Wall clock time and date at job start Mon Mar 30 2020 02:02:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09000 * 109.46843 * 2 1 4 4 C 1.50701 * 109.47066 * 240.00451 * 2 1 3 5 5 H 1.08002 * 119.99963 * 240.00331 * 4 2 1 6 6 C 1.37877 * 119.99837 * 59.99463 * 4 2 1 7 7 N 1.31507 * 120.00206 * 0.02562 * 6 4 2 8 8 Si 1.86800 * 119.99885 * 179.97438 * 6 4 2 9 9 H 1.48500 * 109.47055 * 60.00273 * 8 6 4 10 10 H 1.48497 * 109.47249 * 180.02562 * 8 6 4 11 11 H 1.48505 * 109.47206 * 300.00744 * 8 6 4 12 12 C 1.50700 * 109.47135 * 120.00449 * 2 1 3 13 13 C 1.38114 * 120.39985 * 34.97374 * 12 2 1 14 14 C 1.39628 * 118.33263 * 180.02562 * 13 12 2 15 15 N 1.38546 * 120.53117 * 180.02562 * 14 13 12 16 16 N 1.32991 * 118.93555 * 359.74480 * 14 13 12 17 17 C 1.31746 * 120.68704 * 0.53387 * 16 14 13 18 18 N 1.31791 * 121.83270 * 359.44531 * 17 16 14 19 19 H 1.09005 * 109.47199 * 179.97438 * 1 2 3 20 20 H 1.09006 * 109.47565 * 299.99378 * 1 2 3 21 21 H 1.09005 * 109.47536 * 59.99451 * 1 2 3 22 22 H 0.97005 * 120.00331 * 179.97438 * 7 6 4 23 23 H 1.08005 * 120.83830 * 0.04955 * 13 12 2 24 24 H 0.97002 * 120.00106 * 0.02562 * 15 14 13 25 25 H 0.96999 * 119.99780 * 180.02562 * 15 14 13 26 26 H 1.08002 * 119.08719 * 179.72750 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7103 -1.2305 5 1 2.6532 -1.5885 -1.1315 6 6 1.6991 -0.2392 -2.4827 7 7 0.9434 0.8303 -2.6033 8 14 2.3223 -1.1192 -4.0080 9 1 1.8279 -2.5195 -4.0083 10 1 1.8277 -0.4189 -5.2205 11 1 3.8074 -1.1187 -4.0078 12 6 2.0323 -0.7105 1.2304 13 6 1.3450 -1.7940 1.7413 14 6 1.8487 -2.4197 2.8834 15 7 1.1961 -3.5107 3.4341 16 7 2.9681 -1.9550 3.4309 17 6 3.5885 -0.9147 2.9127 18 7 3.1387 -0.3026 1.8357 19 1 -0.3634 -1.0277 -0.0005 20 1 -0.3634 0.5137 0.8901 21 1 -0.3634 0.5139 -0.8899 22 1 0.7093 1.1620 -3.4843 23 1 0.4407 -2.1488 1.2691 24 1 0.3826 -3.8461 3.0258 25 1 1.5527 -3.9392 4.2279 26 1 4.4933 -0.5562 3.3809 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260610305.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:02:41 Heat of formation + Delta-G solvation = 37.440151 kcal Electronic energy + Delta-G solvation = -11675.454185 eV Core-core repulsion = 9560.810929 eV Total energy + Delta-G solvation = -2114.643255 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 193.091 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -40.18967 -35.43410 -34.45856 -32.10383 -30.37167 -28.73259 -25.29684 -23.90416 -22.80496 -20.17975 -17.55369 -16.90321 -16.14789 -15.19452 -14.63055 -14.47715 -14.16407 -13.90450 -12.82039 -12.45264 -11.53910 -11.23731 -10.94096 -10.79826 -10.53929 -10.35498 -9.94221 -9.81658 -9.44877 -8.67842 -8.47563 -8.32414 -7.87305 -6.05208 -4.12008 1.81778 2.12125 3.30855 3.34998 3.38685 3.73810 4.38208 4.69289 4.92187 5.14985 5.28075 5.57593 6.07215 6.18218 6.42820 6.78448 6.87096 7.05374 7.17981 7.40021 7.59236 7.64236 7.80772 8.00310 8.21523 8.28989 8.87851 9.03600 9.51659 11.00984 Molecular weight = 193.09amu Principal moments of inertia in cm(-1) A = 0.048615 B = 0.010294 C = 0.010251 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 575.815823 B = 2719.368440 C = 2730.709350 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C 0.081 3.919 3 H 0.052 0.948 4 C -0.504 4.504 5 H 0.054 0.946 6 C 0.065 3.935 7 N -0.888 5.888 8 Si 0.898 3.102 9 H -0.277 1.277 10 H -0.286 1.286 11 H -0.276 1.276 12 C 0.245 3.755 13 C -0.289 4.289 14 C 0.422 3.578 15 N -0.848 5.848 16 N -0.603 5.603 17 C 0.321 3.679 18 N -0.558 5.558 19 H 0.031 0.969 20 H 0.011 0.989 21 H 0.091 0.909 22 H 0.263 0.737 23 H 0.138 0.862 24 H 0.407 0.593 25 H 0.399 0.601 26 H 0.185 0.815 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.884 -5.665 7.886 9.750 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C 0.062 3.938 3 H 0.070 0.930 4 C -0.542 4.542 5 H 0.072 0.928 6 C -0.137 4.137 7 N -0.526 5.526 8 Si 0.725 3.275 9 H -0.203 1.203 10 H -0.211 1.211 11 H -0.202 1.202 12 C 0.105 3.895 13 C -0.316 4.316 14 C 0.179 3.821 15 N -0.393 5.393 16 N -0.330 5.330 17 C 0.031 3.969 18 N -0.277 5.277 19 H 0.050 0.950 20 H 0.030 0.970 21 H 0.109 0.891 22 H 0.073 0.927 23 H 0.156 0.844 24 H 0.237 0.763 25 H 0.228 0.772 26 H 0.201 0.799 Dipole moment (debyes) X Y Z Total from point charges -0.155 -5.177 8.111 9.624 hybrid contribution -0.556 -1.183 -1.010 1.651 sum -0.711 -6.360 7.101 9.559 Atomic orbital electron populations 1.21854 0.97175 0.99454 1.00752 1.17901 0.92736 0.96372 0.86801 0.92986 1.20811 1.31661 1.12390 0.89387 0.92781 1.24899 0.94950 0.94977 0.98857 1.69864 1.36396 1.22633 1.23739 0.86562 0.79351 0.79608 0.81949 1.20269 1.21120 1.20161 1.22378 0.86016 0.88684 0.92448 1.22037 1.06592 1.03000 1.00012 1.18555 0.88305 0.86581 0.88669 1.42039 1.30310 1.32993 1.33934 1.67819 1.10456 1.18108 1.36580 1.24528 0.96925 0.86470 0.88961 1.68377 1.15383 1.33405 1.10506 0.94969 0.97019 0.89084 0.92704 0.84406 0.76301 0.77172 0.79877 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.16 8.41 37.16 0.31 -2.85 15 2 C 0.08 2.08 2.65 -92.92 -0.25 1.83 15 3 H 0.05 1.46 8.14 -51.93 -0.42 1.04 15 4 C -0.50 -13.93 8.55 -34.44 -0.29 -14.22 15 5 H 0.05 1.52 7.74 -52.49 -0.41 1.11 15 6 C 0.06 1.78 5.30 -17.82 -0.09 1.69 15 7 N -0.89 -24.92 11.32 55.43 0.63 -24.29 15 8 Si 0.90 21.23 29.54 -169.99 -5.02 16.21 15 9 H -0.28 -6.45 7.11 56.52 0.40 -6.05 15 10 H -0.29 -6.64 7.11 56.52 0.40 -6.24 15 11 H -0.28 -6.55 7.11 56.52 0.40 -6.15 15 12 C 0.25 5.67 5.75 -82.33 -0.47 5.20 15 13 C -0.29 -5.81 9.12 -39.11 -0.36 -6.16 15 14 C 0.42 7.52 7.82 -154.77 -1.21 6.31 15 15 N -0.85 -10.79 9.06 31.24 0.28 -10.51 15 16 N -0.60 -11.14 10.47 -13.81 -0.14 -11.29 15 17 C 0.32 6.06 12.28 -92.20 -1.13 4.92 15 18 N -0.56 -12.48 10.37 -10.88 -0.11 -12.59 15 19 H 0.03 0.70 6.58 -51.93 -0.34 0.36 15 20 H 0.01 0.23 8.14 -51.93 -0.42 -0.19 15 21 H 0.09 2.34 6.07 -51.93 -0.32 2.02 15 22 H 0.26 7.03 8.31 -40.82 -0.34 6.69 15 23 H 0.14 2.59 6.43 -52.48 -0.34 2.25 15 24 H 0.41 4.17 8.84 -40.82 -0.36 3.81 15 25 H 0.40 4.31 8.95 -40.82 -0.37 3.94 15 26 H 0.18 2.70 8.06 -52.49 -0.42 2.28 15 LS Contribution 229.23 15.07 3.45 3.45 Total: -1.00 -30.47 229.23 -6.94 -37.41 By element: Atomic # 1 Polarization: 7.41 SS G_CDS: -2.53 Total: 4.88 kcal Atomic # 6 Polarization: 0.21 SS G_CDS: -3.50 Total: -3.28 kcal Atomic # 7 Polarization: -59.32 SS G_CDS: 0.65 Total: -58.67 kcal Atomic # 14 Polarization: 21.23 SS G_CDS: -5.02 Total: 16.21 kcal Total LS contribution 3.45 Total: 3.45 kcal Total: -30.47 -6.94 -37.41 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260610305.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.851 kcal (2) G-P(sol) polarization free energy of solvation -30.472 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 44.379 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.939 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.410 kcal (6) G-S(sol) free energy of system = (1) + (5) 37.440 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds