Wall clock time and date at job start Mon Mar 30 2020 02:56:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31507 * 1 3 3 Si 1.86800 * 120.00024 * 2 1 4 4 H 1.48494 * 109.47150 * 269.99876 * 3 2 1 5 5 H 1.48500 * 109.47037 * 30.00248 * 3 2 1 6 6 H 1.48508 * 109.47086 * 150.00022 * 3 2 1 7 7 C 1.37872 * 119.99894 * 180.02562 * 2 1 3 8 8 H 1.08005 * 120.00061 * 180.02562 * 7 2 1 9 9 C 1.50698 * 120.00329 * 0.02562 * 7 2 1 10 10 O 1.42898 * 110.37721 * 299.24679 * 9 7 2 11 11 C 1.54447 * 110.32107 * 177.02330 * 9 7 2 12 12 C 1.54440 * 101.98700 * 215.37923 * 11 9 7 13 13 C 1.51326 * 104.99374 * 25.73215 * 12 11 9 14 14 N 1.35218 * 141.94742 * 163.04727 * 13 12 11 15 15 H 0.97006 * 126.03054 * 0.03110 * 14 13 12 16 16 N 1.40002 * 107.93770 * 180.02562 * 14 13 12 17 17 C 1.30742 * 108.21316 * 359.97438 * 16 14 13 18 18 C 1.35130 * 110.30446 * 343.07256 * 13 12 11 19 19 H 0.97006 * 119.99945 * 359.97438 * 1 2 3 20 20 H 0.96696 * 114.00653 * 60.75293 * 10 9 7 21 21 H 1.08996 * 110.92239 * 97.21496 * 11 9 7 22 22 H 1.08996 * 110.93750 * 333.55694 * 11 9 7 23 23 H 1.08998 * 110.34292 * 266.85233 * 12 11 9 24 24 H 1.09004 * 110.33856 * 144.60734 * 12 11 9 25 25 H 1.07993 * 125.88354 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0464 -1.4000 5 1 1.4465 2.6526 0.7001 6 1 3.5467 1.4401 0.7001 7 6 2.0044 -1.1940 -0.0005 8 1 3.0845 -1.1940 -0.0001 9 6 1.2510 -2.4991 -0.0017 10 8 0.4349 -2.6036 1.1667 11 6 2.2355 -3.6867 -0.0773 12 6 1.4535 -4.6969 -0.9452 13 6 0.5151 -3.8522 -1.7795 14 7 -0.2609 -3.8995 -2.8858 15 1 -0.3748 -4.6650 -3.4706 16 7 -0.8712 -2.6487 -3.0381 17 6 -0.4758 -1.8790 -2.0581 18 6 0.4010 -2.6147 -1.2488 19 1 -0.4850 0.8401 0.0004 20 1 -0.2333 -1.9089 1.2432 21 1 2.4303 -4.0946 0.9145 22 1 3.1647 -3.3919 -0.5649 23 1 0.8868 -5.3806 -0.3132 24 1 2.1363 -5.2522 -1.5884 25 1 -0.7726 -0.8528 -1.8998 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260942248.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:56:15 Heat of formation + Delta-G solvation = 34.512779 kcal Electronic energy + Delta-G solvation = -12412.260150 eV Core-core repulsion = 10199.771292 eV Total energy + Delta-G solvation = -2212.488858 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 194.080 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -40.46974 -36.39430 -33.14113 -32.05371 -30.25086 -27.21910 -26.92597 -23.56088 -20.70605 -19.93984 -18.58382 -16.96530 -16.42096 -14.96640 -14.23266 -13.90725 -13.10701 -12.86407 -12.69897 -12.24801 -11.62247 -11.47722 -10.91408 -10.82910 -10.52054 -10.46118 -10.27295 -9.91117 -9.21779 -8.52436 -8.45218 -8.15889 -7.24072 -6.13290 -4.21285 2.83768 3.27105 3.34603 3.37543 3.60365 4.03392 4.36966 5.13441 5.39212 5.65015 5.83505 5.99375 6.24129 6.28448 6.50217 6.69711 6.98230 7.05110 7.29694 7.57832 7.84347 7.89484 8.15447 8.26194 8.73981 8.81906 9.45183 9.56520 10.92606 Molecular weight = 194.08amu Principal moments of inertia in cm(-1) A = 0.042060 B = 0.016264 C = 0.013671 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 665.557959 B = 1721.134385 C = 2047.588442 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.894 5.894 2 C 0.072 3.928 3 Si 0.896 3.104 4 H -0.280 1.280 5 H -0.285 1.285 6 H -0.274 1.274 7 C -0.527 4.527 8 H 0.061 0.939 9 C 0.308 3.692 10 O -0.587 6.587 11 C -0.099 4.099 12 C -0.034 4.034 13 C 0.006 3.994 14 N -0.483 5.483 15 H 0.421 0.579 16 N -0.330 5.330 17 C 0.101 3.899 18 C -0.191 4.191 19 H 0.266 0.734 20 H 0.381 0.619 21 H 0.072 0.928 22 H 0.075 0.925 23 H 0.074 0.926 24 H 0.061 0.939 25 H 0.191 0.809 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.437 -5.293 -1.967 5.827 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.534 5.534 2 C -0.129 4.129 3 Si 0.724 3.276 4 H -0.207 1.207 5 H -0.211 1.211 6 H -0.199 1.199 7 C -0.565 4.565 8 H 0.079 0.921 9 C 0.267 3.733 10 O -0.395 6.395 11 C -0.137 4.137 12 C -0.074 4.074 13 C -0.121 4.121 14 N -0.192 5.192 15 H 0.262 0.738 16 N -0.153 5.153 17 C -0.084 4.084 18 C -0.202 4.202 19 H 0.076 0.924 20 H 0.231 0.769 21 H 0.091 0.909 22 H 0.093 0.907 23 H 0.092 0.908 24 H 0.079 0.921 25 H 0.208 0.792 Dipole moment (debyes) X Y Z Total from point charges 0.950 -5.734 -2.874 6.484 hybrid contribution 0.425 1.163 0.084 1.241 sum 1.375 -4.570 -2.790 5.528 Atomic orbital electron populations 1.69681 1.05868 1.27120 1.50763 1.24972 0.94973 0.99224 0.93774 0.86528 0.79946 0.83002 0.78110 1.20657 1.21078 1.19872 1.21733 0.93487 0.90944 1.50311 0.92079 1.17532 0.85073 0.91775 0.78916 1.86112 1.52142 1.55922 1.45352 1.22303 0.97875 0.94932 0.98612 1.20642 0.94737 0.96658 0.95331 1.21885 0.98949 0.99970 0.91332 1.45499 1.38684 1.12536 1.22442 0.73817 1.77249 1.22543 0.90326 1.25177 1.23927 0.94590 0.99929 0.89965 1.21943 1.03769 0.91955 1.02556 0.92407 0.76892 0.90887 0.90673 0.90773 0.92078 0.79212 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -23.26 8.73 55.43 0.48 -22.78 15 2 C 0.07 1.88 5.21 -17.82 -0.09 1.79 15 3 Si 0.90 20.53 29.54 -169.99 -5.02 15.51 15 4 H -0.28 -6.46 7.11 56.52 0.40 -6.06 15 5 H -0.29 -6.48 7.11 56.52 0.40 -6.08 15 6 H -0.27 -6.27 7.11 56.52 0.40 -5.86 15 7 C -0.53 -14.05 8.24 -34.44 -0.28 -14.34 15 8 H 0.06 1.61 7.63 -52.48 -0.40 1.21 15 9 C 0.31 7.68 0.92 -91.84 -0.08 7.59 15 10 O -0.59 -15.29 13.04 -35.23 -0.46 -15.75 15 11 C -0.10 -2.04 6.34 -25.22 -0.16 -2.20 15 12 C -0.03 -0.62 6.79 -26.82 -0.18 -0.80 15 13 C 0.01 0.12 8.07 -81.90 -0.66 -0.54 15 14 N -0.48 -9.60 7.37 33.65 0.25 -9.35 15 15 H 0.42 6.51 8.96 -182.67 -1.64 4.88 15 16 N -0.33 -7.52 12.69 30.67 0.39 -7.13 15 17 C 0.10 2.49 11.12 -17.29 -0.19 2.30 15 18 C -0.19 -4.69 5.33 -104.67 -0.56 -5.25 15 19 H 0.27 6.61 8.31 -40.82 -0.34 6.27 15 20 H 0.38 10.14 7.33 45.56 0.33 10.47 15 21 H 0.07 1.42 8.10 -51.93 -0.42 0.99 15 22 H 0.07 1.48 7.79 -51.93 -0.40 1.08 15 23 H 0.07 1.25 8.14 -51.93 -0.42 0.83 15 24 H 0.06 0.91 8.14 -51.93 -0.42 0.49 15 25 H 0.19 4.77 6.36 -52.49 -0.33 4.44 15 LS Contribution 215.47 15.07 3.25 3.25 Total: -1.00 -28.87 215.47 -6.17 -35.04 By element: Atomic # 1 Polarization: 15.49 SS G_CDS: -2.84 Total: 12.65 kcal Atomic # 6 Polarization: -9.24 SS G_CDS: -2.21 Total: -11.45 kcal Atomic # 7 Polarization: -40.37 SS G_CDS: 1.12 Total: -39.25 kcal Atomic # 8 Polarization: -15.29 SS G_CDS: -0.46 Total: -15.75 kcal Atomic # 14 Polarization: 20.53 SS G_CDS: -5.02 Total: 15.51 kcal Total LS contribution 3.25 Total: 3.25 kcal Total: -28.87 -6.17 -35.04 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260942248.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.557 kcal (2) G-P(sol) polarization free energy of solvation -28.875 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 40.683 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.170 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.044 kcal (6) G-S(sol) free energy of system = (1) + (5) 34.513 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds