Wall clock time and date at job start Mon Mar 30 2020 02:02:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.08994 * 109.47269 * 2 1 4 4 C 1.50702 * 109.46842 * 119.99756 * 2 1 3 5 5 H 1.08002 * 120.00299 * 120.00437 * 4 2 1 6 6 C 1.37884 * 119.99942 * 299.71996 * 4 2 1 7 7 N 1.31514 * 119.99698 * 0.28408 * 6 4 2 8 8 Si 1.86794 * 119.99837 * 180.27476 * 6 4 2 9 9 H 1.48504 * 109.47196 * 60.00645 * 8 6 4 10 10 H 1.48504 * 109.46887 * 180.02562 * 8 6 4 11 11 H 1.48502 * 109.47679 * 300.00280 * 8 6 4 12 12 C 1.50700 * 109.47211 * 239.99329 * 2 1 3 13 13 C 1.38115 * 120.40406 * 325.00448 * 12 2 1 14 14 C 1.39619 * 118.33443 * 180.02562 * 13 12 2 15 15 N 1.38539 * 120.52872 * 179.97438 * 14 13 12 16 16 N 1.32988 * 118.94037 * 359.97438 * 14 13 12 17 17 C 1.31752 * 120.68402 * 0.02562 * 16 14 13 18 18 N 1.31792 * 121.83414 * 359.72095 * 17 16 14 19 19 H 1.09003 * 109.47532 * 180.02562 * 1 2 3 20 20 H 1.09001 * 109.47094 * 300.00451 * 1 2 3 21 21 H 1.09003 * 109.46851 * 60.00477 * 1 2 3 22 22 H 0.97005 * 119.99651 * 179.97438 * 7 6 4 23 23 H 1.07997 * 120.82881 * 0.02562 * 13 12 2 24 24 H 0.96997 * 120.00367 * 359.97438 * 15 14 13 25 25 H 0.97010 * 119.99892 * 179.97438 * 15 14 13 26 26 H 1.08002 * 119.08656 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0322 -0.7104 1.2305 5 1 2.6532 -1.5885 1.1316 6 6 1.7039 -0.2359 2.4828 7 7 0.9477 0.8334 2.6033 8 14 2.3328 -1.1119 4.0080 9 1 3.8178 -1.1113 4.0023 10 1 1.8417 -0.4090 5.2205 11 1 1.8384 -2.5122 4.0140 12 6 2.0323 -0.7105 -1.2304 13 6 1.3453 -1.7944 -1.7411 14 6 1.8497 -2.4207 -2.8825 15 7 1.1973 -3.5120 -3.4328 16 7 2.9662 -1.9529 -3.4329 17 6 3.5893 -0.9156 -2.9118 18 7 3.1362 -0.2998 -1.8383 19 1 -0.3634 -1.0277 0.0005 20 1 -0.3633 0.5139 0.8899 21 1 -0.3633 0.5138 -0.8901 22 1 0.7164 1.1670 3.4843 23 1 0.4407 -2.1485 -1.2693 24 1 0.3836 -3.8471 -3.0248 25 1 1.5544 -3.9411 -4.2262 26 1 4.4945 -0.5574 -3.3797 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260610278.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:02:38 Heat of formation + Delta-G solvation = 17.048006 kcal Electronic energy + Delta-G solvation = -11675.923767 eV Core-core repulsion = 9560.396242 eV Total energy + Delta-G solvation = -2115.527525 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 193.091 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -41.70101 -37.06635 -36.04712 -33.93300 -31.98582 -30.36316 -27.32089 -25.56589 -24.35239 -21.93791 -18.97707 -18.55009 -18.00052 -16.75594 -16.33274 -16.04160 -15.70116 -15.31536 -14.67866 -14.28698 -13.48042 -12.92183 -12.81768 -12.51351 -12.38074 -12.24274 -11.82861 -11.49620 -11.24787 -10.51810 -10.41963 -9.95473 -9.22158 -8.13211 -6.27962 0.29369 0.58978 1.42659 1.44361 1.52356 2.42134 2.52048 3.13405 3.14816 3.53251 3.62710 4.16476 4.50050 4.59778 4.86382 4.93254 5.09284 5.16957 5.51775 5.63080 5.75846 5.99270 6.10780 6.24849 6.35309 6.76396 6.96315 7.39003 7.53926 8.92017 Molecular weight = 193.09amu Principal moments of inertia in cm(-1) A = 0.048616 B = 0.010292 C = 0.010249 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 575.800918 B = 2719.776561 C = 2731.449056 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C 0.081 3.919 3 H 0.011 0.989 4 C -0.523 4.523 5 H 0.043 0.957 6 C 0.020 3.980 7 N -0.912 5.912 8 Si 0.959 3.041 9 H -0.277 1.277 10 H -0.278 1.278 11 H -0.268 1.268 12 C 0.218 3.782 13 C -0.296 4.296 14 C 0.429 3.571 15 N -0.820 5.820 16 N -0.603 5.603 17 C 0.323 3.677 18 N -0.595 5.595 19 H 0.045 0.955 20 H 0.066 0.934 21 H 0.026 0.974 22 H 0.265 0.735 23 H 0.147 0.853 24 H 0.422 0.578 25 H 0.414 0.586 26 H 0.221 0.779 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.882 -7.408 -8.664 11.434 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C 0.062 3.938 3 H 0.029 0.971 4 C -0.561 4.561 5 H 0.061 0.939 6 C -0.179 4.179 7 N -0.550 5.550 8 Si 0.784 3.216 9 H -0.203 1.203 10 H -0.203 1.203 11 H -0.193 1.193 12 C 0.078 3.922 13 C -0.323 4.323 14 C 0.182 3.818 15 N -0.366 5.366 16 N -0.330 5.330 17 C 0.033 3.967 18 N -0.314 5.314 19 H 0.064 0.936 20 H 0.084 0.916 21 H 0.045 0.955 22 H 0.075 0.925 23 H 0.165 0.835 24 H 0.254 0.746 25 H 0.245 0.755 26 H 0.237 0.763 Dipole moment (debyes) X Y Z Total from point charges -0.193 -6.951 -8.921 11.310 hybrid contribution -0.535 -0.684 1.143 1.436 sum -0.728 -7.635 -7.777 10.923 Atomic orbital electron populations 1.21657 0.95916 1.00103 1.00211 1.17711 0.93807 0.94277 0.88014 0.97121 1.21019 1.31976 1.12311 0.90809 0.93891 1.25662 0.95042 0.95613 1.01596 1.69989 1.37019 1.23562 1.24453 0.85599 0.78541 0.78907 0.78536 1.20275 1.20273 1.19279 1.22021 0.87474 0.90228 0.92443 1.22017 1.06753 1.02553 1.01009 1.18691 0.88081 0.87125 0.87882 1.41987 1.30015 1.30796 1.33766 1.67978 1.10727 1.18127 1.36132 1.25222 0.97564 0.86027 0.87839 1.68307 1.15923 1.34866 1.12349 0.93576 0.91561 0.95452 0.92528 0.83499 0.74556 0.75472 0.76287 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.75 8.42 71.98 0.61 -5.14 15 2 C 0.08 4.28 2.65 -12.29 -0.03 4.24 15 3 H 0.01 0.63 8.14 -2.39 -0.02 0.62 15 4 C -0.52 -29.44 8.54 25.60 0.22 -29.22 15 5 H 0.04 2.45 7.74 -2.91 -0.02 2.43 15 6 C 0.02 1.13 5.31 84.66 0.45 1.58 15 7 N -0.91 -52.03 11.33 21.45 0.24 -51.79 15 8 Si 0.96 43.56 29.54 68.60 2.03 45.59 15 9 H -0.28 -12.56 7.11 99.48 0.71 -11.85 15 10 H -0.28 -12.16 7.11 99.48 0.71 -11.45 15 11 H -0.27 -11.69 7.11 99.48 0.71 -10.99 15 12 C 0.22 10.13 5.75 42.42 0.24 10.37 15 13 C -0.30 -11.50 9.12 22.57 0.21 -11.29 15 14 C 0.43 14.17 7.82 133.16 1.04 15.21 15 15 N -0.82 -17.89 9.06 -55.09 -0.50 -18.38 15 16 N -0.60 -20.76 10.47 -197.62 -2.07 -22.83 15 17 C 0.32 11.67 12.28 180.90 2.22 13.89 15 18 N -0.59 -26.60 10.37 -188.33 -1.95 -28.55 15 19 H 0.05 2.00 6.58 -2.39 -0.02 1.99 15 20 H 0.07 3.47 6.08 -2.39 -0.01 3.46 15 21 H 0.03 1.16 8.14 -2.39 -0.02 1.14 15 22 H 0.27 14.32 8.31 -92.70 -0.77 13.55 15 23 H 0.15 5.28 6.43 -2.91 -0.02 5.26 15 24 H 0.42 7.04 8.84 -92.71 -0.82 6.22 15 25 H 0.41 7.25 8.95 -92.70 -0.83 6.42 15 26 H 0.22 5.94 8.06 -2.91 -0.02 5.92 15 Total: -1.00 -65.88 229.25 2.27 -63.62 By element: Atomic # 1 Polarization: 13.14 SS G_CDS: -0.43 Total: 12.71 kcal Atomic # 6 Polarization: -5.31 SS G_CDS: 4.95 Total: -0.36 kcal Atomic # 7 Polarization: -117.28 SS G_CDS: -4.28 Total: -121.56 kcal Atomic # 14 Polarization: 43.56 SS G_CDS: 2.03 Total: 45.59 kcal Total: -65.88 2.27 -63.62 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260610278.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.664 kcal (2) G-P(sol) polarization free energy of solvation -65.884 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.780 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.268 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.616 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.048 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds