48 0.71 -11.77 15 19 H 0.08 2.77 8.14 -2.39 -0.02 2.75 15 20 H 0.09 2.69 8.14 -2.39 -0.02 2.67 15 21 H 0.08 2.82 6.20 -2.39 -0.01 2.80 15 22 H 0.21 3.82 8.06 -2.91 -0.02 3.80 15 23 H 0.20 4.40 8.06 -2.91 -0.02 4.38 15 24 H 0.32 16.07 8.55 -89.69 -0.77 15.31 15 25 H 0.35 18.19 7.08 -89.69 -0.63 17.55 15 26 H 0.27 13.97 8.31 -92.71 -0.77 13.20 15 Total: -1.00 -61.93 229.09 0.68 -61.25 By element: Atomic # 1 Polarization: 32.87 SS G_CDS: -0.19 Total: 32.68 kcal Atomic # 6 Polarization: -10.13 SS G_CDS: 3.91 Total: -6.22 kcal Atomic # 7 Polarization: -127.57 SS G_CDS: -5.07 Total: -132.64 kcal Atomic # 14 Polarization: 42.90 SS G_CDS: 2.03 Total: 44.93 kcal Total: -61.93 0.68 -61.25 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260601914.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.803 kcal (2) G-P(sol) polarization free energy of solvation -61.927 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.875 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.676 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.251 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.552 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds