Wall clock time and date at job start Mon Mar 30 2020 02:56:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31507 * 1 3 3 Si 1.86800 * 120.00024 * 2 1 4 4 H 1.48494 * 109.47150 * 269.99876 * 3 2 1 5 5 H 1.48500 * 109.47037 * 30.00248 * 3 2 1 6 6 H 1.48508 * 109.47086 * 150.00022 * 3 2 1 7 7 C 1.37872 * 119.99894 * 180.02562 * 2 1 3 8 8 H 1.08005 * 120.00061 * 180.02562 * 7 2 1 9 9 C 1.50698 * 120.00329 * 0.02562 * 7 2 1 10 10 O 1.42898 * 110.37721 * 299.24679 * 9 7 2 11 11 C 1.54447 * 110.32107 * 177.02330 * 9 7 2 12 12 C 1.54440 * 101.98700 * 215.37923 * 11 9 7 13 13 C 1.51326 * 104.99374 * 25.73215 * 12 11 9 14 14 N 1.35218 * 141.94742 * 163.04727 * 13 12 11 15 15 H 0.97006 * 126.03054 * 0.03110 * 14 13 12 16 16 N 1.40002 * 107.93770 * 180.02562 * 14 13 12 17 17 C 1.30742 * 108.21316 * 359.97438 * 16 14 13 18 18 C 1.35130 * 110.30446 * 343.07256 * 13 12 11 19 19 H 0.97006 * 119.99945 * 359.97438 * 1 2 3 20 20 H 0.96696 * 114.00653 * 60.75293 * 10 9 7 21 21 H 1.08996 * 110.92239 * 97.21496 * 11 9 7 22 22 H 1.08996 * 110.93750 * 333.55694 * 11 9 7 23 23 H 1.08998 * 110.34292 * 266.85233 * 12 11 9 24 24 H 1.09004 * 110.33856 * 144.60734 * 12 11 9 25 25 H 1.07993 * 125.88354 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0464 -1.4000 5 1 1.4465 2.6526 0.7001 6 1 3.5467 1.4401 0.7001 7 6 2.0044 -1.1940 -0.0005 8 1 3.0845 -1.1940 -0.0001 9 6 1.2510 -2.4991 -0.0017 10 8 0.4349 -2.6036 1.1667 11 6 2.2355 -3.6867 -0.0773 12 6 1.4535 -4.6969 -0.9452 13 6 0.5151 -3.8522 -1.7795 14 7 -0.2609 -3.8995 -2.8858 15 1 -0.3748 -4.6650 -3.4706 16 7 -0.8712 -2.6487 -3.0381 17 6 -0.4758 -1.8790 -2.0581 18 6 0.4010 -2.6147 -1.2488 19 1 -0.4850 0.8401 0.0004 20 1 -0.2333 -1.9089 1.2432 21 1 2.4303 -4.0946 0.9145 22 1 3.1647 -3.3919 -0.5649 23 1 0.8868 -5.3806 -0.3132 24 1 2.1363 -5.2522 -1.5884 25 1 -0.7726 -0.8528 -1.8998 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260942248.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:56:15 Heat of formation + Delta-G solvation = 13.123277 kcal Electronic energy + Delta-G solvation = -12413.187668 eV Core-core repulsion = 10199.771292 eV Total energy + Delta-G solvation = -2213.416376 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 194.080 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -42.19152 -38.20104 -34.90431 -34.03527 -32.00539 -28.96616 -28.71814 -25.35243 -22.47964 -21.62886 -20.36925 -18.89602 -18.12421 -16.91580 -15.94359 -15.68564 -14.88860 -14.57250 -14.41242 -14.06725 -13.41954 -13.21758 -12.73594 -12.60356 -12.35332 -12.22572 -11.97473 -11.65870 -11.01915 -10.47746 -10.15560 -10.10146 -8.99985 -8.08898 -6.23539 1.12374 1.44023 1.47016 1.54951 2.02334 2.18968 2.46368 3.16821 3.79441 4.09887 4.25648 4.37075 4.55639 4.83744 4.87720 5.06185 5.32716 5.39357 5.50546 5.73759 5.87731 6.04346 6.24133 6.71835 6.82141 7.01312 7.44710 7.53112 8.94938 Molecular weight = 194.08amu Principal moments of inertia in cm(-1) A = 0.042060 B = 0.016264 C = 0.013671 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 665.557959 B = 1721.134385 C = 2047.588442 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.904 5.904 2 C 0.034 3.966 3 Si 0.951 3.049 4 H -0.282 1.282 5 H -0.282 1.282 6 H -0.273 1.273 7 C -0.554 4.554 8 H 0.055 0.945 9 C 0.288 3.712 10 O -0.594 6.594 11 C -0.099 4.099 12 C -0.025 4.025 13 C 0.026 3.974 14 N -0.462 5.462 15 H 0.443 0.557 16 N -0.339 5.339 17 C 0.079 3.921 18 C -0.237 4.237 19 H 0.266 0.734 20 H 0.372 0.628 21 H 0.082 0.918 22 H 0.080 0.920 23 H 0.093 0.907 24 H 0.105 0.895 25 H 0.175 0.825 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.185 -6.656 -2.480 7.432 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.544 5.544 2 C -0.167 4.167 3 Si 0.778 3.222 4 H -0.208 1.208 5 H -0.207 1.207 6 H -0.197 1.197 7 C -0.592 4.592 8 H 0.073 0.927 9 C 0.248 3.752 10 O -0.402 6.402 11 C -0.137 4.137 12 C -0.064 4.064 13 C -0.104 4.104 14 N -0.172 5.172 15 H 0.289 0.711 16 N -0.163 5.163 17 C -0.105 4.105 18 C -0.248 4.248 19 H 0.076 0.924 20 H 0.221 0.779 21 H 0.101 0.899 22 H 0.099 0.901 23 H 0.112 0.888 24 H 0.123 0.877 25 H 0.191 0.809 Dipole moment (debyes) X Y Z Total from point charges 1.691 -7.119 -3.409 8.072 hybrid contribution 0.176 1.554 0.225 1.580 sum 1.867 -5.565 -3.183 6.678 Atomic orbital electron populations 1.69771 1.06563 1.27572 1.50473 1.25590 0.95761 1.01717 0.93600 0.85679 0.78891 0.79888 0.77786 1.20795 1.20729 1.19728 1.22033 0.93459 0.92525 1.51156 0.92682 1.17892 0.85662 0.92947 0.78665 1.86097 1.52084 1.55490 1.46541 1.22311 0.97364 0.94025 0.99956 1.20730 0.94609 0.95843 0.95195 1.22362 0.97904 0.99447 0.90654 1.45468 1.37255 1.12353 1.22167 0.71138 1.77169 1.23003 0.91340 1.24777 1.23770 0.95772 0.99872 0.91114 1.22021 1.05488 0.93825 1.03503 0.92406 0.77897 0.89939 0.90146 0.88833 0.87712 0.80854 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -47.88 8.73 21.44 0.19 -47.70 15 2 C 0.03 1.76 5.21 84.65 0.44 2.21 15 3 Si 0.95 42.42 29.54 68.60 2.03 44.45 15 4 H -0.28 -12.54 7.11 99.48 0.71 -11.83 15 5 H -0.28 -12.31 7.11 99.48 0.71 -11.60 15 6 H -0.27 -11.99 7.11 99.48 0.71 -11.28 15 7 C -0.55 -29.68 8.24 25.60 0.21 -29.47 15 8 H 0.05 2.91 7.63 -2.91 -0.02 2.89 15 9 C 0.29 14.26 0.92 -11.58 -0.01 14.24 15 10 O -0.59 -31.09 13.04 -148.98 -1.94 -33.03 15 11 C -0.10 -3.83 6.34 31.57 0.20 -3.63 15 12 C -0.02 -0.79 6.79 30.54 0.21 -0.58 15 13 C 0.03 1.02 8.07 41.52 0.34 1.35 15 14 N -0.46 -17.09 7.37 -47.47 -0.35 -17.44 15 15 H 0.44 12.11 8.96 -213.38 -1.91 10.19 15 16 N -0.34 -15.11 12.69 -56.87 -0.72 -15.83 15 17 C 0.08 3.91 11.12 85.33 0.95 4.86 15 18 C -0.24 -11.50 5.33 -19.90 -0.11 -11.60 15 19 H 0.27 13.49 8.31 -92.70 -0.77 12.72 15 20 H 0.37 20.29 7.33 -74.06 -0.54 19.75 15 21 H 0.08 3.00 8.10 -2.39 -0.02 2.98 15 22 H 0.08 2.99 7.79 -2.39 -0.02 2.97 15 23 H 0.09 2.72 8.14 -2.39 -0.02 2.70 15 24 H 0.10 2.52 8.14 -2.38 -0.02 2.50 15 25 H 0.17 9.01 6.36 -2.91 -0.02 8.99 15 Total: -1.00 -61.39 215.47 0.20 -61.19 By element: Atomic # 1 Polarization: 32.21 SS G_CDS: -1.22 Total: 30.98 kcal Atomic # 6 Polarization: -24.85 SS G_CDS: 2.23 Total: -22.62 kcal Atomic # 7 Polarization: -80.08 SS G_CDS: -0.88 Total: -80.97 kcal Atomic # 8 Polarization: -31.09 SS G_CDS: -1.94 Total: -33.03 kcal Atomic # 14 Polarization: 42.42 SS G_CDS: 2.03 Total: 44.45 kcal Total: -61.39 0.20 -61.19 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260942248.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.313 kcal (2) G-P(sol) polarization free energy of solvation -61.393 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.920 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.203 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.190 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.123 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds