Wall clock time and date at job start Mon Mar 30 2020 02:56:15
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
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* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
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Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.31507 * 1
3 3 Si 1.86800 * 120.00024 * 2 1
4 4 H 1.48494 * 109.47150 * 269.99876 * 3 2 1
5 5 H 1.48500 * 109.47037 * 30.00248 * 3 2 1
6 6 H 1.48508 * 109.47086 * 150.00022 * 3 2 1
7 7 C 1.37872 * 119.99894 * 180.02562 * 2 1 3
8 8 H 1.08005 * 120.00061 * 180.02562 * 7 2 1
9 9 C 1.50698 * 120.00329 * 0.02562 * 7 2 1
10 10 O 1.42898 * 110.37721 * 299.24679 * 9 7 2
11 11 C 1.54447 * 110.32107 * 177.02330 * 9 7 2
12 12 C 1.54440 * 101.98700 * 215.37923 * 11 9 7
13 13 C 1.51326 * 104.99374 * 25.73215 * 12 11 9
14 14 N 1.35218 * 141.94742 * 163.04727 * 13 12 11
15 15 H 0.97006 * 126.03054 * 0.03110 * 14 13 12
16 16 N 1.40002 * 107.93770 * 180.02562 * 14 13 12
17 17 C 1.30742 * 108.21316 * 359.97438 * 16 14 13
18 18 C 1.35130 * 110.30446 * 343.07256 * 13 12 11
19 19 H 0.97006 * 119.99945 * 359.97438 * 1 2 3
20 20 H 0.96696 * 114.00653 * 60.75293 * 10 9 7
21 21 H 1.08996 * 110.92239 * 97.21496 * 11 9 7
22 22 H 1.08996 * 110.93750 * 333.55694 * 11 9 7
23 23 H 1.08998 * 110.34292 * 266.85233 * 12 11 9
24 24 H 1.09004 * 110.33856 * 144.60734 * 12 11 9
25 25 H 1.07993 * 125.88354 * 179.97438 * 17 16 14
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.3151 0.0000 0.0000
3 14 2.2491 1.6177 0.0000
4 1 2.4966 2.0464 -1.4000
5 1 1.4465 2.6526 0.7001
6 1 3.5467 1.4401 0.7001
7 6 2.0044 -1.1940 -0.0005
8 1 3.0845 -1.1940 -0.0001
9 6 1.2510 -2.4991 -0.0017
10 8 0.4349 -2.6036 1.1667
11 6 2.2355 -3.6867 -0.0773
12 6 1.4535 -4.6969 -0.9452
13 6 0.5151 -3.8522 -1.7795
14 7 -0.2609 -3.8995 -2.8858
15 1 -0.3748 -4.6650 -3.4706
16 7 -0.8712 -2.6487 -3.0381
17 6 -0.4758 -1.8790 -2.0581
18 6 0.4010 -2.6147 -1.2488
19 1 -0.4850 0.8401 0.0004
20 1 -0.2333 -1.9089 1.2432
21 1 2.4303 -4.0946 0.9145
22 1 3.1647 -3.3919 -0.5649
23 1 0.8868 -5.3806 -0.3132
24 1 2.1363 -5.2522 -1.5884
25 1 -0.7726 -0.8528 -1.8998
RHF calculation, no. of doubly occupied orbitals= 35
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000260942248.mol2 25
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 02:56:15
Heat of formation + Delta-G solvation = 13.123277 kcal
Electronic energy + Delta-G solvation = -12413.187668 eV
Core-core repulsion = 10199.771292 eV
Total energy + Delta-G solvation = -2213.416376 eV
No. of doubly occupied orbitals = 35
Molecular weight
(most abundant/longest-lived isotopes) = 194.080 amu
Computer time = 0.17 seconds
Orbital eigenvalues (eV)
-42.19152 -38.20104 -34.90431 -34.03527 -32.00539 -28.96616 -28.71814 -25.35243
-22.47964 -21.62886 -20.36925 -18.89602 -18.12421 -16.91580 -15.94359 -15.68564
-14.88860 -14.57250 -14.41242 -14.06725 -13.41954 -13.21758 -12.73594 -12.60356
-12.35332 -12.22572 -11.97473 -11.65870 -11.01915 -10.47746 -10.15560 -10.10146
-8.99985 -8.08898 -6.23539 1.12374 1.44023 1.47016 1.54951 2.02334
2.18968 2.46368 3.16821 3.79441 4.09887 4.25648 4.37075 4.55639
4.83744 4.87720 5.06185 5.32716 5.39357 5.50546 5.73759 5.87731
6.04346 6.24133 6.71835 6.82141 7.01312 7.44710 7.53112 8.94938
Molecular weight = 194.08amu
Principal moments of inertia in cm(-1)
A = 0.042060 B = 0.016264 C = 0.013671
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 665.557959 B = 1721.134385 C = 2047.588442
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.904 5.904
2 C 0.034 3.966
3 Si 0.951 3.049
4 H -0.282 1.282
5 H -0.282 1.282
6 H -0.273 1.273
7 C -0.554 4.554
8 H 0.055 0.945
9 C 0.288 3.712
10 O -0.594 6.594
11 C -0.099 4.099
12 C -0.025 4.025
13 C 0.026 3.974
14 N -0.462 5.462
15 H 0.443 0.557
16 N -0.339 5.339
17 C 0.079 3.921
18 C -0.237 4.237
19 H 0.266 0.734
20 H 0.372 0.628
21 H 0.082 0.918
22 H 0.080 0.920
23 H 0.093 0.907
24 H 0.105 0.895
25 H 0.175 0.825
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 2.185 -6.656 -2.480 7.432
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.544 5.544
2 C -0.167 4.167
3 Si 0.778 3.222
4 H -0.208 1.208
5 H -0.207 1.207
6 H -0.197 1.197
7 C -0.592 4.592
8 H 0.073 0.927
9 C 0.248 3.752
10 O -0.402 6.402
11 C -0.137 4.137
12 C -0.064 4.064
13 C -0.104 4.104
14 N -0.172 5.172
15 H 0.289 0.711
16 N -0.163 5.163
17 C -0.105 4.105
18 C -0.248 4.248
19 H 0.076 0.924
20 H 0.221 0.779
21 H 0.101 0.899
22 H 0.099 0.901
23 H 0.112 0.888
24 H 0.123 0.877
25 H 0.191 0.809
Dipole moment (debyes) X Y Z Total
from point charges 1.691 -7.119 -3.409 8.072
hybrid contribution 0.176 1.554 0.225 1.580
sum 1.867 -5.565 -3.183 6.678
Atomic orbital electron populations
1.69771 1.06563 1.27572 1.50473 1.25590 0.95761 1.01717 0.93600
0.85679 0.78891 0.79888 0.77786 1.20795 1.20729 1.19728 1.22033
0.93459 0.92525 1.51156 0.92682 1.17892 0.85662 0.92947 0.78665
1.86097 1.52084 1.55490 1.46541 1.22311 0.97364 0.94025 0.99956
1.20730 0.94609 0.95843 0.95195 1.22362 0.97904 0.99447 0.90654
1.45468 1.37255 1.12353 1.22167 0.71138 1.77169 1.23003 0.91340
1.24777 1.23770 0.95772 0.99872 0.91114 1.22021 1.05488 0.93825
1.03503 0.92406 0.77897 0.89939 0.90146 0.88833 0.87712 0.80854
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 14.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.90 -47.88 8.73 21.44 0.19 -47.70 15
2 C 0.03 1.76 5.21 84.65 0.44 2.21 15
3 Si 0.95 42.42 29.54 68.60 2.03 44.45 15
4 H -0.28 -12.54 7.11 99.48 0.71 -11.83 15
5 H -0.28 -12.31 7.11 99.48 0.71 -11.60 15
6 H -0.27 -11.99 7.11 99.48 0.71 -11.28 15
7 C -0.55 -29.68 8.24 25.60 0.21 -29.47 15
8 H 0.05 2.91 7.63 -2.91 -0.02 2.89 15
9 C 0.29 14.26 0.92 -11.58 -0.01 14.24 15
10 O -0.59 -31.09 13.04 -148.98 -1.94 -33.03 15
11 C -0.10 -3.83 6.34 31.57 0.20 -3.63 15
12 C -0.02 -0.79 6.79 30.54 0.21 -0.58 15
13 C 0.03 1.02 8.07 41.52 0.34 1.35 15
14 N -0.46 -17.09 7.37 -47.47 -0.35 -17.44 15
15 H 0.44 12.11 8.96 -213.38 -1.91 10.19 15
16 N -0.34 -15.11 12.69 -56.87 -0.72 -15.83 15
17 C 0.08 3.91 11.12 85.33 0.95 4.86 15
18 C -0.24 -11.50 5.33 -19.90 -0.11 -11.60 15
19 H 0.27 13.49 8.31 -92.70 -0.77 12.72 15
20 H 0.37 20.29 7.33 -74.06 -0.54 19.75 15
21 H 0.08 3.00 8.10 -2.39 -0.02 2.98 15
22 H 0.08 2.99 7.79 -2.39 -0.02 2.97 15
23 H 0.09 2.72 8.14 -2.39 -0.02 2.70 15
24 H 0.10 2.52 8.14 -2.38 -0.02 2.50 15
25 H 0.17 9.01 6.36 -2.91 -0.02 8.99 15
Total: -1.00 -61.39 215.47 0.20 -61.19
By element:
Atomic # 1 Polarization: 32.21 SS G_CDS: -1.22 Total: 30.98 kcal
Atomic # 6 Polarization: -24.85 SS G_CDS: 2.23 Total: -22.62 kcal
Atomic # 7 Polarization: -80.08 SS G_CDS: -0.88 Total: -80.97 kcal
Atomic # 8 Polarization: -31.09 SS G_CDS: -1.94 Total: -33.03 kcal
Atomic # 14 Polarization: 42.42 SS G_CDS: 2.03 Total: 44.45 kcal
Total: -61.39 0.20 -61.19 kcal
The number of atoms in the molecule is 25
The average number of expansion shells was 15.00
The maximum number of expansion shells was 15
The minimum number of expansion shells was 15
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000260942248.mol2 25
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 74.313 kcal
(2) G-P(sol) polarization free energy of solvation -61.393 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.920 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.203 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.190 kcal
(6) G-S(sol) free energy of system = (1) + (5) 13.123 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.17 seconds