Wall clock time and date at job start Mon Mar 30 2020 02:56:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86798 * 119.99830 * 2 1 4 4 H 1.48509 * 109.46867 * 180.02562 * 3 2 1 5 5 H 1.48503 * 109.47440 * 299.99805 * 3 2 1 6 6 H 1.48494 * 109.47240 * 60.00536 * 3 2 1 7 7 C 1.37871 * 119.99810 * 180.02562 * 2 1 3 8 8 H 1.08006 * 119.99933 * 179.97438 * 7 2 1 9 9 C 1.50706 * 120.00250 * 0.02562 * 7 2 1 10 10 O 1.42903 * 110.29302 * 60.69685 * 9 7 2 11 11 C 1.54432 * 110.33289 * 182.95831 * 9 7 2 12 12 C 1.54449 * 101.98972 * 93.15552 * 11 9 7 13 13 C 1.51319 * 104.99460 * 25.71830 * 12 11 9 14 14 N 1.35215 * 141.94940 * 163.07020 * 13 12 11 15 15 H 0.96997 * 126.03389 * 0.26839 * 14 13 12 16 16 N 1.40005 * 107.93690 * 180.02562 * 14 13 12 17 17 C 1.30734 * 108.21538 * 0.02562 * 16 14 13 18 18 C 1.35140 * 110.30242 * 343.07363 * 13 12 11 19 19 H 0.97005 * 119.99826 * 359.97438 * 1 2 3 20 20 H 0.96697 * 114.00075 * 299.29680 * 10 9 7 21 21 H 1.09002 * 110.92513 * 211.32374 * 11 9 7 22 22 H 1.08994 * 110.93254 * 334.94584 * 11 9 7 23 23 H 1.09002 * 110.33365 * 144.59335 * 12 11 9 24 24 H 1.08998 * 110.33270 * 266.73310 * 12 11 9 25 25 H 1.07999 * 125.87812 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7092 1.3464 -0.0006 5 1 1.8904 2.3965 -1.2125 6 1 1.8904 2.3964 1.2125 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1940 -0.0010 9 6 1.2509 -2.4992 -0.0017 10 8 0.4355 -2.5996 -1.1709 11 6 2.2350 -3.6870 0.0726 12 6 2.3075 -3.9490 1.5930 13 6 0.9954 -3.4326 2.1422 14 7 0.1962 -3.5009 3.2308 15 1 0.3718 -4.0117 4.0364 16 7 -0.9269 -2.6998 2.9920 17 6 -0.8059 -2.1705 1.8027 18 6 0.4002 -2.6163 1.2447 19 1 -0.4850 0.8401 0.0004 20 1 -0.2317 -1.9037 -1.2461 21 1 1.8378 -4.5551 -0.4535 22 1 3.2121 -3.4085 -0.3220 23 1 2.4062 -5.0167 1.7891 24 1 3.1440 -3.4049 2.0316 25 1 -1.5128 -1.5034 1.3320 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260942249.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:56:18 Heat of formation + Delta-G solvation = 10.588656 kcal Electronic energy + Delta-G solvation = -12424.692595 eV Core-core repulsion = 10211.166309 eV Total energy + Delta-G solvation = -2213.526286 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 194.080 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -42.18008 -38.18062 -34.99706 -34.03563 -32.00892 -28.91344 -28.49980 -25.52394 -22.48685 -21.63205 -20.37073 -18.99678 -18.01478 -16.87995 -16.04316 -15.74672 -14.89496 -14.73613 -14.39990 -13.75145 -13.39413 -13.07887 -12.83086 -12.76436 -12.29202 -12.18388 -12.03833 -11.58657 -11.20122 -10.53016 -10.15580 -10.12737 -8.92648 -8.07098 -6.24976 1.14133 1.41358 1.45090 1.53827 2.03671 2.22600 2.45197 3.16606 3.81253 4.08601 4.24423 4.32679 4.67017 4.79930 4.89267 5.04134 5.25789 5.34395 5.54258 5.72571 5.85747 6.03016 6.24070 6.72990 6.82036 6.99861 7.44455 7.55290 8.93844 Molecular weight = 194.08amu Principal moments of inertia in cm(-1) A = 0.038097 B = 0.016670 C = 0.014751 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 734.796248 B = 1679.284267 C = 1897.773844 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.900 5.900 2 C 0.032 3.968 3 Si 0.952 3.048 4 H -0.269 1.269 5 H -0.280 1.280 6 H -0.289 1.289 7 C -0.549 4.549 8 H 0.059 0.941 9 C 0.291 3.709 10 O -0.600 6.600 11 C -0.099 4.099 12 C -0.018 4.018 13 C 0.022 3.978 14 N -0.462 5.462 15 H 0.443 0.557 16 N -0.336 5.336 17 C 0.079 3.921 18 C -0.232 4.232 19 H 0.265 0.735 20 H 0.373 0.627 21 H 0.069 0.931 22 H 0.083 0.917 23 H 0.104 0.896 24 H 0.093 0.907 25 H 0.170 0.830 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.621 -5.438 3.550 7.435 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.539 5.539 2 C -0.170 4.170 3 Si 0.779 3.221 4 H -0.193 1.193 5 H -0.206 1.206 6 H -0.215 1.215 7 C -0.587 4.587 8 H 0.077 0.923 9 C 0.251 3.749 10 O -0.408 6.408 11 C -0.137 4.137 12 C -0.057 4.057 13 C -0.107 4.107 14 N -0.173 5.173 15 H 0.288 0.712 16 N -0.160 5.160 17 C -0.105 4.105 18 C -0.243 4.243 19 H 0.074 0.926 20 H 0.222 0.778 21 H 0.088 0.912 22 H 0.101 0.899 23 H 0.122 0.878 24 H 0.111 0.889 25 H 0.187 0.813 Dipole moment (debyes) X Y Z Total from point charges 3.105 -5.923 4.464 8.041 hybrid contribution 0.214 1.698 -0.155 1.718 sum 3.319 -4.225 4.309 6.887 Atomic orbital electron populations 1.69758 1.06661 1.27428 1.50031 1.25626 0.95784 1.01853 0.93697 0.85613 0.79239 0.80108 0.77187 1.19323 1.20572 1.21520 1.21963 0.93398 0.91899 1.51489 0.92251 1.18076 0.85591 0.92824 0.78450 1.86099 1.52125 1.55406 1.47182 1.22344 0.99335 0.97083 0.94954 1.20613 0.89493 1.01802 0.93789 1.22146 0.97807 1.01472 0.89235 1.45434 1.15563 1.40798 1.15487 0.71176 1.77116 1.07280 1.13019 1.18586 1.23353 0.98088 0.97783 0.91324 1.22053 0.97013 1.02694 1.02542 0.92579 0.77847 0.91204 0.89867 0.87757 0.88890 0.81318 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -47.91 9.56 21.45 0.20 -47.70 15 2 C 0.03 1.67 5.25 84.65 0.44 2.11 15 3 Si 0.95 42.54 29.54 68.60 2.03 44.57 15 4 H -0.27 -11.71 7.11 99.48 0.71 -11.00 15 5 H -0.28 -12.30 7.11 99.48 0.71 -11.59 15 6 H -0.29 -13.00 7.11 99.48 0.71 -12.29 15 7 C -0.55 -29.05 8.25 25.60 0.21 -28.84 15 8 H 0.06 3.07 7.57 -2.91 -0.02 3.05 15 9 C 0.29 14.34 0.92 -11.59 -0.01 14.33 15 10 O -0.60 -31.71 13.05 -148.98 -1.94 -33.65 15 11 C -0.10 -3.86 6.36 31.57 0.20 -3.66 15 12 C -0.02 -0.58 6.78 30.54 0.21 -0.37 15 13 C 0.02 0.89 8.07 41.52 0.34 1.22 15 14 N -0.46 -17.19 7.37 -47.47 -0.35 -17.54 15 15 H 0.44 12.25 8.96 -213.38 -1.91 10.33 15 16 N -0.34 -14.86 12.69 -56.87 -0.72 -15.58 15 17 C 0.08 3.82 11.07 85.33 0.94 4.77 15 18 C -0.23 -11.17 5.14 -19.90 -0.10 -11.27 15 19 H 0.26 13.52 8.31 -92.70 -0.77 12.75 15 20 H 0.37 20.21 7.32 -74.06 -0.54 19.67 15 21 H 0.07 2.59 8.11 -2.39 -0.02 2.57 15 22 H 0.08 3.05 7.73 -2.39 -0.02 3.03 15 23 H 0.10 2.52 8.14 -2.39 -0.02 2.50 15 24 H 0.09 2.81 8.14 -2.39 -0.02 2.79 15 25 H 0.17 8.36 7.43 -2.91 -0.02 8.33 15 Total: -1.00 -61.69 217.07 0.22 -61.47 By element: Atomic # 1 Polarization: 31.37 SS G_CDS: -1.22 Total: 30.14 kcal Atomic # 6 Polarization: -23.94 SS G_CDS: 2.23 Total: -21.71 kcal Atomic # 7 Polarization: -79.95 SS G_CDS: -0.87 Total: -80.82 kcal Atomic # 8 Polarization: -31.71 SS G_CDS: -1.94 Total: -33.65 kcal Atomic # 14 Polarization: 42.54 SS G_CDS: 2.03 Total: 44.57 kcal Total: -61.69 0.22 -61.47 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260942249.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.056 kcal (2) G-P(sol) polarization free energy of solvation -61.689 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.367 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.221 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.468 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.589 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds