Wall clock time and date at job start Mon Mar 30 2020 02:04:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 N 1.28744 * 125.89836 * 2 1 4 4 N 1.28641 * 110.16082 * 180.02562 * 3 2 1 5 5 C 1.33844 * 108.84307 * 359.97438 * 4 3 2 6 6 C 1.35039 * 106.51833 * 359.97438 * 5 4 3 7 7 C 1.51070 * 110.37743 * 180.02562 * 6 5 4 8 8 C 1.54496 * 105.00033 * 16.77785 * 7 6 5 9 9 C 1.51113 * 143.17028 * 179.97438 * 5 4 3 10 10 H 1.09004 * 110.33524 * 282.07936 * 9 5 4 11 11 C 1.50699 * 110.33405 * 44.21016 * 9 5 4 12 12 H 1.07998 * 120.00068 * 118.54168 * 11 9 5 13 13 C 1.37878 * 119.99853 * 298.54553 * 11 9 5 14 14 N 1.31514 * 120.00064 * 359.97438 * 13 11 9 15 15 Si 1.86798 * 120.00053 * 179.97438 * 13 11 9 16 16 H 1.48500 * 109.47151 * 60.00119 * 15 13 11 17 17 H 1.48496 * 109.47141 * 180.02562 * 15 13 11 18 18 H 1.48493 * 109.47118 * 300.00045 * 15 13 11 19 19 H 1.08999 * 109.46840 * 89.98177 * 1 2 3 20 20 H 1.09000 * 109.46800 * 209.97537 * 1 2 3 21 21 H 1.08992 * 109.47519 * 329.98077 * 1 2 3 22 22 H 1.09002 * 110.33297 * 135.67376 * 7 6 5 23 23 H 1.08995 * 110.33490 * 257.91440 * 7 6 5 24 24 H 1.08994 * 110.93714 * 216.34650 * 8 7 6 25 25 H 1.09001 * 110.95159 * 92.69635 * 8 7 6 26 26 H 0.96992 * 120.00139 * 179.97438 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.2199 1.0429 0.0000 4 7 3.4581 0.6940 -0.0005 5 6 3.5306 -0.6425 -0.0004 6 6 2.2586 -1.0960 0.0009 7 6 2.2388 -2.6066 0.0019 8 6 3.6625 -3.0249 0.4318 9 6 4.5006 -1.8012 -0.0010 10 1 4.9069 -1.9545 -1.0009 11 6 5.6143 -1.5523 0.9832 12 1 5.7582 -2.2236 1.8169 13 6 6.4496 -0.4676 0.8194 14 7 6.2746 0.3495 -0.1961 15 14 7.8296 -0.1587 2.0397 16 1 8.7514 -1.3230 2.0497 17 1 8.5771 1.0616 1.6433 18 1 7.2572 0.0311 3.3967 19 1 -0.3633 0.0003 -1.0277 20 1 -0.3633 -0.8902 0.5135 21 1 -0.3634 0.8897 0.5141 22 1 1.5032 -2.9752 0.7168 23 1 2.0190 -2.9831 -0.9971 24 1 3.9815 -3.9223 -0.0982 25 1 3.7165 -3.1721 1.5105 26 1 6.8619 1.1128 -0.3112 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261019738.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:04:37 Heat of formation + Delta-G solvation = 85.629799 kcal Electronic energy + Delta-G solvation = -12064.561683 eV Core-core repulsion = 9952.008087 eV Total energy + Delta-G solvation = -2112.553595 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 193.091 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -43.92204 -37.89355 -35.17306 -34.31171 -30.02555 -29.34811 -28.17867 -25.60164 -23.24081 -21.57333 -20.82278 -18.52691 -17.65325 -17.15384 -16.35203 -15.38563 -14.77686 -14.09781 -14.06245 -13.85670 -13.59661 -13.43524 -13.25966 -12.69685 -12.39540 -12.20691 -11.67131 -11.61618 -11.04502 -10.92933 -10.49612 -10.42308 -9.34479 -7.98655 -6.13109 0.91787 1.41803 1.44801 1.51437 1.73163 2.09870 2.49890 3.29858 3.37387 3.98709 4.06376 4.35495 4.42585 4.48552 4.60515 4.76958 4.91013 5.08840 5.19503 5.32606 5.50705 5.65957 5.80958 5.93830 6.11459 6.33314 6.94777 7.54690 8.02390 9.06505 Molecular weight = 193.09amu Principal moments of inertia in cm(-1) A = 0.049979 B = 0.013438 C = 0.011403 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 560.099853 B = 2083.080721 C = 2454.828542 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.075 3.925 2 N -0.282 5.282 3 N -0.155 5.155 4 N -0.276 5.276 5 C 0.002 3.998 6 C -0.090 4.090 7 C -0.010 4.010 8 C -0.099 4.099 9 C 0.101 3.899 10 H 0.013 0.987 11 C -0.547 4.547 12 H 0.062 0.938 13 C 0.017 3.983 14 N -0.883 5.883 15 Si 0.948 3.052 16 H -0.261 1.261 17 H -0.291 1.291 18 H -0.279 1.279 19 H 0.103 0.897 20 H 0.123 0.877 21 H 0.103 0.897 22 H 0.105 0.895 23 H 0.102 0.898 24 H 0.097 0.903 25 H 0.069 0.931 26 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.187 -7.068 0.685 14.105 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 N -0.076 5.076 3 N -0.132 5.132 4 N -0.140 5.140 5 C -0.139 4.139 6 C -0.224 4.224 7 C -0.049 4.049 8 C -0.137 4.137 9 C 0.081 3.919 10 H 0.031 0.969 11 C -0.585 4.585 12 H 0.080 0.920 13 C -0.186 4.186 14 N -0.519 5.519 15 Si 0.774 3.226 16 H -0.186 1.186 17 H -0.217 1.217 18 H -0.205 1.205 19 H 0.121 0.879 20 H 0.141 0.859 21 H 0.121 0.879 22 H 0.123 0.877 23 H 0.120 0.880 24 H 0.116 0.884 25 H 0.088 0.912 26 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges -12.139 -5.279 0.581 13.250 hybrid contribution 0.874 -0.027 0.430 0.975 sum -11.265 -5.307 1.011 12.493 Atomic orbital electron populations 1.22573 0.70791 1.07056 1.06040 1.46884 1.09974 1.03071 1.47721 1.78323 0.97073 1.13195 1.24589 1.74703 1.07865 1.15090 1.16329 1.23624 0.96883 0.91196 1.02236 1.23463 0.91334 0.96000 1.11634 1.20591 0.98906 0.81533 1.03853 1.22457 0.92460 0.97261 1.01515 1.17922 0.91253 0.86820 0.95934 0.96869 1.21365 1.14109 1.11348 1.11659 0.91988 1.25791 0.99806 0.95987 0.96974 1.70150 1.37490 1.14054 1.30215 0.85779 0.79823 0.77579 0.79389 1.18555 1.21701 1.20518 0.87895 0.85866 0.87859 0.87704 0.87974 0.88443 0.91247 0.93712 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 1.58 11.39 127.77 1.46 3.04 15 2 N -0.28 -10.76 3.74 -355.56 -1.33 -12.10 15 3 N -0.15 -7.59 13.17 37.02 0.49 -7.10 15 4 N -0.28 -16.04 11.51 -48.41 -0.56 -16.60 15 5 C 0.00 0.09 6.61 41.65 0.28 0.36 15 6 C -0.09 -3.66 7.66 41.40 0.32 -3.34 15 7 C -0.01 -0.28 6.78 30.47 0.21 -0.07 15 8 C -0.10 -3.52 6.63 31.62 0.21 -3.31 15 9 C 0.10 5.17 2.82 -11.64 -0.03 5.13 15 10 H 0.01 0.75 8.14 -2.38 -0.02 0.73 15 11 C -0.55 -31.10 8.53 25.60 0.22 -30.88 15 12 H 0.06 3.35 7.63 -2.91 -0.02 3.33 15 13 C 0.02 1.00 5.32 84.65 0.45 1.45 15 14 N -0.88 -55.91 11.77 21.45 0.25 -55.66 15 15 Si 0.95 46.46 29.54 68.60 2.03 48.49 15 16 H -0.26 -11.93 7.11 99.48 0.71 -11.23 15 17 H -0.29 -14.27 7.11 99.48 0.71 -13.56 15 18 H -0.28 -13.55 7.11 99.48 0.71 -12.85 15 19 H 0.10 1.72 8.14 -2.39 -0.02 1.70 15 20 H 0.12 1.74 8.14 -2.39 -0.02 1.72 15 21 H 0.10 1.94 8.14 -2.39 -0.02 1.92 15 22 H 0.10 2.22 8.14 -2.39 -0.02 2.20 15 23 H 0.10 2.44 8.14 -2.39 -0.02 2.42 15 24 H 0.10 2.89 8.14 -2.39 -0.02 2.87 15 25 H 0.07 2.46 7.80 -2.39 -0.02 2.44 15 26 H 0.25 15.65 8.31 -92.71 -0.77 14.88 15 Total: -1.00 -79.17 227.52 5.15 -74.02 By element: Atomic # 1 Polarization: -4.60 SS G_CDS: 1.17 Total: -3.42 kcal Atomic # 6 Polarization: -30.73 SS G_CDS: 3.10 Total: -27.63 kcal Atomic # 7 Polarization: -90.31 SS G_CDS: -1.15 Total: -91.46 kcal Atomic # 14 Polarization: 46.46 SS G_CDS: 2.03 Total: 48.49 kcal Total: -79.17 5.15 -74.02 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261019738.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 159.651 kcal (2) G-P(sol) polarization free energy of solvation -79.173 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 80.477 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.152 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.021 kcal (6) G-S(sol) free energy of system = (1) + (5) 85.630 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds