Wall clock time and date at job start Mon Mar 30 2020 02:16:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.40894 * 126.28998 * 2 1 4 4 C 1.34850 * 107.41649 * 180.02562 * 3 2 1 5 5 C 1.50699 * 125.88843 * 180.26479 * 4 3 2 6 6 H 1.09005 * 109.46842 * 154.69221 * 5 4 3 7 7 C 1.52999 * 109.47317 * 274.69115 * 5 4 3 8 8 C 1.50696 * 109.47285 * 34.69003 * 5 4 3 9 9 H 1.07998 * 120.00259 * 0.02562 * 8 5 4 10 10 C 1.37882 * 120.00087 * 179.97438 * 8 5 4 11 11 N 1.31513 * 119.99786 * 0.02562 * 10 8 5 12 12 Si 1.86798 * 119.99889 * 180.02562 * 10 8 5 13 13 H 1.48497 * 109.47521 * 359.97438 * 12 10 8 14 14 H 1.48498 * 109.47140 * 120.00242 * 12 10 8 15 15 H 1.48501 * 109.46837 * 239.99857 * 12 10 8 16 16 N 1.36345 * 108.21864 * 0.02562 * 4 3 2 17 17 C 1.46494 * 125.63345 * 179.97438 * 16 4 3 18 18 C 1.34846 * 126.29247 * 180.02562 * 2 1 3 19 19 H 1.09004 * 109.46915 * 269.99587 * 1 2 3 20 20 H 1.09000 * 109.47343 * 29.99578 * 1 2 3 21 21 H 1.09000 * 109.47317 * 149.99486 * 1 2 3 22 22 H 1.08004 * 126.29068 * 0.04164 * 3 2 1 23 23 H 1.09000 * 109.47030 * 59.99772 * 7 5 4 24 24 H 1.08996 * 109.47764 * 180.02562 * 7 5 4 25 25 H 1.09002 * 109.47123 * 300.00127 * 7 5 4 26 26 H 0.96998 * 119.99969 * 179.97438 * 11 10 8 27 27 H 1.08996 * 109.47505 * 90.00032 * 17 16 4 28 28 H 1.09006 * 109.47388 * 210.00100 * 17 16 4 29 29 H 1.09005 * 109.47482 * 329.99489 * 17 16 4 30 30 H 1.08003 * 125.89298 * 359.93516 * 18 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3409 1.1356 0.0000 4 6 3.6169 0.6994 -0.0006 5 6 4.8477 1.5689 0.0049 6 1 5.6800 1.0176 0.4426 7 6 5.1979 1.9662 -1.4306 8 6 4.5831 2.8092 0.8189 9 1 3.6201 2.9532 1.2861 10 6 5.5708 3.7596 0.9683 11 7 6.7436 3.5839 0.3998 12 14 5.2429 5.2966 1.9780 13 1 3.8559 5.2550 2.5068 14 1 6.2029 5.3598 3.1092 15 1 5.4092 6.4972 1.1200 16 7 3.6013 -0.6639 -0.0015 17 6 4.7821 -1.5309 -0.0029 18 6 2.3051 -1.0869 -0.0005 19 1 -0.3633 -0.0001 1.0277 20 1 -0.3634 0.8900 -0.5138 21 1 -0.3634 -0.8899 -0.5139 22 1 2.0176 2.1662 0.0006 23 1 4.3656 2.5174 -1.8683 24 1 6.0884 2.5947 -1.4268 25 1 5.3893 1.0692 -2.0194 26 1 7.4384 4.2527 0.5046 27 1 5.0757 -1.7467 1.0244 28 1 4.5479 -2.4631 -0.5173 29 1 5.6014 -1.0283 -0.5170 30 1 1.9747 -2.1151 0.0000 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260646790.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:16:11 Heat of formation + Delta-G solvation = 33.099743 kcal Electronic energy + Delta-G solvation = -12049.168520 eV Core-core repulsion = 10037.877394 eV Total energy + Delta-G solvation = -2011.291126 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 193.116 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -40.39580 -34.24249 -32.91318 -30.92824 -28.81293 -26.41805 -25.06125 -24.32762 -21.41803 -19.04619 -17.91888 -16.03796 -15.75441 -14.57659 -14.45486 -13.48806 -12.87830 -12.78346 -12.45998 -12.17983 -12.00539 -11.71476 -11.28568 -11.19209 -10.94723 -10.72833 -10.65407 -10.34546 -10.05123 -9.59630 -8.87419 -8.36306 -7.57243 -6.93556 -5.99914 -4.03995 3.11849 3.31786 3.39530 3.45267 3.78049 3.92718 4.46894 5.30286 5.32771 5.65720 5.66997 5.85095 5.88304 6.06390 6.19235 6.20375 6.47137 6.66573 6.83849 7.02428 7.17132 7.24833 7.29866 7.61042 7.82532 8.02488 8.06160 8.20023 8.31271 8.53731 8.99090 9.60310 11.07156 Molecular weight = 193.12amu Principal moments of inertia in cm(-1) A = 0.040527 B = 0.011564 C = 0.009798 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 690.735726 B = 2420.776663 C = 2856.994838 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 C -0.177 4.177 3 C -0.205 4.205 4 C 0.074 3.926 5 C 0.101 3.899 6 H 0.029 0.971 7 C -0.128 4.128 8 C -0.499 4.499 9 H 0.064 0.936 10 C 0.058 3.942 11 N -0.894 5.894 12 Si 0.895 3.105 13 H -0.272 1.272 14 H -0.285 1.285 15 H -0.284 1.284 16 N -0.458 5.458 17 C 0.079 3.921 18 C -0.052 4.052 19 H 0.051 0.949 20 H 0.055 0.945 21 H 0.048 0.952 22 H 0.129 0.871 23 H 0.031 0.969 24 H 0.086 0.914 25 H 0.003 0.997 26 H 0.259 0.741 27 H 0.063 0.937 28 H 0.070 0.930 29 H 0.083 0.917 30 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.232 -7.464 -1.252 9.201 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.185 4.185 3 C -0.228 4.228 4 C -0.038 4.038 5 C 0.082 3.918 6 H 0.047 0.953 7 C -0.186 4.186 8 C -0.538 4.538 9 H 0.082 0.918 10 C -0.142 4.142 11 N -0.534 5.534 12 Si 0.723 3.277 13 H -0.196 1.196 14 H -0.211 1.211 15 H -0.210 1.210 16 N -0.135 5.135 17 C -0.063 4.063 18 C -0.180 4.180 19 H 0.070 0.930 20 H 0.074 0.926 21 H 0.067 0.933 22 H 0.147 0.853 23 H 0.050 0.950 24 H 0.105 0.895 25 H 0.022 0.978 26 H 0.069 0.931 27 H 0.082 0.918 28 H 0.089 0.911 29 H 0.101 0.899 30 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges -4.766 -7.616 -1.269 9.073 hybrid contribution -0.045 0.723 0.560 0.916 sum -4.811 -6.893 -0.709 8.436 Atomic orbital electron populations 1.20010 0.91421 1.00822 1.00466 1.19445 0.94664 0.93350 1.11031 1.20469 0.91456 0.97633 1.13288 1.21454 0.98614 0.80895 1.02794 1.17415 0.87661 0.92350 0.94351 0.95327 1.21751 1.02603 0.98455 0.95836 1.21183 0.99366 1.02951 1.30256 0.91819 1.24961 0.95046 0.98352 0.95862 1.69892 1.03862 1.35316 1.44319 0.86477 0.78407 0.82926 0.79907 1.19620 1.21126 1.21034 1.43927 1.05287 1.06367 1.57874 1.21827 0.87982 0.94086 1.02444 1.21224 0.82933 0.98023 1.15784 0.92999 0.92613 0.93301 0.85290 0.94975 0.89516 0.97752 0.93071 0.91793 0.91107 0.89866 0.83714 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.07 10.38 36.00 0.37 -0.70 16 2 C -0.18 -3.47 6.14 -104.82 -0.64 -4.11 16 3 C -0.21 -4.67 9.68 -39.78 -0.38 -5.06 16 4 C 0.07 1.72 5.82 -81.79 -0.48 1.25 16 5 C 0.10 2.61 2.30 -92.93 -0.21 2.39 16 6 H 0.03 0.78 7.48 -51.93 -0.39 0.39 16 7 C -0.13 -3.18 8.95 37.16 0.33 -2.85 16 8 C -0.50 -13.90 8.24 -34.44 -0.28 -14.19 16 9 H 0.06 1.79 6.80 -52.49 -0.36 1.43 16 10 C 0.06 1.62 5.30 -17.82 -0.09 1.53 16 11 N -0.89 -25.45 11.32 55.43 0.63 -24.82 16 12 Si 0.89 21.51 29.54 -169.99 -5.02 16.49 16 13 H -0.27 -6.48 7.11 56.52 0.40 -6.08 16 14 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 15 H -0.28 -6.77 7.11 56.52 0.40 -6.36 16 16 N -0.46 -9.14 3.15 -119.90 -0.38 -9.52 16 17 C 0.08 1.24 10.70 59.84 0.64 1.88 16 18 C -0.05 -0.96 11.35 -16.75 -0.19 -1.15 16 19 H 0.05 0.75 8.14 -51.93 -0.42 0.32 16 20 H 0.05 0.82 8.14 -51.93 -0.42 0.40 16 21 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 22 H 0.13 2.99 7.63 -52.48 -0.40 2.59 16 23 H 0.03 0.78 8.14 -51.93 -0.42 0.36 16 24 H 0.09 2.31 6.07 -51.93 -0.32 2.00 16 25 H 0.00 0.08 8.14 -51.93 -0.42 -0.34 16 26 H 0.26 7.02 8.31 -40.82 -0.34 6.68 16 27 H 0.06 0.94 8.14 -51.93 -0.42 0.51 16 28 H 0.07 0.87 8.14 -51.93 -0.42 0.45 16 29 H 0.08 1.35 7.53 -51.93 -0.39 0.96 16 30 H 0.15 2.16 8.06 -52.48 -0.42 1.73 16 LS Contribution 253.05 15.07 3.81 3.81 Total: -1.00 -29.94 253.05 -6.27 -36.21 By element: Atomic # 1 Polarization: 3.22 SS G_CDS: -4.37 Total: -1.15 kcal Atomic # 6 Polarization: -20.07 SS G_CDS: -0.94 Total: -21.01 kcal Atomic # 7 Polarization: -34.59 SS G_CDS: 0.25 Total: -34.34 kcal Atomic # 14 Polarization: 21.51 SS G_CDS: -5.02 Total: 16.49 kcal Total LS contribution 3.81 Total: 3.81 kcal Total: -29.94 -6.27 -36.21 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260646790.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.307 kcal (2) G-P(sol) polarization free energy of solvation -29.942 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 39.365 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.265 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.207 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.100 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds