Wall clock time and date at job start Mon Mar 30 2020 02:47:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86798 * 120.00042 * 2 1 4 4 H 1.48493 * 109.47326 * 90.00391 * 3 2 1 5 5 H 1.48506 * 109.46545 * 210.00141 * 3 2 1 6 6 H 1.48498 * 109.47210 * 329.99852 * 3 2 1 7 7 C 1.37879 * 119.99350 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99349 * 180.02562 * 7 2 1 9 9 C 1.50694 * 120.00472 * 359.97438 * 7 2 1 10 10 O 1.42902 * 110.29865 * 60.70135 * 9 7 2 11 11 C 1.54453 * 110.33840 * 182.97590 * 9 7 2 12 12 C 1.54465 * 101.87904 * 144.43329 * 11 9 7 13 13 C 1.51194 * 104.92877 * 334.48774 * 12 11 9 14 14 C 1.41506 * 142.39647 * 196.86157 * 13 12 11 15 15 C 1.34451 * 106.80782 * 179.97438 * 14 13 12 16 16 O 1.34193 * 108.42417 * 359.97438 * 15 14 13 17 17 C 1.34290 * 110.58478 * 16.81203 * 13 12 11 18 18 H 0.97005 * 119.99661 * 359.97438 * 1 2 3 19 19 H 0.96692 * 114.00281 * 300.70495 * 10 9 7 20 20 H 1.08996 * 110.94619 * 262.59210 * 11 9 7 21 21 H 1.09003 * 110.94606 * 26.29821 * 11 9 7 22 22 H 1.08991 * 110.36702 * 215.60992 * 12 11 9 23 23 H 1.09002 * 110.32643 * 93.33574 * 12 11 9 24 24 H 1.08008 * 126.59531 * 359.90811 * 14 13 12 25 25 H 1.07995 * 125.78672 * 179.97438 * 15 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4967 2.0464 1.4000 5 1 3.5467 1.4400 -0.7001 6 1 1.4466 2.6526 -0.7001 7 6 2.0044 -1.1941 -0.0005 8 1 3.0844 -1.1941 -0.0001 9 6 1.2509 -2.4992 -0.0005 10 8 0.4346 -2.6003 -1.1691 11 6 2.2350 -3.6873 0.0740 12 6 1.4523 -4.6942 0.9454 13 6 0.5148 -3.8457 1.7743 14 6 -0.3024 -3.8791 2.9290 15 6 -0.8694 -2.6650 3.0393 16 8 -0.4419 -1.9032 2.0206 17 6 0.4005 -2.6159 1.2473 18 1 -0.4850 0.8401 0.0004 19 1 -0.2184 -1.8923 -1.2552 20 1 2.4273 -4.0968 -0.9176 21 1 3.1654 -3.3927 0.5596 22 1 2.1342 -5.2472 1.5913 23 1 0.8858 -5.3800 0.3153 24 1 -0.4444 -4.7188 3.5934 25 1 -1.5529 -2.3553 3.8159 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260942247.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:47:25 Heat of formation + Delta-G solvation = -42.998753 kcal Electronic energy + Delta-G solvation = -12452.091484 eV Core-core repulsion = 10203.948723 eV Total energy + Delta-G solvation = -2248.142761 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 194.073 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -43.23731 -38.83437 -35.55600 -34.21555 -32.37151 -28.95978 -28.77992 -25.54968 -22.67680 -21.14478 -20.63237 -19.11386 -18.06120 -16.98538 -16.54377 -16.05801 -15.37244 -14.84289 -14.63555 -13.69250 -13.62529 -13.44586 -12.85846 -12.73844 -12.59930 -12.39933 -12.27712 -12.07822 -11.32701 -10.65201 -10.40007 -10.26837 -8.97493 -8.24139 -6.44047 1.17677 1.39425 1.40202 1.50736 1.90404 2.29802 2.36257 3.03256 3.72028 4.06997 4.15518 4.34714 4.41387 4.60228 4.84521 4.92031 5.07765 5.23367 5.38354 5.43729 5.55738 5.70550 5.86429 6.02778 6.60741 6.73802 7.19678 7.31264 8.79111 Molecular weight = 194.07amu Principal moments of inertia in cm(-1) A = 0.041775 B = 0.016525 C = 0.013813 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 670.089878 B = 1693.953534 C = 2026.588577 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.894 5.894 2 C 0.028 3.972 3 Si 0.964 3.036 4 H -0.279 1.279 5 H -0.265 1.265 6 H -0.278 1.278 7 C -0.575 4.575 8 H 0.065 0.935 9 C 0.301 3.699 10 O -0.586 6.586 11 C -0.094 4.094 12 C -0.037 4.037 13 C -0.266 4.266 14 C -0.201 4.201 15 C -0.083 4.083 16 O -0.165 6.165 17 C -0.015 4.015 18 H 0.270 0.730 19 H 0.376 0.624 20 H 0.087 0.913 21 H 0.085 0.915 22 H 0.089 0.911 23 H 0.074 0.926 24 H 0.169 0.831 25 H 0.231 0.769 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.615 -4.737 4.059 6.269 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.532 5.532 2 C -0.175 4.175 3 Si 0.789 3.211 4 H -0.205 1.205 5 H -0.189 1.189 6 H -0.203 1.203 7 C -0.612 4.612 8 H 0.084 0.916 9 C 0.262 3.738 10 O -0.394 6.394 11 C -0.132 4.132 12 C -0.074 4.074 13 C -0.267 4.267 14 C -0.220 4.220 15 C -0.150 4.150 16 O -0.059 6.059 17 C -0.067 4.067 18 H 0.079 0.921 19 H 0.225 0.775 20 H 0.105 0.895 21 H 0.103 0.897 22 H 0.108 0.892 23 H 0.092 0.908 24 H 0.186 0.814 25 H 0.247 0.753 Dipole moment (debyes) X Y Z Total from point charges 0.745 -4.863 3.887 6.270 hybrid contribution -0.300 1.469 0.307 1.530 sum 0.445 -3.394 4.194 5.414 Atomic orbital electron populations 1.69774 1.07002 1.28295 1.48089 1.25834 0.95858 1.02778 0.93017 0.85473 0.78909 0.78670 0.78084 1.20502 1.18939 1.20307 1.22026 0.93999 0.91850 1.53322 0.91633 1.18309 0.84568 0.94661 0.76286 1.86158 1.53410 1.54325 1.45494 1.22289 0.96857 0.93320 1.00700 1.20418 0.95383 0.95931 0.95677 1.21784 1.06742 0.97923 1.00286 1.21362 1.01742 0.99400 0.99501 1.24824 1.04657 0.91175 0.94363 1.84060 1.49131 1.40924 1.31814 1.24999 0.93671 0.90005 0.98068 0.92097 0.77481 0.89474 0.89684 0.89216 0.90792 0.81358 0.75319 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -50.10 10.21 21.45 0.22 -49.88 15 2 C 0.03 1.52 5.25 84.66 0.44 1.96 15 3 Si 0.96 43.20 29.54 68.60 2.03 45.22 15 4 H -0.28 -12.42 7.11 99.48 0.71 -11.71 15 5 H -0.27 -11.50 7.11 99.48 0.71 -10.79 15 6 H -0.28 -12.07 7.11 99.48 0.71 -11.37 15 7 C -0.57 -31.91 8.24 25.60 0.21 -31.70 15 8 H 0.07 3.53 7.63 -2.91 -0.02 3.51 15 9 C 0.30 15.77 0.92 -11.55 -0.01 15.76 15 10 O -0.59 -31.90 13.04 -148.98 -1.94 -33.85 15 11 C -0.09 -4.00 6.36 31.59 0.20 -3.80 15 12 C -0.04 -1.41 6.79 30.50 0.21 -1.20 15 13 C -0.27 -11.83 6.96 -19.80 -0.14 -11.96 15 14 C -0.20 -7.68 10.91 22.21 0.24 -7.43 15 15 C -0.08 -3.27 12.08 66.95 0.81 -2.46 15 16 O -0.16 -8.48 9.74 -5.80 -0.06 -8.54 15 17 C -0.01 -0.78 6.38 25.02 0.16 -0.62 15 18 H 0.27 14.38 8.31 -92.70 -0.77 13.61 15 19 H 0.38 21.18 7.29 -74.06 -0.54 20.64 15 20 H 0.09 3.42 8.10 -2.39 -0.02 3.40 15 21 H 0.08 3.41 7.79 -2.39 -0.02 3.39 15 22 H 0.09 2.81 8.14 -2.39 -0.02 2.79 15 23 H 0.07 2.65 8.14 -2.39 -0.02 2.63 15 24 H 0.17 4.95 8.06 -2.91 -0.02 4.93 15 25 H 0.23 6.52 8.06 -2.91 -0.02 6.49 15 Total: -1.00 -64.01 219.26 3.03 -60.97 By element: Atomic # 1 Polarization: 26.85 SS G_CDS: 0.66 Total: 27.52 kcal Atomic # 6 Polarization: -43.58 SS G_CDS: 2.13 Total: -41.45 kcal Atomic # 7 Polarization: -50.10 SS G_CDS: 0.22 Total: -49.88 kcal Atomic # 8 Polarization: -40.38 SS G_CDS: -2.00 Total: -42.38 kcal Atomic # 14 Polarization: 43.20 SS G_CDS: 2.03 Total: 45.22 kcal Total: -64.01 3.03 -60.97 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260942247.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.976 kcal (2) G-P(sol) polarization free energy of solvation -64.009 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.034 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.035 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.974 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.999 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds