Wall clock time and date at job start Mon Mar 30 2020 02:47:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86795 * 120.00225 * 2 1 4 4 H 1.48503 * 109.47048 * 180.02562 * 3 2 1 5 5 H 1.48504 * 109.47326 * 300.00149 * 3 2 1 6 6 H 1.48500 * 109.47054 * 60.00627 * 3 2 1 7 7 C 1.37885 * 119.99627 * 180.02562 * 2 1 3 8 8 H 1.07995 * 119.99736 * 175.18591 * 7 2 1 9 9 C 1.50697 * 119.99766 * 355.18968 * 7 2 1 10 10 O 1.42896 * 110.31102 * 303.22146 * 9 7 2 11 11 C 1.54471 * 110.35446 * 65.41930 * 9 7 2 12 12 C 1.54450 * 101.87108 * 93.32029 * 11 9 7 13 13 C 1.51441 * 104.99967 * 25.56806 * 12 11 9 14 14 O 1.34739 * 141.55169 * 163.12354 * 13 12 11 15 15 C 1.34187 * 109.55054 * 179.97438 * 14 13 12 16 16 C 1.34449 * 108.42854 * 0.02562 * 15 14 13 17 17 C 1.34291 * 110.25113 * 343.12755 * 13 12 11 18 18 H 0.96994 * 120.00122 * 185.08640 * 1 2 3 19 19 H 0.96701 * 114.00525 * 295.70810 * 10 9 7 20 20 H 1.08995 * 110.95184 * 211.46708 * 11 9 7 21 21 H 1.09000 * 110.94816 * 335.17905 * 11 9 7 22 22 H 1.08995 * 110.33616 * 144.45037 * 12 11 9 23 23 H 1.09004 * 110.33561 * 266.58306 * 12 11 9 24 24 H 1.08005 * 125.78619 * 179.97438 * 15 14 13 25 25 H 1.07995 * 126.59872 * 179.97438 * 16 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3462 -0.0006 5 1 1.8905 2.3964 -1.2125 6 1 1.8906 2.3963 1.2126 7 6 2.0045 -1.1942 -0.0005 8 1 3.0816 -1.1958 -0.0790 9 6 1.2549 -2.4969 0.1083 10 8 0.4548 -2.5114 1.2923 11 6 0.3712 -2.7142 -1.1399 12 6 1.3021 -3.5485 -2.0469 13 6 2.2487 -4.2513 -1.0964 14 8 3.1203 -5.2774 -1.0418 15 6 3.6520 -5.3499 0.1881 16 6 3.1239 -4.3669 0.9381 17 6 2.2203 -3.6605 0.1093 18 1 -0.4850 -0.8367 0.0745 19 1 0.9657 -2.4791 2.1127 20 1 -0.5298 -3.2730 -0.8870 21 1 0.1193 -1.7633 -1.6094 22 1 0.7241 -4.2780 -2.6142 23 1 1.8561 -2.8969 -2.7228 24 1 4.3801 -6.0755 0.5196 25 1 3.3463 -4.1570 1.9739 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260942706.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:47:31 Heat of formation + Delta-G solvation = -45.375001 kcal Electronic energy + Delta-G solvation = -12331.418392 eV Core-core repulsion = 10083.172589 eV Total energy + Delta-G solvation = -2248.245803 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 194.073 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -43.56705 -39.22661 -35.41670 -34.34193 -33.03975 -28.78133 -28.39414 -25.72510 -22.91714 -21.46674 -20.88726 -19.49345 -18.21741 -17.11897 -16.59232 -15.87602 -15.56761 -15.17662 -14.66871 -14.08230 -13.81032 -13.45318 -13.19899 -12.68120 -12.48756 -12.23113 -12.11818 -11.95610 -11.50267 -10.68490 -10.55834 -10.09560 -9.16951 -8.52487 -6.41768 0.84943 1.52733 1.60688 1.72785 1.75069 1.79115 2.55952 3.17184 3.65615 3.73090 4.00486 4.18748 4.26970 4.38252 4.64419 4.75504 4.96350 5.01237 5.16569 5.23859 5.53762 5.63886 5.92219 6.13406 6.28370 6.63572 7.10956 7.51257 8.81119 Molecular weight = 194.07amu Principal moments of inertia in cm(-1) A = 0.047799 B = 0.013493 C = 0.012841 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 585.651269 B = 2074.648995 C = 2180.031601 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.917 5.917 2 C -0.007 4.007 3 Si 1.116 2.884 4 H -0.281 1.281 5 H -0.275 1.275 6 H -0.279 1.279 7 C -0.634 4.634 8 H 0.034 0.966 9 C 0.281 3.719 10 O -0.587 6.587 11 C -0.099 4.099 12 C -0.003 4.003 13 C -0.076 4.076 14 O -0.174 6.174 15 C -0.032 4.032 16 C -0.217 4.217 17 C -0.220 4.220 18 H 0.276 0.724 19 H 0.364 0.636 20 H 0.060 0.940 21 H 0.072 0.928 22 H 0.101 0.899 23 H 0.089 0.911 24 H 0.256 0.744 25 H 0.155 0.845 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.611 -7.329 -1.003 9.284 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.553 5.553 2 C -0.210 4.210 3 Si 0.938 3.062 4 H -0.206 1.206 5 H -0.201 1.201 6 H -0.205 1.205 7 C -0.672 4.672 8 H 0.052 0.948 9 C 0.242 3.758 10 O -0.393 6.393 11 C -0.137 4.137 12 C -0.040 4.040 13 C -0.125 4.125 14 O -0.072 6.072 15 C -0.099 4.099 16 C -0.236 4.236 17 C -0.221 4.221 18 H 0.088 0.912 19 H 0.210 0.790 20 H 0.078 0.922 21 H 0.090 0.910 22 H 0.120 0.880 23 H 0.107 0.893 24 H 0.271 0.729 25 H 0.172 0.828 Dipole moment (debyes) X Y Z Total from point charges 4.968 -5.928 -1.769 7.934 hybrid contribution 0.640 -1.472 0.912 1.846 sum 5.608 -7.400 -0.857 9.324 Atomic orbital electron populations 1.70699 1.07577 1.32222 1.44783 1.27064 0.96570 1.05525 0.91845 0.82949 0.73893 0.71651 0.77672 1.20589 1.20081 1.20502 1.22477 0.93937 0.92824 1.57941 0.94774 1.18196 0.85364 0.89039 0.83228 1.86359 1.39290 1.97006 1.16600 1.22377 0.96854 0.99142 0.95360 1.20577 0.92705 0.96015 0.94713 1.23284 0.98338 0.90991 0.99922 1.83766 1.46442 1.43258 1.33693 1.24837 1.01834 1.02446 0.80742 1.21508 1.01176 0.98943 1.01998 1.22477 1.02687 1.00486 0.96464 0.91175 0.79014 0.92172 0.90979 0.88039 0.89319 0.72858 0.82756 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -54.74 12.81 21.45 0.27 -54.46 15 2 C -0.01 -0.41 5.11 84.66 0.43 0.03 15 3 Si 1.12 50.06 29.91 68.60 2.05 52.11 15 4 H -0.28 -12.00 7.11 99.48 0.71 -11.29 15 5 H -0.28 -11.82 7.11 99.48 0.71 -11.12 15 6 H -0.28 -12.15 7.11 99.48 0.71 -11.44 15 7 C -0.63 -35.84 8.24 25.60 0.21 -35.63 15 8 H 0.03 1.99 7.77 -2.91 -0.02 1.97 15 9 C 0.28 14.52 0.76 -11.63 -0.01 14.51 15 10 O -0.59 -30.89 11.71 -148.98 -1.74 -32.64 15 11 C -0.10 -4.70 5.31 31.59 0.17 -4.54 15 12 C 0.00 -0.12 6.78 30.58 0.21 0.09 15 13 C -0.08 -3.22 8.21 25.02 0.21 -3.02 15 14 O -0.17 -6.48 10.66 -5.68 -0.06 -6.54 15 15 C -0.03 -1.00 12.08 66.95 0.81 -0.20 15 16 C -0.22 -8.25 10.92 22.21 0.24 -8.01 15 17 C -0.22 -10.16 5.87 -19.80 -0.12 -10.28 15 18 H 0.28 16.80 5.30 -92.71 -0.49 16.31 15 19 H 0.36 17.26 9.07 -74.06 -0.67 16.58 15 20 H 0.06 2.74 8.11 -2.39 -0.02 2.72 15 21 H 0.07 3.69 6.50 -2.39 -0.02 3.68 15 22 H 0.10 3.23 8.14 -2.39 -0.02 3.21 15 23 H 0.09 3.40 8.14 -2.38 -0.02 3.38 15 24 H 0.26 4.61 8.06 -2.91 -0.02 4.59 15 25 H 0.15 5.17 8.06 -2.91 -0.02 5.14 15 Total: -1.00 -68.31 218.83 3.49 -64.83 By element: Atomic # 1 Polarization: 22.93 SS G_CDS: 0.81 Total: 23.74 kcal Atomic # 6 Polarization: -49.19 SS G_CDS: 2.15 Total: -47.04 kcal Atomic # 7 Polarization: -54.74 SS G_CDS: 0.27 Total: -54.46 kcal Atomic # 8 Polarization: -37.37 SS G_CDS: -1.81 Total: -39.18 kcal Atomic # 14 Polarization: 50.06 SS G_CDS: 2.05 Total: 52.11 kcal Total: -68.31 3.49 -64.83 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260942706.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.453 kcal (2) G-P(sol) polarization free energy of solvation -68.314 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.861 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.486 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.828 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.375 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds