Wall clock time and date at job start Mon Mar 30 2020 02:08:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.46501 * 119.99608 * 2 1 4 4 C 1.50703 * 109.46807 * 269.99707 * 3 2 1 5 5 H 1.07997 * 120.00016 * 0.02562 * 4 3 2 6 6 C 1.37876 * 119.99766 * 180.02562 * 4 3 2 7 7 N 1.31511 * 120.00566 * 0.02562 * 6 4 3 8 8 Si 1.86800 * 119.99855 * 180.02562 * 6 4 3 9 9 H 1.48495 * 109.47457 * 60.00060 * 8 6 4 10 10 H 1.48505 * 109.47425 * 180.02562 * 8 6 4 11 11 H 1.48498 * 109.47192 * 299.99923 * 8 6 4 12 12 C 1.39739 * 120.00368 * 179.97438 * 2 1 3 13 13 C 1.39271 * 120.87135 * 0.02562 * 12 2 1 14 14 N 1.32274 * 119.00708 * 179.74623 * 13 12 2 15 15 C 1.31785 * 120.89475 * 0.25183 * 14 13 12 16 16 N 1.31793 * 121.94192 * 0.02562 * 15 14 13 17 17 C 1.32267 * 120.89190 * 359.97438 * 16 15 14 18 18 H 1.09008 * 109.46684 * 269.99890 * 1 2 3 19 19 H 1.08990 * 109.47443 * 30.00159 * 1 2 3 20 20 H 1.09002 * 109.47077 * 150.00551 * 1 2 3 21 21 H 1.09000 * 109.47528 * 29.99974 * 3 2 1 22 22 H 1.08997 * 109.47041 * 150.00469 * 3 2 1 23 23 H 0.96999 * 120.00839 * 180.02562 * 7 6 4 24 24 H 1.08002 * 120.49943 * 0.02562 * 13 12 2 25 25 H 1.08003 * 119.03213 * 180.02562 * 15 14 13 26 26 H 1.08000 * 120.49065 * 180.02562 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1974 1.2688 0.0000 4 6 2.4486 1.7037 -1.4209 5 1 2.0974 1.0961 -2.2417 6 6 3.1267 2.8774 -1.6728 7 7 3.5549 3.6172 -0.6733 8 14 3.4375 3.4170 -3.4340 9 1 2.1397 3.5953 -4.1334 10 1 4.1811 4.7024 -3.4342 11 1 4.2392 2.3819 -4.1347 12 6 2.1638 -1.2101 0.0005 13 6 1.4859 -2.4267 0.0006 14 7 2.1843 -3.5501 -0.0041 15 6 3.5019 -3.5277 -0.0036 16 7 4.1801 -2.3977 0.0019 17 6 3.5563 -1.2314 0.0067 18 1 -0.3633 0.0000 1.0278 19 1 -0.3634 0.8899 -0.5138 20 1 -0.3633 -0.8901 -0.5138 21 1 1.6083 2.0284 0.5138 22 1 3.1498 1.1385 0.5137 23 1 4.0317 4.4431 -0.8505 24 1 0.4062 -2.4526 -0.0003 25 1 4.0420 -4.4630 -0.0079 26 1 4.1185 -0.3092 0.0107 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261044759.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:08:17 Heat of formation + Delta-G solvation = 52.249244 kcal Electronic energy + Delta-G solvation = -11662.978726 eV Core-core repulsion = 9548.977641 eV Total energy + Delta-G solvation = -2114.001085 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 193.091 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -40.27807 -36.48680 -33.12169 -32.75965 -30.06910 -28.27398 -25.58120 -23.89103 -22.97552 -20.84827 -17.24499 -16.89972 -16.59573 -15.74132 -14.67419 -14.41268 -13.65418 -13.33717 -13.14997 -12.85315 -12.26521 -11.80426 -11.33144 -11.10421 -10.77003 -10.58404 -10.34792 -10.17448 -10.14133 -9.41642 -8.62902 -8.55719 -6.83606 -6.18540 -4.31309 1.70398 1.83312 3.22123 3.27262 3.30047 3.82167 4.30317 4.49673 4.83533 4.97261 5.09915 5.17770 5.47483 5.62915 5.85519 5.96404 6.15626 6.46029 6.72675 7.02737 7.09940 7.56050 7.65499 7.88941 7.99712 8.11293 8.75281 8.78668 9.36756 10.83579 Molecular weight = 193.09amu Principal moments of inertia in cm(-1) A = 0.044735 B = 0.010718 C = 0.009744 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 625.758534 B = 2611.765048 C = 2872.927353 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.093 3.907 2 N -0.597 5.597 3 C 0.246 3.754 4 C -0.542 4.542 5 H 0.060 0.940 6 C 0.065 3.935 7 N -0.892 5.892 8 Si 0.899 3.101 9 H -0.276 1.276 10 H -0.285 1.285 11 H -0.275 1.275 12 C 0.143 3.857 13 C 0.037 3.963 14 N -0.485 5.485 15 C 0.189 3.811 16 N -0.483 5.483 17 C 0.077 3.923 18 H 0.043 0.957 19 H 0.075 0.925 20 H 0.057 0.943 21 H 0.038 0.962 22 H 0.037 0.963 23 H 0.267 0.733 24 H 0.156 0.844 25 H 0.181 0.819 26 H 0.173 0.827 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.926 -6.386 1.317 7.611 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.051 4.051 2 N -0.301 5.301 3 C 0.126 3.874 4 C -0.580 4.580 5 H 0.078 0.922 6 C -0.138 4.138 7 N -0.530 5.530 8 Si 0.726 3.274 9 H -0.201 1.201 10 H -0.210 1.210 11 H -0.200 1.200 12 C 0.030 3.970 13 C -0.135 4.135 14 N -0.198 5.198 15 C -0.100 4.100 16 N -0.195 5.195 17 C -0.097 4.097 18 H 0.062 0.938 19 H 0.093 0.907 20 H 0.075 0.925 21 H 0.056 0.944 22 H 0.055 0.945 23 H 0.077 0.923 24 H 0.173 0.827 25 H 0.198 0.802 26 H 0.190 0.810 Dipole moment (debyes) X Y Z Total from point charges -3.451 -6.859 1.366 7.799 hybrid contribution -0.301 1.263 -1.032 1.658 sum -3.751 -5.597 0.334 6.746 Atomic orbital electron populations 1.21596 0.80628 1.02516 1.00336 1.47141 1.04843 1.04042 1.74081 1.19416 0.92150 0.78390 0.97413 1.21482 1.37335 1.06906 0.92302 0.92196 1.24953 0.95079 0.96120 0.97645 1.69902 1.37710 1.14361 1.30985 0.86537 0.78515 0.77989 0.84347 1.20147 1.21024 1.20022 1.19754 0.94231 0.88570 0.94484 1.22570 1.00028 0.86485 1.04456 1.68026 1.09824 1.30832 1.11126 1.24212 0.87230 0.96190 1.02394 1.68168 1.41798 0.98777 1.10766 1.23025 0.90332 0.96718 0.99630 0.93834 0.90675 0.92465 0.94436 0.94519 0.92334 0.82726 0.80245 0.81028 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 1.46 10.23 59.85 0.61 2.07 15 2 N -0.60 -11.86 2.99 -180.75 -0.54 -12.40 15 3 C 0.25 5.78 4.96 -5.19 -0.03 5.75 15 4 C -0.54 -14.11 9.39 -34.44 -0.32 -14.44 15 5 H 0.06 1.59 7.81 -52.49 -0.41 1.18 15 6 C 0.07 1.74 5.46 -17.82 -0.10 1.64 15 7 N -0.89 -24.64 13.29 55.43 0.74 -23.90 15 8 Si 0.90 20.71 29.54 -169.99 -5.02 15.69 15 9 H -0.28 -6.27 7.11 56.52 0.40 -5.87 15 10 H -0.28 -6.48 7.11 56.52 0.40 -6.08 15 11 H -0.27 -6.37 7.11 56.52 0.40 -5.97 15 12 C 0.14 2.81 6.58 -83.49 -0.55 2.26 15 13 C 0.04 0.65 10.47 -16.98 -0.18 0.47 15 14 N -0.49 -8.74 10.43 -14.43 -0.15 -8.89 15 15 C 0.19 3.33 12.27 -92.16 -1.13 2.20 15 16 N -0.48 -9.48 10.43 -14.43 -0.15 -9.63 15 17 C 0.08 1.58 10.47 -16.98 -0.18 1.40 15 18 H 0.04 0.60 8.14 -51.92 -0.42 0.18 15 19 H 0.07 1.20 8.07 -51.93 -0.42 0.78 15 20 H 0.06 0.77 6.27 -51.93 -0.33 0.45 15 21 H 0.04 0.92 8.07 -51.93 -0.42 0.50 15 22 H 0.04 0.91 6.26 -51.93 -0.33 0.58 15 23 H 0.27 7.03 8.31 -40.82 -0.34 6.69 15 24 H 0.16 2.29 6.29 -52.49 -0.33 1.96 15 25 H 0.18 2.52 8.06 -52.48 -0.42 2.10 15 26 H 0.17 3.70 6.28 -52.49 -0.33 3.37 15 LS Contribution 231.40 15.07 3.49 3.49 Total: -1.00 -28.36 231.40 -6.05 -34.41 By element: Atomic # 1 Polarization: 2.42 SS G_CDS: -2.54 Total: -0.12 kcal Atomic # 6 Polarization: 3.22 SS G_CDS: -1.87 Total: 1.35 kcal Atomic # 7 Polarization: -54.72 SS G_CDS: -0.11 Total: -54.82 kcal Atomic # 14 Polarization: 20.71 SS G_CDS: -5.02 Total: 15.69 kcal Total LS contribution 3.49 Total: 3.49 kcal Total: -28.36 -6.05 -34.41 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261044759.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.661 kcal (2) G-P(sol) polarization free energy of solvation -28.363 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 58.298 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.049 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.412 kcal (6) G-S(sol) free energy of system = (1) + (5) 52.249 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds