Wall clock time and date at job start Mon Mar 30 2020 02:19:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53009 * 109.46745 * 2 1 4 4 C 1.52998 * 109.47059 * 119.99420 * 2 1 3 5 5 N 1.46505 * 109.46792 * 65.00783 * 4 2 1 6 6 C 1.36171 * 125.73914 * 264.97082 * 5 4 2 7 7 C 1.35968 * 109.05004 * 180.02562 * 6 5 4 8 8 C 1.39306 * 108.09147 * 359.73835 * 7 6 5 9 9 C 1.38014 * 125.74612 * 84.99799 * 5 4 2 10 10 C 1.39951 * 126.35473 * 359.97438 * 9 5 4 11 11 H 1.07994 * 120.00293 * 20.30989 * 10 9 5 12 12 C 1.40073 * 120.00003 * 200.30742 * 10 9 5 13 13 N 1.30854 * 119.99909 * 195.90778 * 12 10 9 14 14 Si 1.86801 * 119.99937 * 15.90672 * 12 10 9 15 15 H 1.48504 * 109.47120 * 270.00122 * 14 12 10 16 16 H 1.48498 * 109.47156 * 29.99624 * 14 12 10 17 17 H 1.48496 * 109.47028 * 149.99728 * 14 12 10 18 18 H 1.09000 * 109.47195 * 60.00571 * 1 2 3 19 19 H 1.09007 * 109.47086 * 180.02562 * 1 2 3 20 20 H 1.09001 * 109.47289 * 300.00019 * 1 2 3 21 21 H 1.09001 * 109.47289 * 239.99981 * 2 1 3 22 22 H 1.09001 * 109.46510 * 179.97438 * 3 2 1 23 23 H 1.09000 * 109.46807 * 299.99666 * 3 2 1 24 24 H 1.09001 * 109.47242 * 59.99952 * 3 2 1 25 25 H 1.08994 * 109.47752 * 305.00424 * 4 2 1 26 26 H 1.09003 * 109.47241 * 184.99914 * 4 2 1 27 27 H 1.08000 * 125.47406 * 359.97438 * 6 5 4 28 28 H 1.07996 * 125.95492 * 180.02562 * 7 6 5 29 29 H 1.07993 * 126.47535 * 180.27538 * 8 7 6 30 30 H 0.97001 * 120.00128 * 354.96691 * 13 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 2.0399 -0.7211 1.2493 5 7 1.6525 -2.1328 1.1906 6 6 0.5446 -2.6780 1.7647 7 6 0.5175 -4.0112 1.4989 8 6 1.6364 -4.3217 0.7293 9 6 2.3491 -3.1339 0.5447 10 6 3.5444 -2.9859 -0.1681 11 1 4.1761 -2.1281 0.0090 12 6 3.9215 -3.9505 -1.1112 13 7 5.1543 -3.9918 -1.5478 14 14 2.6643 -5.1780 -1.7456 15 1 2.6683 -6.3836 -0.8785 16 1 1.3147 -4.5589 -1.7263 17 1 3.0106 -5.5671 -3.1362 18 1 -0.3633 0.5137 -0.8900 19 1 -0.3633 -1.0277 0.0005 20 1 -0.3634 0.5138 0.8900 21 1 1.8933 -0.5138 -0.8900 22 1 3.1299 1.4426 0.0005 23 1 1.6765 1.9564 -0.8900 24 1 1.6765 1.9565 0.8900 25 1 1.6053 -0.2617 2.1370 26 1 3.1263 -0.6442 1.2952 27 1 -0.1935 -2.1384 2.3394 28 1 -0.2418 -4.7072 1.8235 29 1 1.9039 -5.2966 0.3494 30 1 5.7886 -3.3106 -1.2747 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261038759.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:19:46 Heat of formation + Delta-G solvation = 19.845985 kcal Electronic energy + Delta-G solvation = -12258.779111 eV Core-core repulsion = 10246.913259 eV Total energy + Delta-G solvation = -2011.865852 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 193.116 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -39.52433 -35.58585 -33.38226 -30.43257 -28.87287 -26.85668 -25.09805 -23.64862 -20.25901 -19.64798 -18.49685 -17.23016 -15.76818 -14.62920 -14.22936 -13.78509 -13.35081 -12.80132 -12.65135 -12.11831 -11.98946 -11.85006 -11.45167 -11.29476 -10.79847 -10.62927 -10.56365 -10.30336 -10.25429 -9.60697 -9.25103 -8.90542 -7.29300 -7.20577 -6.83600 -4.21677 3.29608 3.44460 3.74008 3.78527 4.25723 4.29327 4.34607 5.17452 5.21481 5.39564 5.44823 5.69729 5.82912 5.94160 6.05240 6.14020 6.23824 6.29937 6.36371 6.65288 6.68148 6.76870 6.96382 7.42793 7.58225 7.75247 7.92630 8.16578 8.67158 8.82954 9.01983 9.14521 10.28709 Molecular weight = 193.12amu Principal moments of inertia in cm(-1) A = 0.034375 B = 0.015046 C = 0.012199 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 814.345770 B = 1860.503336 C = 2294.729300 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.114 4.114 3 C -0.141 4.141 4 C 0.132 3.868 5 N -0.475 5.475 6 C -0.117 4.117 7 C -0.160 4.160 8 C -0.365 4.365 9 C 0.227 3.773 10 C -0.527 4.527 11 H 0.067 0.933 12 C 0.055 3.945 13 N -0.838 5.838 14 Si 1.084 2.916 15 H -0.282 1.282 16 H -0.262 1.262 17 H -0.301 1.301 18 H 0.047 0.953 19 H 0.066 0.934 20 H 0.045 0.955 21 H 0.082 0.918 22 H 0.054 0.946 23 H 0.054 0.946 24 H 0.050 0.950 25 H 0.065 0.935 26 H 0.072 0.928 27 H 0.127 0.873 28 H 0.105 0.895 29 H 0.112 0.888 30 H 0.280 0.720 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.120 6.719 1.988 9.303 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.133 4.133 3 C -0.199 4.199 4 C 0.008 3.992 5 N -0.159 5.159 6 C -0.240 4.240 7 C -0.186 4.186 8 C -0.387 4.387 9 C 0.116 3.884 10 C -0.562 4.562 11 H 0.085 0.915 12 C -0.163 4.163 13 N -0.463 5.463 14 Si 0.912 3.088 15 H -0.209 1.209 16 H -0.186 1.186 17 H -0.230 1.230 18 H 0.066 0.934 19 H 0.085 0.915 20 H 0.064 0.936 21 H 0.101 0.899 22 H 0.073 0.927 23 H 0.073 0.927 24 H 0.069 0.931 25 H 0.084 0.916 26 H 0.091 0.909 27 H 0.145 0.855 28 H 0.123 0.877 29 H 0.130 0.870 30 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -6.195 5.769 1.075 8.534 hybrid contribution 0.343 1.446 1.182 1.899 sum -5.853 7.216 2.256 9.561 Atomic orbital electron populations 1.21805 0.95232 1.02581 1.00414 1.21482 0.96294 0.95588 0.99934 1.21763 1.00988 0.95902 1.01284 1.21371 1.00055 0.80693 0.97035 1.44021 1.20044 1.05415 1.46383 1.20969 0.95202 0.94307 1.13538 1.20192 0.99751 0.94067 1.04550 1.20663 1.03356 0.96341 1.18303 1.18277 0.91909 0.85417 0.92751 1.19458 1.03804 1.10897 1.21997 0.91483 1.26938 0.98375 0.98422 0.92528 1.70608 1.02862 1.31387 1.41454 0.83452 0.75621 0.75323 0.74355 1.20891 1.18634 1.23001 0.93367 0.91523 0.93556 0.89931 0.92712 0.92711 0.93087 0.91629 0.90944 0.85532 0.87678 0.87020 0.90941 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.26 8.93 37.16 0.33 -1.92 16 2 C -0.11 -1.94 3.13 -90.62 -0.28 -2.22 16 3 C -0.14 -1.92 9.19 37.16 0.34 -1.58 16 4 C 0.13 2.50 5.26 -4.04 -0.02 2.48 16 5 N -0.48 -11.03 2.52 -114.07 -0.29 -11.32 16 6 C -0.12 -2.61 10.04 -16.44 -0.17 -2.77 16 7 C -0.16 -3.79 10.79 -40.00 -0.43 -4.22 16 8 C -0.36 -9.62 8.19 -38.62 -0.32 -9.94 16 9 C 0.23 6.07 6.23 -83.88 -0.52 5.55 16 10 C -0.53 -14.70 9.35 -38.25 -0.36 -15.06 16 11 H 0.07 1.90 7.48 -52.49 -0.39 1.51 16 12 C 0.05 1.53 5.50 -17.28 -0.10 1.43 16 13 N -0.84 -23.70 13.66 55.56 0.76 -22.94 16 14 Si 1.08 26.47 24.92 -169.99 -4.24 22.24 16 15 H -0.28 -6.69 6.59 56.52 0.37 -6.31 16 16 H -0.26 -6.40 6.68 56.52 0.38 -6.02 16 17 H -0.30 -7.13 7.11 56.52 0.40 -6.72 16 18 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 19 H 0.07 1.21 6.73 -51.93 -0.35 0.86 16 20 H 0.05 0.65 8.14 -51.93 -0.42 0.22 16 21 H 0.08 1.66 8.14 -51.93 -0.42 1.24 16 22 H 0.05 0.74 8.14 -51.93 -0.42 0.32 16 23 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 24 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 25 H 0.07 1.09 8.12 -51.93 -0.42 0.67 16 26 H 0.07 1.42 7.49 -51.93 -0.39 1.03 16 27 H 0.13 2.41 8.06 -52.49 -0.42 1.99 16 28 H 0.11 2.19 8.06 -52.49 -0.42 1.77 16 29 H 0.11 2.93 4.28 -52.49 -0.22 2.71 16 30 H 0.28 7.69 8.73 -40.82 -0.36 7.33 16 LS Contribution 245.90 15.07 3.71 3.71 Total: -1.00 -29.35 245.90 -5.94 -35.29 By element: Atomic # 1 Polarization: 5.65 SS G_CDS: -4.37 Total: 1.29 kcal Atomic # 6 Polarization: -26.74 SS G_CDS: -1.52 Total: -28.26 kcal Atomic # 7 Polarization: -34.73 SS G_CDS: 0.47 Total: -34.26 kcal Atomic # 14 Polarization: 26.47 SS G_CDS: -4.24 Total: 22.24 kcal Total LS contribution 3.71 Total: 3.71 kcal Total: -29.35 -5.94 -35.29 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261038759.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.141 kcal (2) G-P(sol) polarization free energy of solvation -29.350 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.790 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.944 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.295 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.846 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds