Wall clock time and date at job start Mon Mar 30 2020 02:36:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31521 * 1 3 3 Si 1.86798 * 119.99828 * 2 1 4 4 H 1.48503 * 109.47222 * 85.09477 * 3 2 1 5 5 H 1.48500 * 109.47390 * 325.09310 * 3 2 1 6 6 H 1.48506 * 109.47289 * 205.09234 * 3 2 1 7 7 C 1.37873 * 120.00149 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99835 * 172.97488 * 7 2 1 9 9 C 1.50697 * 120.00031 * 352.98016 * 7 2 1 10 10 H 1.08992 * 110.32968 * 53.93750 * 9 7 2 11 11 C 1.54222 * 110.36667 * 176.17350 * 9 7 2 12 12 C 1.54143 * 101.72685 * 92.35039 * 11 9 7 13 13 C 1.52800 * 105.05116 * 26.58466 * 12 11 9 14 14 C 1.40121 * 136.54037 * 162.44707 * 13 12 11 15 15 C 1.32628 * 115.63899 * 179.97438 * 14 13 12 16 16 S 1.75588 * 109.64488 * 0.05006 * 15 14 13 17 17 C 1.33822 * 109.75182 * 342.45485 * 13 12 11 18 18 H 0.96995 * 119.99771 * 359.97438 * 1 2 3 19 19 H 1.09000 * 110.97607 * 210.45916 * 11 9 7 20 20 H 1.08996 * 110.97932 * 334.20544 * 11 9 7 21 21 H 1.09003 * 110.32964 * 145.47530 * 12 11 9 22 22 H 1.08999 * 110.33124 * 267.59040 * 12 11 9 23 23 H 1.08009 * 122.18225 * 359.94855 * 14 13 12 24 24 H 1.07997 * 125.17729 * 180.02562 * 15 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.3930 2.1063 1.3950 5 1 1.5023 2.6205 -0.8012 6 1 3.5948 1.4125 -0.5938 7 6 2.0046 -1.1940 -0.0005 8 1 3.0785 -1.1974 -0.1149 9 6 1.2596 -2.4943 0.1584 10 1 0.4659 -2.5692 -0.5848 11 6 2.2287 -3.6872 0.0307 12 6 2.6246 -3.9279 1.5009 13 6 1.4437 -3.4088 2.3199 14 6 0.9703 -3.5591 3.6301 15 6 -0.1404 -2.8943 3.9188 16 16 -0.6805 -2.0049 2.5045 17 6 0.6856 -2.6073 1.5625 18 1 -0.4849 0.8400 0.0004 19 1 1.7225 -4.5585 -0.3847 20 1 3.0986 -3.4207 -0.5695 21 1 2.7733 -4.9922 1.6836 22 1 3.5300 -3.3724 1.7451 23 1 1.4767 -4.1765 4.3575 24 1 -0.6372 -2.8995 4.8777 RHF calculation, no. of doubly occupied orbitals= 32 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260924714.mol2 24 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:36:54 Heat of formation + Delta-G solvation = 12.602137 kcal Electronic energy + Delta-G solvation = -10068.740995 eV Core-core repulsion = 8265.762140 eV Total energy + Delta-G solvation = -1802.978855 eV No. of doubly occupied orbitals = 32 Molecular weight (most abundant/longest-lived isotopes) = 194.046 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -39.98484 -35.79168 -34.02243 -29.43450 -28.57504 -26.04109 -23.05182 -21.57019 -18.98480 -18.71530 -17.55547 -16.44316 -15.74748 -15.31178 -14.53514 -14.12437 -13.58513 -13.17937 -12.97776 -12.81706 -12.39796 -12.26155 -12.14736 -11.98037 -11.34300 -11.23703 -11.08646 -10.55633 -9.12776 -8.89804 -8.15078 -6.26185 0.54078 1.05762 1.38162 1.40490 1.49398 1.65429 2.09150 2.40893 3.15108 3.91183 4.22360 4.47976 4.49695 4.73993 4.95315 4.96893 5.21327 5.27872 5.36307 5.46000 5.55866 5.74214 5.94578 5.99083 6.24105 6.81491 7.39696 8.90459 Molecular weight = 194.05amu Principal moments of inertia in cm(-1) A = 0.038000 B = 0.016668 C = 0.013510 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 736.673860 B = 1679.418404 C = 2072.045556 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.903 5.903 2 C 0.019 3.981 3 Si 0.949 3.051 4 H -0.282 1.282 5 H -0.282 1.282 6 H -0.264 1.264 7 C -0.524 4.524 8 H 0.061 0.939 9 C 0.095 3.905 10 H 0.002 0.998 11 C -0.107 4.107 12 C -0.033 4.033 13 C -0.194 4.194 14 C -0.114 4.114 15 C -0.256 4.256 16 S 0.077 5.923 17 C -0.140 4.140 18 H 0.262 0.738 19 H 0.066 0.934 20 H 0.075 0.925 21 H 0.085 0.915 22 H 0.067 0.933 23 H 0.155 0.845 24 H 0.185 0.815 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.122 -5.566 5.288 7.965 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.540 5.540 2 C -0.182 4.182 3 Si 0.775 3.225 4 H -0.208 1.208 5 H -0.208 1.208 6 H -0.188 1.188 7 C -0.562 4.562 8 H 0.080 0.920 9 C 0.074 3.926 10 H 0.020 0.980 11 C -0.146 4.146 12 C -0.073 4.073 13 C -0.204 4.204 14 C -0.145 4.145 15 C -0.391 4.391 16 S 0.342 5.658 17 C -0.258 4.258 18 H 0.071 0.929 19 H 0.085 0.915 20 H 0.093 0.907 21 H 0.103 0.897 22 H 0.086 0.914 23 H 0.173 0.827 24 H 0.202 0.798 Dipole moment (debyes) X Y Z Total from point charges 0.699 -4.478 5.016 6.760 hybrid contribution 1.167 0.393 0.213 1.250 sum 1.867 -4.085 5.229 6.893 Atomic orbital electron populations 1.70031 1.07100 1.27403 1.49490 1.25723 0.95641 1.02289 0.94526 0.85676 0.79236 0.79777 0.77856 1.20776 1.20792 1.18768 1.21392 0.93731 0.91173 1.49860 0.92042 1.18189 0.93078 0.94438 0.86846 0.97984 1.22299 0.99103 0.96850 0.96385 1.20774 0.93807 1.00370 0.92322 1.20968 1.00713 1.04159 0.94601 1.19783 0.97055 1.02150 0.95499 1.25642 1.03711 1.06174 1.03569 1.84250 1.27916 1.49872 1.03714 1.26538 0.96847 0.98263 1.04190 0.92896 0.91490 0.90655 0.89675 0.91417 0.82748 0.79781 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -52.06 12.65 21.45 0.27 -51.78 14 2 C 0.02 1.05 5.32 84.65 0.45 1.50 14 3 Si 0.95 43.85 29.54 68.60 2.03 45.88 14 4 H -0.28 -13.00 7.11 99.48 0.71 -12.29 14 5 H -0.28 -12.79 7.11 99.48 0.71 -12.08 14 6 H -0.26 -11.66 7.11 99.48 0.71 -10.96 14 7 C -0.52 -28.73 8.43 25.60 0.22 -28.51 14 8 H 0.06 3.28 7.64 -2.91 -0.02 3.26 14 9 C 0.09 4.86 2.68 -11.42 -0.03 4.83 14 10 H 0.00 0.12 8.11 -2.39 -0.02 0.10 14 11 C -0.11 -4.33 6.61 31.40 0.21 -4.12 14 12 C -0.03 -1.23 6.79 30.91 0.21 -1.02 14 13 C -0.19 -8.14 6.54 -19.73 -0.13 -8.27 14 14 C -0.11 -4.14 10.17 21.56 0.22 -3.92 14 15 C -0.26 -9.29 11.18 66.66 0.75 -8.54 14 16 S 0.08 3.50 22.98 -56.49 -1.30 2.20 14 17 C -0.14 -6.85 6.24 25.13 0.16 -6.70 14 18 H 0.26 14.49 8.31 -92.71 -0.77 13.72 14 19 H 0.07 2.42 8.14 -2.39 -0.02 2.40 14 20 H 0.07 2.89 7.79 -2.39 -0.02 2.87 14 21 H 0.08 2.52 8.14 -2.39 -0.02 2.50 14 22 H 0.07 2.45 8.14 -2.39 -0.02 2.43 14 23 H 0.16 4.40 8.06 -2.91 -0.02 4.38 14 24 H 0.18 5.19 8.06 -2.91 -0.02 5.17 14 Total: -1.00 -61.21 222.85 4.23 -56.98 By element: Atomic # 1 Polarization: 0.30 SS G_CDS: 1.18 Total: 1.48 kcal Atomic # 6 Polarization: -56.80 SS G_CDS: 2.05 Total: -54.75 kcal Atomic # 7 Polarization: -52.06 SS G_CDS: 0.27 Total: -51.78 kcal Atomic # 14 Polarization: 43.85 SS G_CDS: 2.03 Total: 45.88 kcal Atomic # 16 Polarization: 3.50 SS G_CDS: -1.30 Total: 2.20 kcal Total: -61.21 4.23 -56.98 kcal The number of atoms in the molecule is 24 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260924714.mol2 24 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.579 kcal (2) G-P(sol) polarization free energy of solvation -61.207 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.372 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.230 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.977 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.602 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds