Wall clock time and date at job start Mon Mar 30 2020 02:16:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.40894 * 126.28998 * 2 1 4 4 C 1.34850 * 107.41649 * 180.02562 * 3 2 1 5 5 C 1.50699 * 125.88843 * 180.26479 * 4 3 2 6 6 H 1.09005 * 109.46842 * 154.69221 * 5 4 3 7 7 C 1.52999 * 109.47317 * 274.69115 * 5 4 3 8 8 C 1.50696 * 109.47285 * 34.69003 * 5 4 3 9 9 H 1.07998 * 120.00259 * 0.02562 * 8 5 4 10 10 C 1.37882 * 120.00087 * 179.97438 * 8 5 4 11 11 N 1.31513 * 119.99786 * 0.02562 * 10 8 5 12 12 Si 1.86798 * 119.99889 * 180.02562 * 10 8 5 13 13 H 1.48497 * 109.47521 * 359.97438 * 12 10 8 14 14 H 1.48498 * 109.47140 * 120.00242 * 12 10 8 15 15 H 1.48501 * 109.46837 * 239.99857 * 12 10 8 16 16 N 1.36345 * 108.21864 * 0.02562 * 4 3 2 17 17 C 1.46494 * 125.63345 * 179.97438 * 16 4 3 18 18 C 1.34846 * 126.29247 * 180.02562 * 2 1 3 19 19 H 1.09004 * 109.46915 * 269.99587 * 1 2 3 20 20 H 1.09000 * 109.47343 * 29.99578 * 1 2 3 21 21 H 1.09000 * 109.47317 * 149.99486 * 1 2 3 22 22 H 1.08004 * 126.29068 * 0.04164 * 3 2 1 23 23 H 1.09000 * 109.47030 * 59.99772 * 7 5 4 24 24 H 1.08996 * 109.47764 * 180.02562 * 7 5 4 25 25 H 1.09002 * 109.47123 * 300.00127 * 7 5 4 26 26 H 0.96998 * 119.99969 * 179.97438 * 11 10 8 27 27 H 1.08996 * 109.47505 * 90.00032 * 17 16 4 28 28 H 1.09006 * 109.47388 * 210.00100 * 17 16 4 29 29 H 1.09005 * 109.47482 * 329.99489 * 17 16 4 30 30 H 1.08003 * 125.89298 * 359.93516 * 18 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3409 1.1356 0.0000 4 6 3.6169 0.6994 -0.0006 5 6 4.8477 1.5689 0.0049 6 1 5.6800 1.0176 0.4426 7 6 5.1979 1.9662 -1.4306 8 6 4.5831 2.8092 0.8189 9 1 3.6201 2.9532 1.2861 10 6 5.5708 3.7596 0.9683 11 7 6.7436 3.5839 0.3998 12 14 5.2429 5.2966 1.9780 13 1 3.8559 5.2550 2.5068 14 1 6.2029 5.3598 3.1092 15 1 5.4092 6.4972 1.1200 16 7 3.6013 -0.6639 -0.0015 17 6 4.7821 -1.5309 -0.0029 18 6 2.3051 -1.0869 -0.0005 19 1 -0.3633 -0.0001 1.0277 20 1 -0.3634 0.8900 -0.5138 21 1 -0.3634 -0.8899 -0.5139 22 1 2.0176 2.1662 0.0006 23 1 4.3656 2.5174 -1.8683 24 1 6.0884 2.5947 -1.4268 25 1 5.3893 1.0692 -2.0194 26 1 7.4384 4.2527 0.5046 27 1 5.0757 -1.7467 1.0244 28 1 4.5479 -2.4631 -0.5173 29 1 5.6014 -1.0283 -0.5170 30 1 1.9747 -2.1151 0.0000 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260646790.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:16:11 Heat of formation + Delta-G solvation = 16.635104 kcal Electronic energy + Delta-G solvation = -12049.882480 eV Core-core repulsion = 10037.877394 eV Total energy + Delta-G solvation = -2012.005086 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 193.116 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -41.95544 -36.25131 -34.33493 -32.92863 -30.24332 -27.99807 -27.17743 -25.73289 -23.30141 -20.66867 -19.53336 -18.04104 -17.44005 -16.39065 -16.01413 -15.16532 -14.71180 -14.01216 -13.94834 -13.70879 -13.60589 -13.37968 -12.99848 -12.87153 -12.69020 -12.46171 -12.34701 -12.19924 -12.01948 -11.50079 -10.95527 -10.49059 -9.12101 -8.54663 -8.12171 -6.23849 1.39956 1.41711 1.53622 1.59709 2.26200 2.32312 2.47900 3.16677 4.10811 4.31863 4.43130 4.46578 4.63896 4.67691 4.75510 4.80486 5.00611 5.04595 5.07660 5.17097 5.31643 5.46006 5.65099 5.67239 5.83803 5.99070 6.25121 6.42946 6.66245 6.82127 6.84503 7.43867 8.93708 Molecular weight = 193.12amu Principal moments of inertia in cm(-1) A = 0.040527 B = 0.011564 C = 0.009798 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 690.735726 B = 2420.776663 C = 2856.994838 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 C -0.196 4.196 3 C -0.226 4.226 4 C 0.038 3.962 5 C 0.105 3.895 6 H 0.006 0.994 7 C -0.115 4.115 8 C -0.519 4.519 9 H 0.052 0.948 10 C 0.013 3.987 11 N -0.918 5.918 12 Si 0.957 3.043 13 H -0.271 1.271 14 H -0.278 1.278 15 H -0.277 1.277 16 N -0.461 5.461 17 C 0.072 3.928 18 C -0.034 4.034 19 H 0.060 0.940 20 H 0.054 0.946 21 H 0.076 0.924 22 H 0.109 0.891 23 H 0.024 0.976 24 H 0.064 0.936 25 H 0.023 0.977 26 H 0.263 0.737 27 H 0.072 0.928 28 H 0.112 0.888 29 H 0.070 0.930 30 H 0.191 0.809 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.304 -8.870 -1.071 10.935 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.203 4.203 3 C -0.250 4.250 4 C -0.074 4.074 5 C 0.086 3.914 6 H 0.024 0.976 7 C -0.174 4.174 8 C -0.557 4.557 9 H 0.070 0.930 10 C -0.185 4.185 11 N -0.558 5.558 12 Si 0.782 3.218 13 H -0.195 1.195 14 H -0.204 1.204 15 H -0.203 1.203 16 N -0.137 5.137 17 C -0.069 4.069 18 C -0.162 4.162 19 H 0.079 0.921 20 H 0.073 0.927 21 H 0.095 0.905 22 H 0.127 0.873 23 H 0.043 0.957 24 H 0.083 0.917 25 H 0.042 0.958 26 H 0.072 0.928 27 H 0.091 0.909 28 H 0.131 0.869 29 H 0.088 0.912 30 H 0.208 0.792 Dipole moment (debyes) X Y Z Total from point charges -5.829 -9.036 -1.091 10.808 hybrid contribution 0.283 1.095 0.493 1.233 sum -5.546 -7.941 -0.598 9.705 Atomic orbital electron populations 1.20052 0.88588 1.02180 1.01478 1.19889 0.96795 0.92319 1.11301 1.20564 0.92428 0.97963 1.14034 1.21054 0.97651 0.82746 1.05932 1.17199 0.88228 0.91995 0.94000 0.97582 1.21569 1.01084 0.98712 0.96000 1.21410 0.99022 1.04358 1.30922 0.93018 1.25700 0.94836 1.01107 0.96845 1.69996 1.04452 1.36254 1.45049 0.85517 0.78236 0.79436 0.78582 1.19535 1.20394 1.20307 1.44160 1.07129 1.05438 1.57020 1.22097 0.86422 0.94813 1.03541 1.21952 0.81870 0.99758 1.12619 0.92080 0.92744 0.90506 0.87326 0.95727 0.91689 0.95804 0.92819 0.90896 0.86914 0.91163 0.79193 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.84 10.38 71.23 0.74 -1.10 16 2 C -0.20 -7.31 6.14 -19.99 -0.12 -7.43 16 3 C -0.23 -10.39 9.68 22.14 0.21 -10.17 16 4 C 0.04 1.80 5.82 41.08 0.24 2.04 16 5 C 0.11 5.55 2.30 -12.29 -0.03 5.53 16 6 H 0.01 0.35 7.48 -2.38 -0.02 0.33 16 7 C -0.12 -5.87 8.95 71.98 0.64 -5.22 16 8 C -0.52 -29.75 8.24 25.60 0.21 -29.54 16 9 H 0.05 3.01 6.80 -2.91 -0.02 2.99 16 10 C 0.01 0.76 5.30 84.66 0.45 1.21 16 11 N -0.92 -53.13 11.32 21.45 0.24 -52.88 16 12 Si 0.96 44.64 29.54 68.60 2.03 46.66 16 13 H -0.27 -12.48 7.11 99.48 0.71 -11.78 16 14 H -0.28 -12.61 7.11 99.48 0.71 -11.91 16 15 H -0.28 -12.58 7.11 99.48 0.71 -11.87 16 16 N -0.46 -17.63 3.15 -533.25 -1.68 -19.31 16 17 C 0.07 2.11 10.70 127.77 1.37 3.47 16 18 C -0.03 -1.14 11.35 83.21 0.94 -0.19 16 19 H 0.06 1.59 8.14 -2.39 -0.02 1.57 16 20 H 0.05 1.51 8.14 -2.39 -0.02 1.49 16 21 H 0.08 1.71 8.14 -2.39 -0.02 1.69 16 22 H 0.11 5.26 7.63 -2.91 -0.02 5.24 16 23 H 0.02 1.22 8.14 -2.39 -0.02 1.20 16 24 H 0.06 3.56 6.07 -2.39 -0.01 3.54 16 25 H 0.02 1.06 8.14 -2.39 -0.02 1.04 16 26 H 0.26 14.35 8.31 -92.71 -0.77 13.58 16 27 H 0.07 1.99 8.14 -2.39 -0.02 1.97 16 28 H 0.11 2.32 8.14 -2.38 -0.02 2.30 16 29 H 0.07 2.22 7.53 -2.38 -0.02 2.20 16 30 H 0.19 4.57 8.06 -2.91 -0.02 4.55 16 Total: -1.00 -65.13 253.05 6.35 -58.78 By element: Atomic # 1 Polarization: 7.05 SS G_CDS: 1.10 Total: 8.15 kcal Atomic # 6 Polarization: -46.06 SS G_CDS: 4.66 Total: -41.40 kcal Atomic # 7 Polarization: -70.76 SS G_CDS: -1.44 Total: -72.19 kcal Atomic # 14 Polarization: 44.64 SS G_CDS: 2.03 Total: 46.66 kcal Total: -65.13 6.35 -58.78 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260646790.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.417 kcal (2) G-P(sol) polarization free energy of solvation -65.129 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.288 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.347 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.782 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.635 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds