Wall clock time and date at job start Mon Mar 30 2020 02:56:15
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
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* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
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Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.31507 * 1
3 3 Si 1.86800 * 120.00024 * 2 1
4 4 H 1.48494 * 109.47150 * 269.99876 * 3 2 1
5 5 H 1.48500 * 109.47037 * 30.00248 * 3 2 1
6 6 H 1.48508 * 109.47086 * 150.00022 * 3 2 1
7 7 C 1.37872 * 119.99894 * 180.02562 * 2 1 3
8 8 H 1.08005 * 120.00061 * 180.02562 * 7 2 1
9 9 C 1.50698 * 120.00329 * 0.02562 * 7 2 1
10 10 O 1.42898 * 110.37721 * 299.24679 * 9 7 2
11 11 C 1.54447 * 110.32107 * 177.02330 * 9 7 2
12 12 C 1.54440 * 101.98700 * 215.37923 * 11 9 7
13 13 C 1.51326 * 104.99374 * 25.73215 * 12 11 9
14 14 N 1.35218 * 141.94742 * 163.04727 * 13 12 11
15 15 H 0.97006 * 126.03054 * 0.03110 * 14 13 12
16 16 N 1.40002 * 107.93770 * 180.02562 * 14 13 12
17 17 C 1.30742 * 108.21316 * 359.97438 * 16 14 13
18 18 C 1.35130 * 110.30446 * 343.07256 * 13 12 11
19 19 H 0.97006 * 119.99945 * 359.97438 * 1 2 3
20 20 H 0.96696 * 114.00653 * 60.75293 * 10 9 7
21 21 H 1.08996 * 110.92239 * 97.21496 * 11 9 7
22 22 H 1.08996 * 110.93750 * 333.55694 * 11 9 7
23 23 H 1.08998 * 110.34292 * 266.85233 * 12 11 9
24 24 H 1.09004 * 110.33856 * 144.60734 * 12 11 9
25 25 H 1.07993 * 125.88354 * 179.97438 * 17 16 14
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.3151 0.0000 0.0000
3 14 2.2491 1.6177 0.0000
4 1 2.4966 2.0464 -1.4000
5 1 1.4465 2.6526 0.7001
6 1 3.5467 1.4401 0.7001
7 6 2.0044 -1.1940 -0.0005
8 1 3.0845 -1.1940 -0.0001
9 6 1.2510 -2.4991 -0.0017
10 8 0.4349 -2.6036 1.1667
11 6 2.2355 -3.6867 -0.0773
12 6 1.4535 -4.6969 -0.9452
13 6 0.5151 -3.8522 -1.7795
14 7 -0.2609 -3.8995 -2.8858
15 1 -0.3748 -4.6650 -3.4706
16 7 -0.8712 -2.6487 -3.0381
17 6 -0.4758 -1.8790 -2.0581
18 6 0.4010 -2.6147 -1.2488
19 1 -0.4850 0.8401 0.0004
20 1 -0.2333 -1.9089 1.2432
21 1 2.4303 -4.0946 0.9145
22 1 3.1647 -3.3919 -0.5649
23 1 0.8868 -5.3806 -0.3132
24 1 2.1363 -5.2522 -1.5884
25 1 -0.7726 -0.8528 -1.8998
RHF calculation, no. of doubly occupied orbitals= 35
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000260942248.mol2 25
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 02:56:15
Heat of formation + Delta-G solvation = 34.512779 kcal
Electronic energy + Delta-G solvation = -12412.260150 eV
Core-core repulsion = 10199.771292 eV
Total energy + Delta-G solvation = -2212.488858 eV
No. of doubly occupied orbitals = 35
Molecular weight
(most abundant/longest-lived isotopes) = 194.080 amu
Computer time = 0.17 seconds
Orbital eigenvalues (eV)
-40.46974 -36.39430 -33.14113 -32.05371 -30.25086 -27.21910 -26.92597 -23.56088
-20.70605 -19.93984 -18.58382 -16.96530 -16.42096 -14.96640 -14.23266 -13.90725
-13.10701 -12.86407 -12.69897 -12.24801 -11.62247 -11.47722 -10.91408 -10.82910
-10.52054 -10.46118 -10.27295 -9.91117 -9.21779 -8.52436 -8.45218 -8.15889
-7.24072 -6.13290 -4.21285 2.83768 3.27105 3.34603 3.37543 3.60365
4.03392 4.36966 5.13441 5.39212 5.65015 5.83505 5.99375 6.24129
6.28448 6.50217 6.69711 6.98230 7.05110 7.29694 7.57832 7.84347
7.89484 8.15447 8.26194 8.73981 8.81906 9.45183 9.56520 10.92606
Molecular weight = 194.08amu
Principal moments of inertia in cm(-1)
A = 0.042060 B = 0.016264 C = 0.013671
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 665.557959 B = 1721.134385 C = 2047.588442
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.894 5.894
2 C 0.072 3.928
3 Si 0.896 3.104
4 H -0.280 1.280
5 H -0.285 1.285
6 H -0.274 1.274
7 C -0.527 4.527
8 H 0.061 0.939
9 C 0.308 3.692
10 O -0.587 6.587
11 C -0.099 4.099
12 C -0.034 4.034
13 C 0.006 3.994
14 N -0.483 5.483
15 H 0.421 0.579
16 N -0.330 5.330
17 C 0.101 3.899
18 C -0.191 4.191
19 H 0.266 0.734
20 H 0.381 0.619
21 H 0.072 0.928
22 H 0.075 0.925
23 H 0.074 0.926
24 H 0.061 0.939
25 H 0.191 0.809
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 1.437 -5.293 -1.967 5.827
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.534 5.534
2 C -0.129 4.129
3 Si 0.724 3.276
4 H -0.207 1.207
5 H -0.211 1.211
6 H -0.199 1.199
7 C -0.565 4.565
8 H 0.079 0.921
9 C 0.267 3.733
10 O -0.395 6.395
11 C -0.137 4.137
12 C -0.074 4.074
13 C -0.121 4.121
14 N -0.192 5.192
15 H 0.262 0.738
16 N -0.153 5.153
17 C -0.084 4.084
18 C -0.202 4.202
19 H 0.076 0.924
20 H 0.231 0.769
21 H 0.091 0.909
22 H 0.093 0.907
23 H 0.092 0.908
24 H 0.079 0.921
25 H 0.208 0.792
Dipole moment (debyes) X Y Z Total
from point charges 0.950 -5.734 -2.874 6.484
hybrid contribution 0.425 1.163 0.084 1.241
sum 1.375 -4.570 -2.790 5.528
Atomic orbital electron populations
1.69681 1.05868 1.27120 1.50763 1.24972 0.94973 0.99224 0.93774
0.86528 0.79946 0.83002 0.78110 1.20657 1.21078 1.19872 1.21733
0.93487 0.90944 1.50311 0.92079 1.17532 0.85073 0.91775 0.78916
1.86112 1.52142 1.55922 1.45352 1.22303 0.97875 0.94932 0.98612
1.20642 0.94737 0.96658 0.95331 1.21885 0.98949 0.99970 0.91332
1.45499 1.38684 1.12536 1.22442 0.73817 1.77249 1.22543 0.90326
1.25177 1.23927 0.94590 0.99929 0.89965 1.21943 1.03769 0.91955
1.02556 0.92407 0.76892 0.90887 0.90673 0.90773 0.92078 0.79212
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 14.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.89 -23.26 8.73 55.43 0.48 -22.78 15
2 C 0.07 1.88 5.21 -17.82 -0.09 1.79 15
3 Si 0.90 20.53 29.54 -169.99 -5.02 15.51 15
4 H -0.28 -6.46 7.11 56.52 0.40 -6.06 15
5 H -0.29 -6.48 7.11 56.52 0.40 -6.08 15
6 H -0.27 -6.27 7.11 56.52 0.40 -5.86 15
7 C -0.53 -14.05 8.24 -34.44 -0.28 -14.34 15
8 H 0.06 1.61 7.63 -52.48 -0.40 1.21 15
9 C 0.31 7.68 0.92 -91.84 -0.08 7.59 15
10 O -0.59 -15.29 13.04 -35.23 -0.46 -15.75 15
11 C -0.10 -2.04 6.34 -25.22 -0.16 -2.20 15
12 C -0.03 -0.62 6.79 -26.82 -0.18 -0.80 15
13 C 0.01 0.12 8.07 -81.90 -0.66 -0.54 15
14 N -0.48 -9.60 7.37 33.65 0.25 -9.35 15
15 H 0.42 6.51 8.96 -182.67 -1.64 4.88 15
16 N -0.33 -7.52 12.69 30.67 0.39 -7.13 15
17 C 0.10 2.49 11.12 -17.29 -0.19 2.30 15
18 C -0.19 -4.69 5.33 -104.67 -0.56 -5.25 15
19 H 0.27 6.61 8.31 -40.82 -0.34 6.27 15
20 H 0.38 10.14 7.33 45.56 0.33 10.47 15
21 H 0.07 1.42 8.10 -51.93 -0.42 0.99 15
22 H 0.07 1.48 7.79 -51.93 -0.40 1.08 15
23 H 0.07 1.25 8.14 -51.93 -0.42 0.83 15
24 H 0.06 0.91 8.14 -51.93 -0.42 0.49 15
25 H 0.19 4.77 6.36 -52.49 -0.33 4.44 15
LS Contribution 215.47 15.07 3.25 3.25
Total: -1.00 -28.87 215.47 -6.17 -35.04
By element:
Atomic # 1 Polarization: 15.49 SS G_CDS: -2.84 Total: 12.65 kcal
Atomic # 6 Polarization: -9.24 SS G_CDS: -2.21 Total: -11.45 kcal
Atomic # 7 Polarization: -40.37 SS G_CDS: 1.12 Total: -39.25 kcal
Atomic # 8 Polarization: -15.29 SS G_CDS: -0.46 Total: -15.75 kcal
Atomic # 14 Polarization: 20.53 SS G_CDS: -5.02 Total: 15.51 kcal
Total LS contribution 3.25 Total: 3.25 kcal
Total: -28.87 -6.17 -35.04 kcal
The number of atoms in the molecule is 25
The average number of expansion shells was 15.00
The maximum number of expansion shells was 15
The minimum number of expansion shells was 15
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000260942248.mol2 25
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 69.557 kcal
(2) G-P(sol) polarization free energy of solvation -28.875 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 40.683 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.170 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.044 kcal
(6) G-S(sol) free energy of system = (1) + (5) 34.513 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.17 seconds