Wall clock time and date at job start Mon Mar 30 2020 02:56:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86798 * 119.99830 * 2 1 4 4 H 1.48509 * 109.46867 * 180.02562 * 3 2 1 5 5 H 1.48503 * 109.47440 * 299.99805 * 3 2 1 6 6 H 1.48494 * 109.47240 * 60.00536 * 3 2 1 7 7 C 1.37871 * 119.99810 * 180.02562 * 2 1 3 8 8 H 1.08006 * 119.99933 * 179.97438 * 7 2 1 9 9 C 1.50706 * 120.00250 * 0.02562 * 7 2 1 10 10 O 1.42903 * 110.29302 * 60.69685 * 9 7 2 11 11 C 1.54432 * 110.33289 * 182.95831 * 9 7 2 12 12 C 1.54449 * 101.98972 * 93.15552 * 11 9 7 13 13 C 1.51319 * 104.99460 * 25.71830 * 12 11 9 14 14 N 1.35215 * 141.94940 * 163.07020 * 13 12 11 15 15 H 0.96997 * 126.03389 * 0.26839 * 14 13 12 16 16 N 1.40005 * 107.93690 * 180.02562 * 14 13 12 17 17 C 1.30734 * 108.21538 * 0.02562 * 16 14 13 18 18 C 1.35140 * 110.30242 * 343.07363 * 13 12 11 19 19 H 0.97005 * 119.99826 * 359.97438 * 1 2 3 20 20 H 0.96697 * 114.00075 * 299.29680 * 10 9 7 21 21 H 1.09002 * 110.92513 * 211.32374 * 11 9 7 22 22 H 1.08994 * 110.93254 * 334.94584 * 11 9 7 23 23 H 1.09002 * 110.33365 * 144.59335 * 12 11 9 24 24 H 1.08998 * 110.33270 * 266.73310 * 12 11 9 25 25 H 1.07999 * 125.87812 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7092 1.3464 -0.0006 5 1 1.8904 2.3965 -1.2125 6 1 1.8904 2.3964 1.2125 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1940 -0.0010 9 6 1.2509 -2.4992 -0.0017 10 8 0.4355 -2.5996 -1.1709 11 6 2.2350 -3.6870 0.0726 12 6 2.3075 -3.9490 1.5930 13 6 0.9954 -3.4326 2.1422 14 7 0.1962 -3.5009 3.2308 15 1 0.3718 -4.0117 4.0364 16 7 -0.9269 -2.6998 2.9920 17 6 -0.8059 -2.1705 1.8027 18 6 0.4002 -2.6163 1.2447 19 1 -0.4850 0.8401 0.0004 20 1 -0.2317 -1.9037 -1.2461 21 1 1.8378 -4.5551 -0.4535 22 1 3.2121 -3.4085 -0.3220 23 1 2.4062 -5.0167 1.7891 24 1 3.1440 -3.4049 2.0316 25 1 -1.5128 -1.5034 1.3320 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260942249.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:56:18 Heat of formation + Delta-G solvation = 32.276246 kcal Electronic energy + Delta-G solvation = -12423.752150 eV Core-core repulsion = 10211.166309 eV Total energy + Delta-G solvation = -2212.585841 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 194.080 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -40.46659 -36.37313 -33.23080 -32.03896 -30.26825 -27.20581 -26.65914 -23.74073 -20.72960 -19.93888 -18.58817 -17.08615 -16.28682 -14.91672 -14.36525 -13.92402 -13.14519 -13.01799 -12.60487 -12.04125 -11.51564 -11.37461 -11.10415 -10.95078 -10.52396 -10.41094 -10.20607 -9.86544 -9.39512 -8.58836 -8.41833 -8.21193 -7.15891 -6.12190 -4.22424 2.85186 3.25124 3.33690 3.36649 3.61189 4.05241 4.36434 5.14334 5.39571 5.67174 5.79464 6.02472 6.25165 6.33301 6.51257 6.73790 6.85485 6.98039 7.29211 7.56666 7.81744 7.86770 8.16909 8.26114 8.71731 8.80654 9.45041 9.57895 10.92026 Molecular weight = 194.08amu Principal moments of inertia in cm(-1) A = 0.038097 B = 0.016670 C = 0.014751 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 734.796248 B = 1679.284267 C = 1897.773844 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.888 5.888 2 C 0.074 3.926 3 Si 0.897 3.103 4 H -0.273 1.273 5 H -0.282 1.282 6 H -0.285 1.285 7 C -0.529 4.529 8 H 0.062 0.938 9 C 0.311 3.689 10 O -0.590 6.590 11 C -0.100 4.100 12 C -0.026 4.026 13 C 0.005 3.995 14 N -0.482 5.482 15 H 0.421 0.579 16 N -0.326 5.326 17 C 0.099 3.901 18 C -0.187 4.187 19 H 0.265 0.735 20 H 0.380 0.620 21 H 0.063 0.937 22 H 0.074 0.926 23 H 0.059 0.941 24 H 0.077 0.923 25 H 0.181 0.819 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.298 -4.588 2.660 5.780 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.527 5.527 2 C -0.129 4.129 3 Si 0.725 3.275 4 H -0.198 1.198 5 H -0.208 1.208 6 H -0.211 1.211 7 C -0.567 4.567 8 H 0.080 0.920 9 C 0.270 3.730 10 O -0.398 6.398 11 C -0.138 4.138 12 C -0.066 4.066 13 C -0.121 4.121 14 N -0.190 5.190 15 H 0.262 0.738 16 N -0.149 5.149 17 C -0.087 4.087 18 C -0.198 4.198 19 H 0.075 0.925 20 H 0.230 0.770 21 H 0.081 0.919 22 H 0.093 0.907 23 H 0.077 0.923 24 H 0.096 0.904 25 H 0.198 0.802 Dipole moment (debyes) X Y Z Total from point charges 1.783 -5.053 3.552 6.428 hybrid contribution 0.637 1.468 0.110 1.604 sum 2.420 -3.584 3.661 5.667 Atomic orbital electron populations 1.69661 1.05942 1.27045 1.50065 1.24969 0.94963 0.99259 0.93667 0.86468 0.80138 0.83353 0.77567 1.19786 1.20816 1.21093 1.21676 0.93335 0.90581 1.51108 0.91984 1.17698 0.84973 0.91623 0.78724 1.86112 1.52077 1.55700 1.45937 1.22320 1.00144 0.98585 0.92747 1.20514 0.91107 0.98895 0.96071 1.21660 0.97292 1.03191 0.89972 1.45455 1.16749 1.41847 1.14991 0.73775 1.77188 1.06103 1.12403 1.19238 1.23424 0.97641 0.97023 0.90573 1.21961 0.96031 1.00341 1.01505 0.92497 0.77015 0.91875 0.90700 0.92253 0.90423 0.80172 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -23.33 9.56 55.43 0.53 -22.80 15 2 C 0.07 1.96 5.25 -17.82 -0.09 1.87 15 3 Si 0.90 20.78 29.54 -169.99 -5.02 15.76 15 4 H -0.27 -6.28 7.11 56.52 0.40 -5.88 15 5 H -0.28 -6.48 7.11 56.52 0.40 -6.08 15 6 H -0.28 -6.68 7.11 56.52 0.40 -6.28 15 7 C -0.53 -14.09 8.25 -34.44 -0.28 -14.37 15 8 H 0.06 1.63 7.57 -52.48 -0.40 1.23 15 9 C 0.31 7.75 0.92 -91.85 -0.08 7.66 15 10 O -0.59 -15.40 13.05 -35.23 -0.46 -15.86 15 11 C -0.10 -2.06 6.36 -25.22 -0.16 -2.22 15 12 C -0.03 -0.48 6.78 -26.82 -0.18 -0.66 15 13 C 0.01 0.12 8.07 -81.90 -0.66 -0.54 15 14 N -0.48 -9.59 7.37 33.64 0.25 -9.34 15 15 H 0.42 6.56 8.96 -182.67 -1.64 4.92 15 16 N -0.33 -7.37 12.69 30.67 0.39 -6.98 15 17 C 0.10 2.38 11.07 -17.29 -0.19 2.19 15 18 C -0.19 -4.58 5.14 -104.67 -0.54 -5.11 15 19 H 0.27 6.67 8.31 -40.82 -0.34 6.33 15 20 H 0.38 9.99 7.32 45.56 0.33 10.32 15 21 H 0.06 1.24 8.11 -51.93 -0.42 0.82 15 22 H 0.07 1.46 7.73 -51.93 -0.40 1.06 15 23 H 0.06 0.88 8.14 -51.93 -0.42 0.46 15 24 H 0.08 1.34 8.14 -51.93 -0.42 0.92 15 25 H 0.18 4.30 7.43 -52.49 -0.39 3.91 15 LS Contribution 217.07 15.07 3.27 3.27 Total: -1.00 -29.29 217.07 -6.13 -35.42 By element: Atomic # 1 Polarization: 14.63 SS G_CDS: -2.89 Total: 11.74 kcal Atomic # 6 Polarization: -9.00 SS G_CDS: -2.20 Total: -11.20 kcal Atomic # 7 Polarization: -40.29 SS G_CDS: 1.17 Total: -39.12 kcal Atomic # 8 Polarization: -15.40 SS G_CDS: -0.46 Total: -15.86 kcal Atomic # 14 Polarization: 20.78 SS G_CDS: -5.02 Total: 15.76 kcal Total LS contribution 3.27 Total: 3.27 kcal Total: -29.29 -6.13 -35.42 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260942249.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.694 kcal (2) G-P(sol) polarization free energy of solvation -29.286 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 38.408 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.132 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.418 kcal (6) G-S(sol) free energy of system = (1) + (5) 32.276 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds