Wall clock time and date at job start Mon Mar 30 2020 02:47:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86798 * 120.00042 * 2 1 4 4 H 1.48493 * 109.47326 * 90.00391 * 3 2 1 5 5 H 1.48506 * 109.46545 * 210.00141 * 3 2 1 6 6 H 1.48498 * 109.47210 * 329.99852 * 3 2 1 7 7 C 1.37879 * 119.99350 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99349 * 180.02562 * 7 2 1 9 9 C 1.50694 * 120.00472 * 359.97438 * 7 2 1 10 10 O 1.42902 * 110.29865 * 60.70135 * 9 7 2 11 11 C 1.54453 * 110.33840 * 182.97590 * 9 7 2 12 12 C 1.54465 * 101.87904 * 144.43329 * 11 9 7 13 13 C 1.51194 * 104.92877 * 334.48774 * 12 11 9 14 14 C 1.41506 * 142.39647 * 196.86157 * 13 12 11 15 15 C 1.34451 * 106.80782 * 179.97438 * 14 13 12 16 16 O 1.34193 * 108.42417 * 359.97438 * 15 14 13 17 17 C 1.34290 * 110.58478 * 16.81203 * 13 12 11 18 18 H 0.97005 * 119.99661 * 359.97438 * 1 2 3 19 19 H 0.96692 * 114.00281 * 300.70495 * 10 9 7 20 20 H 1.08996 * 110.94619 * 262.59210 * 11 9 7 21 21 H 1.09003 * 110.94606 * 26.29821 * 11 9 7 22 22 H 1.08991 * 110.36702 * 215.60992 * 12 11 9 23 23 H 1.09002 * 110.32643 * 93.33574 * 12 11 9 24 24 H 1.08008 * 126.59531 * 359.90811 * 14 13 12 25 25 H 1.07995 * 125.78672 * 179.97438 * 15 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4967 2.0464 1.4000 5 1 3.5467 1.4400 -0.7001 6 1 1.4466 2.6526 -0.7001 7 6 2.0044 -1.1941 -0.0005 8 1 3.0844 -1.1941 -0.0001 9 6 1.2509 -2.4992 -0.0005 10 8 0.4346 -2.6003 -1.1691 11 6 2.2350 -3.6873 0.0740 12 6 1.4523 -4.6942 0.9454 13 6 0.5148 -3.8457 1.7743 14 6 -0.3024 -3.8791 2.9290 15 6 -0.8694 -2.6650 3.0393 16 8 -0.4419 -1.9032 2.0206 17 6 0.4005 -2.6159 1.2473 18 1 -0.4850 0.8401 0.0004 19 1 -0.2184 -1.8923 -1.2552 20 1 2.4273 -4.0968 -0.9176 21 1 3.1654 -3.3927 0.5596 22 1 2.1342 -5.2472 1.5913 23 1 0.8858 -5.3800 0.3153 24 1 -0.4444 -4.7188 3.5934 25 1 -1.5529 -2.3553 3.8159 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260942247.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:47:25 Heat of formation + Delta-G solvation = -22.389424 kcal Electronic energy + Delta-G solvation = -12451.197796 eV Core-core repulsion = 10203.948723 eV Total energy + Delta-G solvation = -2247.249074 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 194.073 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -41.49639 -36.98296 -33.70038 -32.17389 -30.65503 -27.08638 -27.03683 -23.66698 -20.99315 -19.38065 -18.87040 -17.11064 -16.25330 -15.04108 -14.73510 -14.28079 -13.60739 -13.16640 -12.78228 -11.93108 -11.85896 -11.61899 -11.03661 -10.91895 -10.85435 -10.51862 -10.47792 -10.33628 -9.48268 -8.64260 -8.62231 -8.40325 -7.22285 -6.23476 -4.35677 2.90785 3.22754 3.29322 3.32703 3.60018 3.96523 4.28887 5.05914 5.34300 5.78885 5.89290 5.96027 6.01032 6.17676 6.45401 6.55182 6.75914 6.86493 7.08548 7.19778 7.33345 7.53019 7.73193 7.95077 8.47209 8.67695 9.27185 9.38338 10.81437 Molecular weight = 194.07amu Principal moments of inertia in cm(-1) A = 0.041775 B = 0.016525 C = 0.013813 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 670.089878 B = 1693.953534 C = 2026.588577 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.874 5.874 2 C 0.072 3.928 3 Si 0.903 3.097 4 H -0.279 1.279 5 H -0.271 1.271 6 H -0.283 1.283 7 C -0.549 4.549 8 H 0.068 0.932 9 C 0.322 3.678 10 O -0.577 6.577 11 C -0.096 4.096 12 C -0.041 4.041 13 C -0.268 4.268 14 C -0.198 4.198 15 C -0.085 4.085 16 O -0.128 6.128 17 C 0.041 3.959 18 H 0.270 0.730 19 H 0.384 0.616 20 H 0.076 0.924 21 H 0.078 0.922 22 H 0.056 0.944 23 H 0.063 0.937 24 H 0.129 0.871 25 H 0.187 0.813 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.308 -3.990 2.941 4.966 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.512 5.512 2 C -0.133 4.133 3 Si 0.730 3.270 4 H -0.205 1.205 5 H -0.196 1.196 6 H -0.209 1.209 7 C -0.586 4.586 8 H 0.087 0.913 9 C 0.282 3.718 10 O -0.386 6.386 11 C -0.134 4.134 12 C -0.079 4.079 13 C -0.269 4.269 14 C -0.217 4.217 15 C -0.153 4.153 16 O -0.021 6.021 17 C -0.013 4.013 18 H 0.080 0.920 19 H 0.235 0.765 20 H 0.095 0.905 21 H 0.097 0.903 22 H 0.075 0.925 23 H 0.081 0.919 24 H 0.147 0.853 25 H 0.204 0.796 Dipole moment (debyes) X Y Z Total from point charges 0.426 -4.093 2.773 4.962 hybrid contribution -0.153 1.270 0.605 1.415 sum 0.273 -2.823 3.378 4.411 Atomic orbital electron populations 1.69663 1.05964 1.27821 1.47720 1.25095 0.95031 0.99792 0.93366 0.86411 0.79905 0.82412 0.78257 1.20483 1.19557 1.20906 1.21701 0.93874 0.90358 1.52660 0.91339 1.17924 0.83941 0.93554 0.76349 1.86186 1.53451 1.54756 1.44239 1.22256 0.97325 0.94268 0.99525 1.20360 0.95366 0.96465 0.95680 1.21181 1.07170 0.98593 0.99978 1.20911 1.02728 0.98275 0.99826 1.23829 1.05067 0.91263 0.95142 1.84133 1.48386 1.39193 1.30396 1.25045 0.91144 0.88326 0.96788 0.91986 0.76507 0.90518 0.90346 0.92521 0.91867 0.85292 0.79631 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -24.03 10.21 55.43 0.57 -23.46 15 2 C 0.07 1.95 5.25 -17.82 -0.09 1.86 15 3 Si 0.90 20.90 29.54 -169.99 -5.02 15.88 15 4 H -0.28 -6.48 7.11 56.52 0.40 -6.08 15 5 H -0.27 -6.17 7.11 56.52 0.40 -5.77 15 6 H -0.28 -6.46 7.11 56.52 0.40 -6.06 15 7 C -0.55 -15.03 8.24 -34.44 -0.28 -15.31 15 8 H 0.07 1.82 7.63 -52.49 -0.40 1.42 15 9 C 0.32 8.37 0.92 -91.79 -0.08 8.28 15 10 O -0.58 -15.38 13.04 -35.23 -0.46 -15.84 15 11 C -0.10 -2.09 6.36 -25.20 -0.16 -2.25 15 12 C -0.04 -0.84 6.79 -26.87 -0.18 -1.02 15 13 C -0.27 -6.20 6.96 -104.53 -0.73 -6.93 15 14 C -0.20 -4.08 10.91 -39.68 -0.43 -4.51 15 15 C -0.08 -1.76 12.08 29.39 0.36 -1.41 15 16 O -0.13 -3.30 9.74 4.78 0.05 -3.26 15 17 C 0.04 1.06 6.38 -35.33 -0.23 0.83 15 18 H 0.27 7.08 8.31 -40.82 -0.34 6.74 15 19 H 0.38 10.42 7.29 45.56 0.33 10.75 15 20 H 0.08 1.54 8.10 -51.93 -0.42 1.12 15 21 H 0.08 1.61 7.79 -51.93 -0.40 1.20 15 22 H 0.06 0.99 8.14 -51.93 -0.42 0.57 15 23 H 0.06 1.21 8.14 -51.93 -0.42 0.79 15 24 H 0.13 2.20 8.06 -52.48 -0.42 1.78 15 25 H 0.19 2.96 8.06 -52.49 -0.42 2.54 15 LS Contribution 219.26 15.07 3.30 3.30 Total: -1.00 -29.71 219.26 -5.12 -34.82 By element: Atomic # 1 Polarization: 10.72 SS G_CDS: -1.72 Total: 9.00 kcal Atomic # 6 Polarization: -18.62 SS G_CDS: -1.84 Total: -20.45 kcal Atomic # 7 Polarization: -24.03 SS G_CDS: 0.57 Total: -23.46 kcal Atomic # 8 Polarization: -18.68 SS G_CDS: -0.41 Total: -19.09 kcal Atomic # 14 Polarization: 20.90 SS G_CDS: -5.02 Total: 15.88 kcal Total LS contribution 3.30 Total: 3.30 kcal Total: -29.71 -5.12 -34.82 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260942247.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.434 kcal (2) G-P(sol) polarization free energy of solvation -29.705 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.271 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.118 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.824 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.389 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds