Wall clock time and date at job start Mon Mar 30 2020 02:05:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46901 * 1 3 3 C 1.48149 * 110.99901 * 2 1 4 4 C 1.51091 * 105.60819 * 214.13547 * 3 2 1 5 5 N 1.35843 * 144.16651 * 197.20580 * 4 3 2 6 6 H 0.97002 * 124.85347 * 0.03611 * 5 4 3 7 7 N 1.28538 * 110.29582 * 180.02562 * 5 4 3 8 8 C 1.32867 * 109.91307 * 0.02562 * 7 5 4 9 9 C 1.41420 * 126.61910 * 180.02562 * 8 7 5 10 10 H 1.08002 * 120.00185 * 174.25011 * 9 8 7 11 11 C 1.39857 * 119.99929 * 354.24167 * 9 8 7 12 12 N 1.30899 * 119.99980 * 6.00782 * 11 9 8 13 13 Si 1.86796 * 120.00016 * 186.00651 * 11 9 8 14 14 H 1.48498 * 109.47355 * 94.98506 * 13 11 9 15 15 H 1.48506 * 109.46842 * 214.98140 * 13 11 9 16 16 H 1.48498 * 109.47146 * 334.98065 * 13 11 9 17 17 C 1.35082 * 108.62683 * 17.20550 * 4 3 2 18 18 C 1.48195 * 110.99828 * 245.64643 * 2 1 3 19 19 H 1.08999 * 109.47526 * 60.12737 * 1 2 3 20 20 H 1.09002 * 109.47490 * 180.12804 * 1 2 3 21 21 H 1.09006 * 109.46851 * 300.12555 * 1 2 3 22 22 H 1.08992 * 110.22262 * 333.16834 * 3 2 1 23 23 H 1.09000 * 110.22313 * 95.10530 * 3 2 1 24 24 H 0.96993 * 120.00016 * 179.97438 * 12 11 9 25 25 H 1.08994 * 110.23604 * 264.83815 * 18 2 1 26 26 H 1.08999 * 110.23304 * 26.81007 * 18 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9999 1.3831 0.0000 4 6 3.2701 1.3310 -0.8166 5 7 4.4234 1.9894 -1.1024 6 1 4.6871 2.8390 -0.7157 7 7 5.1154 1.3256 -1.9583 8 6 4.4767 0.2079 -2.2875 9 6 4.9191 -0.7795 -3.1981 10 1 4.3573 -1.6941 -3.3179 11 6 6.0839 -0.5715 -3.9438 12 7 6.8280 0.4809 -3.7154 13 14 6.5778 -1.7956 -5.2655 14 1 6.0749 -1.3311 -6.5833 15 1 8.0581 -1.9045 -5.3110 16 1 5.9930 -3.1244 -4.9529 17 6 3.2666 0.1952 -1.5478 18 6 2.0001 -0.5705 -1.2604 19 1 -0.3634 0.5118 -0.8911 20 1 -0.3634 -1.0277 0.0023 21 1 -0.3633 0.5158 0.8889 22 1 1.2829 2.0619 -0.4616 23 1 2.2199 1.7023 1.0187 24 1 7.6360 0.6249 -4.2323 25 1 2.2210 -1.6299 -1.1310 26 1 1.2830 -0.4303 -2.0692 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261068842.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:05:31 Heat of formation + Delta-G solvation = 72.228466 kcal Electronic energy + Delta-G solvation = -11812.989139 eV Core-core repulsion = 9699.854419 eV Total energy + Delta-G solvation = -2113.134721 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 193.091 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -42.68338 -38.76893 -35.35532 -32.32096 -31.59363 -28.73379 -27.51274 -26.60752 -22.70943 -21.97993 -20.48570 -18.33381 -18.08338 -16.70601 -16.46609 -15.59372 -15.24150 -14.86646 -14.57000 -13.79673 -13.45673 -13.02415 -12.90718 -12.83922 -12.55069 -12.25278 -12.21963 -11.62228 -11.20063 -10.57473 -9.81585 -9.54383 -8.84602 -8.32410 -6.27040 1.40738 1.43065 1.58141 1.58853 2.32577 2.34580 2.49125 3.15883 3.56352 3.86411 4.02601 4.44233 4.48819 4.59266 4.71212 4.76388 4.94176 5.05401 5.19437 5.44087 5.46272 5.77173 5.89818 6.13768 6.38582 6.94322 6.94978 7.25360 8.24775 8.68379 Molecular weight = 193.09amu Principal moments of inertia in cm(-1) A = 0.059147 B = 0.010901 C = 0.009323 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 473.282901 B = 2567.953621 C = 3002.495122 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.013 3.987 2 N -0.516 5.516 3 C 0.136 3.864 4 C -0.044 4.044 5 N -0.410 5.410 6 H 0.433 0.567 7 N -0.361 5.361 8 C 0.181 3.819 9 C -0.486 4.486 10 H 0.080 0.920 11 C 0.023 3.977 12 N -0.824 5.824 13 Si 0.986 3.014 14 H -0.267 1.267 15 H -0.273 1.273 16 H -0.256 1.256 17 C -0.323 4.323 18 C 0.135 3.865 19 H 0.034 0.966 20 H 0.082 0.918 21 H 0.092 0.908 22 H 0.075 0.925 23 H 0.102 0.898 24 H 0.273 0.727 25 H 0.068 0.932 26 H 0.048 0.952 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.650 0.591 4.442 10.640 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 N -0.240 5.240 3 C 0.007 3.993 4 C -0.174 4.174 5 N -0.117 5.117 6 H 0.275 0.725 7 N -0.194 5.194 8 C 0.032 3.968 9 C -0.525 4.525 10 H 0.098 0.902 11 C -0.191 4.191 12 N -0.454 5.454 13 Si 0.808 3.192 14 H -0.192 1.192 15 H -0.198 1.198 16 H -0.180 1.180 17 C -0.336 4.336 18 C 0.006 3.994 19 H 0.053 0.947 20 H 0.101 0.899 21 H 0.111 0.889 22 H 0.092 0.908 23 H 0.120 0.880 24 H 0.083 0.917 25 H 0.086 0.914 26 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges -8.348 1.035 4.698 9.635 hybrid contribution -0.186 0.118 -1.036 1.059 sum -8.534 1.153 3.663 9.358 Atomic orbital electron populations 1.22722 0.85224 1.03547 1.01995 1.65475 1.10400 1.14308 1.33844 1.21014 0.88442 0.91184 0.98694 1.22608 0.93876 0.96442 1.04483 1.42869 1.13382 1.20547 1.34918 0.72520 1.74794 1.20975 1.10001 1.13622 1.19103 0.89475 0.92736 0.95536 1.18931 1.09358 1.03022 1.21141 0.90225 1.26736 0.95227 0.97640 0.99533 1.70090 1.11903 1.27077 1.36325 0.85136 0.77679 0.78725 0.77692 1.19179 1.19808 1.17972 1.21547 1.00857 1.02107 1.09107 1.20550 0.90974 0.97913 0.89927 0.94738 0.89933 0.88899 0.90758 0.88027 0.91742 0.91406 0.93379 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.29 9.35 127.69 1.19 1.49 15 2 N -0.52 -16.71 5.81 -923.68 -5.36 -22.07 15 3 C 0.14 4.34 6.63 85.44 0.57 4.90 15 4 C -0.04 -1.92 8.27 41.34 0.34 -1.57 15 5 N -0.41 -19.41 6.86 -47.35 -0.32 -19.73 15 6 H 0.43 16.53 8.96 -219.95 -1.97 14.56 15 7 N -0.36 -21.16 10.53 -51.82 -0.55 -21.71 15 8 C 0.18 10.82 6.77 40.66 0.28 11.09 15 9 C -0.49 -29.04 9.41 23.45 0.22 -28.82 15 10 H 0.08 4.52 7.85 -2.91 -0.02 4.49 15 11 C 0.02 1.28 5.49 85.22 0.47 1.74 15 12 N -0.82 -49.17 12.00 21.81 0.26 -48.91 15 13 Si 0.99 42.42 29.56 68.60 2.03 44.45 15 14 H -0.27 -11.03 7.11 99.48 0.71 -10.32 15 15 H -0.27 -11.26 7.11 99.48 0.71 -10.55 15 16 H -0.26 -10.51 7.11 99.48 0.71 -9.80 15 17 C -0.32 -16.35 7.13 -19.68 -0.14 -16.49 15 18 C 0.13 5.38 6.63 85.33 0.57 5.94 15 19 H 0.03 0.75 7.90 -2.39 -0.02 0.73 15 20 H 0.08 1.67 8.14 -2.39 -0.02 1.65 15 21 H 0.09 1.62 8.14 -2.38 -0.02 1.60 15 22 H 0.07 2.03 7.76 -2.39 -0.02 2.01 15 23 H 0.10 2.74 8.14 -2.39 -0.02 2.72 15 24 H 0.27 14.87 8.30 -92.71 -0.77 14.10 15 25 H 0.07 2.73 8.14 -2.39 -0.02 2.71 15 26 H 0.05 1.80 7.67 -2.39 -0.02 1.78 15 Total: -1.00 -72.76 226.76 -1.23 -73.99 By element: Atomic # 1 Polarization: 16.47 SS G_CDS: -0.78 Total: 15.69 kcal Atomic # 6 Polarization: -25.20 SS G_CDS: 3.49 Total: -21.71 kcal Atomic # 7 Polarization: -106.45 SS G_CDS: -5.97 Total: -112.42 kcal Atomic # 14 Polarization: 42.42 SS G_CDS: 2.03 Total: 44.45 kcal Total: -72.76 -1.23 -73.99 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261068842.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 146.221 kcal (2) G-P(sol) polarization free energy of solvation -72.762 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 73.458 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.230 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.992 kcal (6) G-S(sol) free energy of system = (1) + (5) 72.228 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds