Wall clock time and date at job start Mon Mar 30 2020 02:47:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86800 * 119.99715 * 2 1 4 4 H 1.48500 * 109.47570 * 274.07528 * 3 2 1 5 5 H 1.48504 * 109.46934 * 34.07528 * 3 2 1 6 6 H 1.48499 * 109.46979 * 154.07380 * 3 2 1 7 7 C 1.37875 * 120.00302 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00060 * 6.84814 * 7 2 1 9 9 C 1.50697 * 120.00075 * 186.85161 * 7 2 1 10 10 O 1.42905 * 110.39727 * 58.16331 * 9 7 2 11 11 C 1.54330 * 110.29896 * 295.97447 * 9 7 2 12 12 C 1.54449 * 101.93636 * 266.36191 * 11 9 7 13 13 C 1.51436 * 104.99692 * 334.60756 * 12 11 9 14 14 O 1.34753 * 141.54674 * 196.85130 * 13 12 11 15 15 C 1.34193 * 109.54885 * 180.02562 * 14 13 12 16 16 C 1.34446 * 108.42558 * 359.97438 * 15 14 13 17 17 C 1.34283 * 110.25495 * 16.89757 * 13 12 11 18 18 H 0.96996 * 120.00489 * 359.97438 * 1 2 3 19 19 H 0.96700 * 113.99910 * 60.79481 * 10 9 7 20 20 H 1.09000 * 110.76195 * 148.26980 * 11 9 7 21 21 H 1.09000 * 111.07404 * 24.59602 * 11 9 7 22 22 H 1.08998 * 110.33789 * 215.72251 * 12 11 9 23 23 H 1.09000 * 110.42285 * 93.53108 * 12 11 9 24 24 H 1.07992 * 125.78581 * 179.97438 * 15 14 13 25 25 H 1.07996 * 126.60187 * 180.02562 * 16 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 2.4104 2.0963 -1.3965 5 1 1.4921 2.6263 0.7845 6 1 3.5870 1.4169 0.6121 7 6 2.0045 -1.1940 -0.0005 8 1 1.4704 -2.1259 -0.1125 9 6 3.5034 -1.1987 0.1552 10 8 3.8791 -0.5633 1.3788 11 6 4.1684 -0.4893 -1.0433 12 6 4.4650 -1.6727 -1.9905 13 6 4.5740 -2.8816 -1.0850 14 8 5.0323 -4.1487 -1.0670 15 6 4.7894 -4.6970 0.1334 16 6 4.1707 -3.7828 0.9009 17 6 4.0319 -2.6146 0.1142 18 1 -0.4851 0.8400 0.0004 19 1 3.5272 -0.9941 2.1698 20 1 5.0903 0.0049 -0.7369 21 1 3.4836 0.2198 -1.5083 22 1 5.4043 -1.5090 -2.5187 23 1 3.6494 -1.8044 -2.7016 24 1 5.0472 -5.7022 0.4324 25 1 3.8422 -3.9146 1.9212 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260942705.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:47:28 Heat of formation + Delta-G solvation = -33.846438 kcal Electronic energy + Delta-G solvation = -12352.690896 eV Core-core repulsion = 10104.945009 eV Total energy + Delta-G solvation = -2247.745887 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 194.073 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -43.52295 -39.19940 -35.39988 -34.46730 -33.04788 -29.43266 -28.60506 -25.49872 -23.16562 -21.50154 -20.69624 -19.16177 -18.08705 -17.28207 -16.74602 -16.10542 -15.63034 -15.12318 -14.84732 -14.19723 -13.72282 -13.50139 -13.31710 -12.89280 -12.77103 -12.56369 -11.95657 -11.82193 -11.22492 -10.84575 -10.53565 -10.25793 -9.11221 -8.37611 -6.51820 0.90423 1.35593 1.43858 1.69705 1.78319 1.81146 2.39894 2.97549 3.65311 3.72739 4.00938 4.21850 4.28337 4.41106 4.70006 4.79612 4.89465 5.02533 5.13429 5.24011 5.49346 5.55036 5.67356 6.09061 6.32124 6.57585 7.10274 7.29471 8.76962 Molecular weight = 194.07amu Principal moments of inertia in cm(-1) A = 0.053026 B = 0.014598 C = 0.013834 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 527.915395 B = 1917.555506 C = 2023.518651 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.937 5.937 2 C 0.033 3.967 3 Si 0.937 3.063 4 H -0.270 1.270 5 H -0.303 1.303 6 H -0.210 1.210 7 C -0.545 4.545 8 H 0.025 0.975 9 C 0.277 3.723 10 O -0.577 6.577 11 C -0.110 4.110 12 C -0.006 4.006 13 C -0.071 4.071 14 O -0.175 6.175 15 C -0.035 4.035 16 C -0.216 4.216 17 C -0.218 4.218 18 H 0.269 0.731 19 H 0.369 0.631 20 H 0.084 0.916 21 H 0.073 0.927 22 H 0.111 0.889 23 H 0.089 0.911 24 H 0.253 0.747 25 H 0.154 0.846 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.944 -4.103 -1.083 11.738 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.576 5.576 2 C -0.166 4.166 3 Si 0.761 3.239 4 H -0.196 1.196 5 H -0.230 1.230 6 H -0.132 1.132 7 C -0.582 4.582 8 H 0.043 0.957 9 C 0.237 3.763 10 O -0.384 6.384 11 C -0.148 4.148 12 C -0.043 4.043 13 C -0.121 4.121 14 O -0.072 6.072 15 C -0.101 4.101 16 C -0.235 4.235 17 C -0.219 4.219 18 H 0.077 0.923 19 H 0.217 0.783 20 H 0.103 0.897 21 H 0.091 0.909 22 H 0.129 0.871 23 H 0.107 0.893 24 H 0.269 0.731 25 H 0.172 0.828 Dipole moment (debyes) X Y Z Total from point charges 11.252 -3.749 -1.742 11.987 hybrid contribution -1.024 0.122 0.748 1.274 sum 10.228 -3.627 -0.995 10.897 Atomic orbital electron populations 1.70079 1.08533 1.28537 1.50429 1.25825 0.95220 1.03361 0.92232 0.86055 0.82029 0.77399 0.78414 1.19632 1.23048 1.13246 1.21414 0.91534 0.93035 1.52255 0.95678 1.18110 0.90936 0.83779 0.83432 1.86467 1.77383 1.57962 1.16597 1.22609 1.00441 0.96971 0.94740 1.20609 1.03842 0.84735 0.95143 1.23326 1.03074 0.85869 0.99803 1.83775 1.64554 1.23529 1.35310 1.24788 1.03142 1.00566 0.81593 1.21516 1.06604 0.93010 1.02372 1.22274 1.03310 0.99404 0.96946 0.92256 0.78309 0.89703 0.90880 0.87093 0.89313 0.73121 0.82849 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -58.33 13.96 21.45 0.30 -58.03 15 2 C 0.03 1.93 5.43 84.65 0.46 2.39 15 3 Si 0.94 44.44 24.05 68.60 1.65 46.09 15 4 H -0.27 -12.04 7.09 99.48 0.70 -11.33 15 5 H -0.30 -14.55 7.11 99.48 0.71 -13.84 15 6 H -0.21 -9.52 5.22 99.48 0.52 -9.00 15 7 C -0.54 -31.32 8.85 25.60 0.23 -31.10 15 8 H 0.02 1.64 8.01 -2.91 -0.02 1.62 15 9 C 0.28 13.20 0.75 -11.68 -0.01 13.20 15 10 O -0.58 -26.53 10.26 -148.98 -1.53 -28.06 15 11 C -0.11 -4.54 4.76 31.54 0.15 -4.39 15 12 C -0.01 -0.23 6.79 30.57 0.21 -0.02 15 13 C -0.07 -2.84 8.21 25.02 0.21 -2.64 15 14 O -0.17 -6.23 10.66 -5.88 -0.06 -6.29 15 15 C -0.03 -1.05 12.08 66.95 0.81 -0.24 15 16 C -0.22 -7.97 10.92 22.21 0.24 -7.73 15 17 C -0.22 -9.57 5.89 -19.80 -0.12 -9.69 15 18 H 0.27 15.62 8.31 -92.71 -0.77 14.85 15 19 H 0.37 15.37 9.08 -74.06 -0.67 14.70 15 20 H 0.08 3.16 8.10 -2.39 -0.02 3.14 15 21 H 0.07 3.11 4.86 -2.39 -0.01 3.10 15 22 H 0.11 3.01 8.14 -2.39 -0.02 2.99 15 23 H 0.09 3.14 8.14 -2.39 -0.02 3.12 15 24 H 0.25 4.50 8.06 -2.91 -0.02 4.47 15 25 H 0.15 5.04 8.06 -2.91 -0.02 5.01 15 Total: -1.00 -70.55 212.77 2.88 -67.67 By element: Atomic # 1 Polarization: 18.48 SS G_CDS: 0.35 Total: 18.83 kcal Atomic # 6 Polarization: -42.39 SS G_CDS: 2.18 Total: -40.21 kcal Atomic # 7 Polarization: -58.33 SS G_CDS: 0.30 Total: -58.03 kcal Atomic # 8 Polarization: -32.76 SS G_CDS: -1.59 Total: -34.35 kcal Atomic # 14 Polarization: 44.44 SS G_CDS: 1.65 Total: 46.09 kcal Total: -70.55 2.88 -67.67 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260942705.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.824 kcal (2) G-P(sol) polarization free energy of solvation -70.552 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.728 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.881 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.671 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.846 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds