Wall clock time and date at job start Mon Mar 30 2020 02:36:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31521 * 1 3 3 Si 1.86798 * 119.99828 * 2 1 4 4 H 1.48503 * 109.47222 * 85.09477 * 3 2 1 5 5 H 1.48500 * 109.47390 * 325.09310 * 3 2 1 6 6 H 1.48506 * 109.47289 * 205.09234 * 3 2 1 7 7 C 1.37873 * 120.00149 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99835 * 172.97488 * 7 2 1 9 9 C 1.50697 * 120.00031 * 352.98016 * 7 2 1 10 10 H 1.08992 * 110.32968 * 53.93750 * 9 7 2 11 11 C 1.54222 * 110.36667 * 176.17350 * 9 7 2 12 12 C 1.54143 * 101.72685 * 92.35039 * 11 9 7 13 13 C 1.52800 * 105.05116 * 26.58466 * 12 11 9 14 14 C 1.40121 * 136.54037 * 162.44707 * 13 12 11 15 15 C 1.32628 * 115.63899 * 179.97438 * 14 13 12 16 16 S 1.75588 * 109.64488 * 0.05006 * 15 14 13 17 17 C 1.33822 * 109.75182 * 342.45485 * 13 12 11 18 18 H 0.96995 * 119.99771 * 359.97438 * 1 2 3 19 19 H 1.09000 * 110.97607 * 210.45916 * 11 9 7 20 20 H 1.08996 * 110.97932 * 334.20544 * 11 9 7 21 21 H 1.09003 * 110.32964 * 145.47530 * 12 11 9 22 22 H 1.08999 * 110.33124 * 267.59040 * 12 11 9 23 23 H 1.08009 * 122.18225 * 359.94855 * 14 13 12 24 24 H 1.07997 * 125.17729 * 180.02562 * 15 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.3930 2.1063 1.3950 5 1 1.5023 2.6205 -0.8012 6 1 3.5948 1.4125 -0.5938 7 6 2.0046 -1.1940 -0.0005 8 1 3.0785 -1.1974 -0.1149 9 6 1.2596 -2.4943 0.1584 10 1 0.4659 -2.5692 -0.5848 11 6 2.2287 -3.6872 0.0307 12 6 2.6246 -3.9279 1.5009 13 6 1.4437 -3.4088 2.3199 14 6 0.9703 -3.5591 3.6301 15 6 -0.1404 -2.8943 3.9188 16 16 -0.6805 -2.0049 2.5045 17 6 0.6856 -2.6073 1.5625 18 1 -0.4849 0.8400 0.0004 19 1 1.7225 -4.5585 -0.3847 20 1 3.0986 -3.4207 -0.5695 21 1 2.7733 -4.9922 1.6836 22 1 3.5300 -3.3724 1.7451 23 1 1.4767 -4.1765 4.3575 24 1 -0.6372 -2.8995 4.8777 RHF calculation, no. of doubly occupied orbitals= 32 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260924714.mol2 24 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:36:54 Heat of formation + Delta-G solvation = 27.885893 kcal Electronic energy + Delta-G solvation = -10068.078241 eV Core-core repulsion = 8265.762140 eV Total energy + Delta-G solvation = -1802.316101 eV No. of doubly occupied orbitals = 32 Molecular weight (most abundant/longest-lived isotopes) = 194.046 amu Computer time = 0.14 seconds Orbital eigenvalues (eV) -38.29777 -34.03397 -32.10465 -27.60531 -26.90611 -24.12490 -21.42285 -19.83264 -17.23920 -16.88019 -15.73220 -14.48959 -14.05936 -13.71441 -12.85637 -12.25188 -11.85279 -11.43885 -11.17004 -10.98557 -10.62112 -10.57871 -10.43066 -10.24650 -9.57923 -9.44661 -9.26641 -8.49479 -7.39572 -7.17076 -6.11423 -4.15199 2.20848 2.72841 3.26661 3.32337 3.35041 3.37091 3.73517 4.38355 5.21129 5.49563 5.87540 6.02595 6.06228 6.21479 6.48101 6.61988 6.87828 6.92801 6.98000 7.15802 7.39746 7.55715 7.75287 7.83878 8.24359 8.86543 9.47899 10.95895 Molecular weight = 194.05amu Principal moments of inertia in cm(-1) A = 0.038000 B = 0.016668 C = 0.013510 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 736.673860 B = 1679.418404 C = 2072.045556 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.876 5.876 2 C 0.065 3.935 3 Si 0.891 3.109 4 H -0.280 1.280 5 H -0.285 1.285 6 H -0.272 1.272 7 C -0.507 4.507 8 H 0.063 0.937 9 C 0.105 3.895 10 H 0.042 0.958 11 C -0.113 4.113 12 C -0.037 4.037 13 C -0.203 4.203 14 C -0.105 4.105 15 C -0.282 4.282 16 S 0.129 5.871 17 C -0.092 4.092 18 H 0.264 0.736 19 H 0.050 0.950 20 H 0.069 0.931 21 H 0.049 0.951 22 H 0.064 0.936 23 H 0.115 0.885 24 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.916 -4.671 3.759 6.065 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.513 5.513 2 C -0.138 4.138 3 Si 0.719 3.281 4 H -0.206 1.206 5 H -0.211 1.211 6 H -0.197 1.197 7 C -0.545 4.545 8 H 0.081 0.919 9 C 0.084 3.916 10 H 0.060 0.940 11 C -0.152 4.152 12 C -0.076 4.076 13 C -0.213 4.213 14 C -0.136 4.136 15 C -0.417 4.417 16 S 0.395 5.605 17 C -0.210 4.210 18 H 0.074 0.926 19 H 0.069 0.931 20 H 0.088 0.912 21 H 0.067 0.933 22 H 0.082 0.918 23 H 0.133 0.867 24 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges -0.520 -3.573 3.497 5.027 hybrid contribution 1.577 0.182 0.657 1.718 sum 1.057 -3.391 4.155 5.466 Atomic orbital electron populations 1.69901 1.05943 1.27041 1.48433 1.25007 0.94896 0.99310 0.94607 0.86577 0.80040 0.83360 0.78134 1.20588 1.21097 1.19719 1.21085 0.93655 0.89873 1.49862 0.91921 1.18210 0.93292 0.93201 0.86862 0.94009 1.22336 0.99870 0.98095 0.94945 1.20727 0.94794 0.98194 0.93910 1.20406 1.01037 1.05992 0.93831 1.19419 0.96890 1.01659 0.95679 1.25252 1.04255 1.08365 1.03859 1.84192 1.26937 1.48137 1.01263 1.26633 0.94913 0.95424 1.04078 0.92619 0.93122 0.91243 0.93276 0.91771 0.86702 0.83551 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -24.57 12.65 55.43 0.70 -23.86 14 2 C 0.07 1.79 5.32 -17.82 -0.09 1.69 14 3 Si 0.89 21.20 29.54 -169.99 -5.02 16.18 14 4 H -0.28 -6.72 7.11 56.52 0.40 -6.31 14 5 H -0.29 -6.71 7.11 56.52 0.40 -6.31 14 6 H -0.27 -6.35 7.11 56.52 0.40 -5.95 14 7 C -0.51 -13.72 8.43 -34.44 -0.29 -14.01 14 8 H 0.06 1.67 7.64 -52.49 -0.40 1.27 14 9 C 0.10 2.64 2.68 -91.59 -0.25 2.39 14 10 H 0.04 1.14 8.11 -51.93 -0.42 0.71 14 11 C -0.11 -2.35 6.61 -25.49 -0.17 -2.52 14 12 C -0.04 -0.73 6.79 -26.24 -0.18 -0.91 14 13 C -0.20 -4.49 6.54 -104.42 -0.68 -5.18 14 14 C -0.10 -2.09 10.17 -40.77 -0.41 -2.51 14 15 C -0.28 -5.55 11.18 28.83 0.32 -5.22 14 16 S 0.13 2.92 22.98 -107.50 -2.47 0.45 14 17 C -0.09 -2.24 6.24 -35.16 -0.22 -2.46 14 18 H 0.26 7.09 8.31 -40.82 -0.34 6.75 14 19 H 0.05 0.95 8.14 -51.93 -0.42 0.53 14 20 H 0.07 1.37 7.79 -51.93 -0.40 0.96 14 21 H 0.05 0.83 8.14 -51.93 -0.42 0.41 14 22 H 0.06 1.25 8.14 -51.93 -0.42 0.83 14 23 H 0.12 1.96 8.06 -52.48 -0.42 1.53 14 24 H 0.15 2.39 8.06 -52.49 -0.42 1.97 14 LS Contribution 222.85 15.07 3.36 3.36 Total: -1.00 -28.32 222.85 -7.88 -36.20 By element: Atomic # 1 Polarization: -1.12 SS G_CDS: -2.48 Total: -3.60 kcal Atomic # 6 Polarization: -26.75 SS G_CDS: -1.97 Total: -28.72 kcal Atomic # 7 Polarization: -24.57 SS G_CDS: 0.70 Total: -23.86 kcal Atomic # 14 Polarization: 21.20 SS G_CDS: -5.02 Total: 16.18 kcal Atomic # 16 Polarization: 2.92 SS G_CDS: -2.47 Total: 0.45 kcal Total LS contribution 3.36 Total: 3.36 kcal Total: -28.32 -7.88 -36.20 kcal The number of atoms in the molecule is 24 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260924714.mol2 24 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.089 kcal (2) G-P(sol) polarization free energy of solvation -28.323 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 35.766 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.880 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.203 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.886 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.14 seconds