Wall clock time and date at job start Mon Mar 30 2020 02:19:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53009 * 109.46745 * 2 1 4 4 C 1.52998 * 109.47059 * 119.99420 * 2 1 3 5 5 N 1.46505 * 109.46792 * 65.00783 * 4 2 1 6 6 C 1.36171 * 125.73914 * 264.97082 * 5 4 2 7 7 C 1.35968 * 109.05004 * 180.02562 * 6 5 4 8 8 C 1.39306 * 108.09147 * 359.73835 * 7 6 5 9 9 C 1.38014 * 125.74612 * 84.99799 * 5 4 2 10 10 C 1.39951 * 126.35473 * 359.97438 * 9 5 4 11 11 H 1.07994 * 120.00293 * 20.30989 * 10 9 5 12 12 C 1.40073 * 120.00003 * 200.30742 * 10 9 5 13 13 N 1.30854 * 119.99909 * 195.90778 * 12 10 9 14 14 Si 1.86801 * 119.99937 * 15.90672 * 12 10 9 15 15 H 1.48504 * 109.47120 * 270.00122 * 14 12 10 16 16 H 1.48498 * 109.47156 * 29.99624 * 14 12 10 17 17 H 1.48496 * 109.47028 * 149.99728 * 14 12 10 18 18 H 1.09000 * 109.47195 * 60.00571 * 1 2 3 19 19 H 1.09007 * 109.47086 * 180.02562 * 1 2 3 20 20 H 1.09001 * 109.47289 * 300.00019 * 1 2 3 21 21 H 1.09001 * 109.47289 * 239.99981 * 2 1 3 22 22 H 1.09001 * 109.46510 * 179.97438 * 3 2 1 23 23 H 1.09000 * 109.46807 * 299.99666 * 3 2 1 24 24 H 1.09001 * 109.47242 * 59.99952 * 3 2 1 25 25 H 1.08994 * 109.47752 * 305.00424 * 4 2 1 26 26 H 1.09003 * 109.47241 * 184.99914 * 4 2 1 27 27 H 1.08000 * 125.47406 * 359.97438 * 6 5 4 28 28 H 1.07996 * 125.95492 * 180.02562 * 7 6 5 29 29 H 1.07993 * 126.47535 * 180.27538 * 8 7 6 30 30 H 0.97001 * 120.00128 * 354.96691 * 13 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 2.0399 -0.7211 1.2493 5 7 1.6525 -2.1328 1.1906 6 6 0.5446 -2.6780 1.7647 7 6 0.5175 -4.0112 1.4989 8 6 1.6364 -4.3217 0.7293 9 6 2.3491 -3.1339 0.5447 10 6 3.5444 -2.9859 -0.1681 11 1 4.1761 -2.1281 0.0090 12 6 3.9215 -3.9505 -1.1112 13 7 5.1543 -3.9918 -1.5478 14 14 2.6643 -5.1780 -1.7456 15 1 2.6683 -6.3836 -0.8785 16 1 1.3147 -4.5589 -1.7263 17 1 3.0106 -5.5671 -3.1362 18 1 -0.3633 0.5137 -0.8900 19 1 -0.3633 -1.0277 0.0005 20 1 -0.3634 0.5138 0.8900 21 1 1.8933 -0.5138 -0.8900 22 1 3.1299 1.4426 0.0005 23 1 1.6765 1.9564 -0.8900 24 1 1.6765 1.9565 0.8900 25 1 1.6053 -0.2617 2.1370 26 1 3.1263 -0.6442 1.2952 27 1 -0.1935 -2.1384 2.3394 28 1 -0.2418 -4.7072 1.8235 29 1 1.9039 -5.2966 0.3494 30 1 5.7886 -3.3106 -1.2747 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261038759.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:19:46 Heat of formation + Delta-G solvation = 2.813372 kcal Electronic energy + Delta-G solvation = -12259.517701 eV Core-core repulsion = 10246.913259 eV Total energy + Delta-G solvation = -2012.604442 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 193.116 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -41.37296 -37.01808 -35.45917 -32.11885 -30.87327 -28.05111 -26.67856 -25.65117 -22.03716 -21.26045 -20.36060 -19.16066 -17.61113 -16.11712 -15.72480 -15.67039 -15.27801 -14.53089 -14.22373 -13.78028 -13.48481 -13.27630 -13.08966 -12.85022 -12.57189 -12.40950 -12.00711 -11.80292 -11.67706 -11.59248 -11.27149 -10.94225 -9.35836 -9.11335 -8.86560 -6.31185 1.32846 1.45659 1.80926 1.85469 2.27137 2.40827 2.56288 3.23698 3.80214 3.93753 4.13042 4.36505 4.50842 4.62912 4.73892 4.77847 4.89780 4.94380 5.00438 5.02273 5.18086 5.36344 5.40594 5.43664 5.56538 5.68224 5.94728 6.16166 6.63261 6.89151 6.99922 7.24753 8.14919 Molecular weight = 193.12amu Principal moments of inertia in cm(-1) A = 0.034375 B = 0.015046 C = 0.012199 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 814.345770 B = 1860.503336 C = 2294.729300 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.110 4.110 3 C -0.134 4.134 4 C 0.123 3.877 5 N -0.474 5.474 6 C -0.087 4.087 7 C -0.187 4.187 8 C -0.378 4.378 9 C 0.190 3.810 10 C -0.542 4.542 11 H 0.044 0.956 12 C 0.019 3.981 13 N -0.863 5.863 14 Si 1.118 2.882 15 H -0.272 1.272 16 H -0.265 1.265 17 H -0.290 1.290 18 H 0.063 0.937 19 H 0.039 0.961 20 H 0.073 0.927 21 H 0.039 0.961 22 H 0.047 0.953 23 H 0.068 0.932 24 H 0.076 0.924 25 H 0.102 0.898 26 H 0.056 0.944 27 H 0.171 0.829 28 H 0.134 0.866 29 H 0.107 0.893 30 H 0.273 0.727 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.441 7.859 3.125 11.949 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.130 4.130 3 C -0.192 4.192 4 C 0.001 3.999 5 N -0.156 5.156 6 C -0.211 4.211 7 C -0.212 4.212 8 C -0.400 4.400 9 C 0.078 3.922 10 C -0.577 4.577 11 H 0.062 0.938 12 C -0.193 4.193 13 N -0.490 5.490 14 Si 0.943 3.057 15 H -0.199 1.199 16 H -0.190 1.190 17 H -0.218 1.218 18 H 0.082 0.918 19 H 0.058 0.942 20 H 0.092 0.908 21 H 0.058 0.942 22 H 0.066 0.934 23 H 0.087 0.913 24 H 0.095 0.905 25 H 0.120 0.880 26 H 0.074 0.926 27 H 0.188 0.812 28 H 0.152 0.848 29 H 0.124 0.876 30 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -8.497 6.939 2.215 11.191 hybrid contribution 0.950 1.202 0.958 1.807 sum -7.547 8.141 3.173 11.546 Atomic orbital electron populations 1.21753 0.93622 1.01440 1.02598 1.21419 0.97556 0.97068 0.96934 1.21709 1.00607 0.93586 1.03272 1.21708 0.99640 0.78894 0.99612 1.44335 1.19763 1.06628 1.44875 1.21686 0.94429 0.94168 1.10844 1.20570 1.00014 0.95518 1.05061 1.20942 1.04422 0.96113 1.18558 1.18285 0.92410 0.86915 0.94616 1.19421 1.04660 1.10568 1.23096 0.93785 1.27879 0.99114 0.99772 0.92565 1.70664 1.03342 1.32016 1.43027 0.82998 0.73804 0.74248 0.74669 1.19891 1.19004 1.21800 0.91813 0.94186 0.90826 0.94212 0.93398 0.91288 0.90490 0.87984 0.92581 0.81226 0.84820 0.87581 0.91697 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.86 8.93 71.98 0.64 -3.22 16 2 C -0.11 -3.59 3.13 -10.79 -0.03 -3.63 16 3 C -0.13 -3.29 9.19 71.99 0.66 -2.63 16 4 C 0.12 4.46 5.26 86.38 0.45 4.92 16 5 N -0.47 -21.30 2.52 -514.80 -1.30 -22.60 16 6 C -0.09 -3.56 10.04 83.49 0.84 -2.72 16 7 C -0.19 -8.34 10.79 22.00 0.24 -8.10 16 8 C -0.38 -19.68 8.19 22.89 0.19 -19.49 16 9 C 0.19 10.20 6.23 38.95 0.24 10.44 16 10 C -0.54 -31.39 9.35 23.13 0.22 -31.17 16 11 H 0.04 2.65 7.48 -2.91 -0.02 2.63 16 12 C 0.02 1.06 5.50 85.28 0.47 1.53 16 13 N -0.86 -50.62 13.66 21.86 0.30 -50.32 16 14 Si 1.12 54.40 24.92 68.60 1.71 56.11 16 15 H -0.27 -12.69 6.59 99.48 0.66 -12.03 16 16 H -0.27 -12.88 6.68 99.48 0.66 -12.22 16 17 H -0.29 -13.41 7.11 99.48 0.71 -12.70 16 18 H 0.06 1.59 8.14 -2.39 -0.02 1.57 16 19 H 0.04 1.33 6.73 -2.38 -0.02 1.32 16 20 H 0.07 1.68 8.14 -2.39 -0.02 1.66 16 21 H 0.04 1.62 8.14 -2.39 -0.02 1.60 16 22 H 0.05 1.23 8.14 -2.39 -0.02 1.21 16 23 H 0.07 1.51 8.14 -2.39 -0.02 1.49 16 24 H 0.08 1.51 8.14 -2.39 -0.02 1.49 16 25 H 0.10 2.96 8.12 -2.39 -0.02 2.94 16 26 H 0.06 2.21 7.49 -2.39 -0.02 2.19 16 27 H 0.17 5.46 8.06 -2.91 -0.02 5.44 16 28 H 0.13 5.10 8.06 -2.91 -0.02 5.08 16 29 H 0.11 5.54 4.28 -2.91 -0.01 5.52 16 30 H 0.27 15.76 8.73 -92.71 -0.81 14.95 16 Total: -1.00 -64.33 245.90 5.59 -58.74 By element: Atomic # 1 Polarization: 11.17 SS G_CDS: 0.97 Total: 12.14 kcal Atomic # 6 Polarization: -57.99 SS G_CDS: 3.92 Total: -54.08 kcal Atomic # 7 Polarization: -71.91 SS G_CDS: -1.00 Total: -72.91 kcal Atomic # 14 Polarization: 54.40 SS G_CDS: 1.71 Total: 56.11 kcal Total: -64.33 5.59 -58.74 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261038759.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.551 kcal (2) G-P(sol) polarization free energy of solvation -64.330 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.779 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.593 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.738 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.813 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds