Wall clock time and date at job start Mon Mar 30 2020 02:17:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52992 * 109.47033 * 2 1 4 4 C 1.53003 * 109.47342 * 239.99586 * 2 1 3 5 5 C 1.50699 * 109.46682 * 119.99534 * 2 1 3 6 6 C 1.34327 * 125.29982 * 184.71664 * 5 2 1 7 7 C 1.46977 * 106.48605 * 180.26609 * 6 5 2 8 8 C 1.41349 * 127.11261 * 180.02562 * 7 6 5 9 9 H 1.07997 * 120.00340 * 172.65864 * 8 7 6 10 10 C 1.39676 * 119.99984 * 352.65973 * 8 7 6 11 11 N 1.31060 * 120.00004 * 6.26571 * 10 8 7 12 12 Si 1.86795 * 120.00175 * 186.26170 * 10 8 7 13 13 H 1.48500 * 109.47198 * 94.97508 * 12 10 8 14 14 H 1.48501 * 109.47064 * 214.97556 * 12 10 8 15 15 H 1.48501 * 109.47222 * 334.97188 * 12 10 8 16 16 C 1.39263 * 105.77718 * 0.02562 * 7 6 5 17 17 N 1.34922 * 107.93002 * 359.97438 * 16 7 6 18 18 H 0.96996 * 124.79336 * 180.02562 * 17 16 7 19 19 H 1.09001 * 109.47048 * 300.00384 * 1 2 3 20 20 H 1.09005 * 109.46900 * 60.00615 * 1 2 3 21 21 H 1.09004 * 109.47109 * 180.02562 * 1 2 3 22 22 H 1.09004 * 109.46991 * 179.97438 * 3 2 1 23 23 H 1.09005 * 109.47216 * 299.99765 * 3 2 1 24 24 H 1.09001 * 109.47516 * 59.99903 * 3 2 1 25 25 H 1.08996 * 109.47035 * 300.00281 * 4 2 1 26 26 H 1.09000 * 109.46619 * 59.99882 * 4 2 1 27 27 H 1.08990 * 109.46825 * 179.97438 * 4 2 1 28 28 H 1.07997 * 126.76229 * 0.23196 * 6 5 2 29 29 H 0.96996 * 119.99771 * 179.97438 * 11 10 8 30 30 H 1.08005 * 126.03944 * 180.02562 * 16 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0401 -0.7213 -1.2492 5 6 2.0323 -0.7103 1.2305 6 6 3.3211 -0.8161 1.5941 7 6 3.3398 -1.5899 2.8435 8 6 4.4743 -1.9554 3.6034 9 1 4.3498 -2.4247 4.5681 10 6 5.7564 -1.7096 3.1066 11 7 5.9098 -1.0313 1.9957 12 14 7.2523 -2.3474 4.0256 13 1 7.6652 -3.6539 3.4530 14 1 8.3665 -1.3746 3.8932 15 1 6.9146 -2.5207 5.4613 16 6 2.0088 -1.8885 3.1240 17 7 1.2481 -1.3526 2.1471 18 1 0.2812 -1.4143 2.1017 19 1 -0.3633 0.5139 0.8900 20 1 -0.3633 0.5138 -0.8901 21 1 -0.3633 -1.0277 0.0005 22 1 3.1300 1.4424 0.0005 23 1 1.6767 1.9563 -0.8900 24 1 1.6767 1.9563 0.8900 25 1 1.6768 -1.7490 -1.2491 26 1 1.6767 -0.2075 -2.1392 27 1 3.1300 -0.7209 -1.2493 28 1 4.1754 -0.4126 1.0710 29 1 6.8002 -0.8603 1.6510 30 1 1.6489 -2.4493 3.9740 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261130652.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:17:25 Heat of formation + Delta-G solvation = 19.448936 kcal Electronic energy + Delta-G solvation = -12113.286262 eV Core-core repulsion = 10101.403192 eV Total energy + Delta-G solvation = -2011.883069 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 193.116 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -39.27834 -35.54144 -33.11864 -29.24434 -27.51935 -26.67103 -26.43330 -24.41688 -20.34813 -18.92010 -17.98996 -16.41731 -15.33182 -14.54297 -13.79562 -13.40336 -13.29469 -12.50482 -12.28729 -12.03836 -11.58441 -11.53504 -11.20019 -11.05455 -10.88952 -10.79011 -10.39561 -10.38564 -10.09019 -9.79201 -9.20631 -8.97131 -6.92415 -6.46918 -6.19137 -3.78018 3.18821 3.29259 3.33775 3.89287 4.28192 4.57631 4.86822 5.37530 5.48006 5.50772 5.85471 5.95631 6.06066 6.09667 6.20235 6.23025 6.46127 6.48721 6.67786 6.79693 6.90543 6.91428 7.50617 7.60773 7.85951 8.12733 8.50951 8.69425 9.11154 9.28173 9.47903 9.52092 10.77455 Molecular weight = 193.12amu Principal moments of inertia in cm(-1) A = 0.055383 B = 0.010609 C = 0.009486 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 505.444895 B = 2638.566927 C = 2951.056037 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.009 3.991 3 C -0.131 4.131 4 C -0.131 4.131 5 C -0.019 4.019 6 C -0.185 4.185 7 C 0.034 3.966 8 C -0.444 4.444 9 H 0.063 0.937 10 C 0.068 3.932 11 N -0.830 5.830 12 Si 0.904 3.096 13 H -0.276 1.276 14 H -0.283 1.283 15 H -0.268 1.268 16 C -0.184 4.184 17 N -0.572 5.572 18 H 0.381 0.619 19 H 0.051 0.949 20 H 0.052 0.948 21 H 0.049 0.951 22 H 0.063 0.937 23 H 0.044 0.956 24 H 0.050 0.950 25 H 0.048 0.952 26 H 0.044 0.956 27 H 0.062 0.938 28 H 0.150 0.850 29 H 0.266 0.734 30 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.061 2.250 -4.493 7.873 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C 0.008 3.992 3 C -0.188 4.188 4 C -0.189 4.189 5 C -0.129 4.129 6 C -0.213 4.213 7 C 0.027 3.973 8 C -0.478 4.478 9 H 0.081 0.919 10 C -0.142 4.142 11 N -0.461 5.461 12 Si 0.731 3.269 13 H -0.202 1.202 14 H -0.208 1.208 15 H -0.193 1.193 16 C -0.309 4.309 17 N -0.170 5.170 18 H 0.214 0.786 19 H 0.070 0.930 20 H 0.071 0.929 21 H 0.068 0.932 22 H 0.082 0.918 23 H 0.063 0.937 24 H 0.069 0.931 25 H 0.068 0.932 26 H 0.063 0.937 27 H 0.081 0.919 28 H 0.167 0.833 29 H 0.076 0.924 30 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges -5.985 2.301 -4.588 7.884 hybrid contribution 0.303 -0.453 0.530 0.760 sum -5.682 1.848 -4.058 7.223 Atomic orbital electron populations 1.21883 0.96022 1.01030 1.01165 1.18887 0.93559 0.94507 0.92274 1.21813 1.02050 0.94758 1.00212 1.21830 1.02003 0.99529 0.95533 1.19783 0.91849 1.06707 0.94522 1.22309 0.93254 1.06216 0.99566 1.18500 0.90165 0.95050 0.93557 1.18712 0.89656 1.35968 1.03446 0.91884 1.25636 0.99836 0.94018 0.94749 1.69814 1.22984 1.33775 1.19555 0.86384 0.81248 0.78892 0.80409 1.20232 1.20829 1.19284 1.21472 0.91689 1.18235 0.99548 1.40832 1.06524 1.47875 1.21793 0.78641 0.92995 0.92885 0.93175 0.91797 0.93693 0.93096 0.93242 0.93681 0.91870 0.83316 0.92352 0.85446 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.12 7.50 37.16 0.28 -1.84 16 2 C 0.01 0.16 0.92 -155.66 -0.14 0.01 16 3 C -0.13 -2.20 8.29 37.15 0.31 -1.89 16 4 C -0.13 -2.21 8.38 37.16 0.31 -1.89 16 5 C -0.02 -0.42 5.55 -81.83 -0.45 -0.88 16 6 C -0.18 -4.97 9.05 -37.42 -0.34 -5.31 16 7 C 0.03 0.97 6.09 -104.79 -0.64 0.34 16 8 C -0.44 -12.93 9.40 -37.86 -0.36 -13.29 16 9 H 0.06 1.78 7.85 -52.49 -0.41 1.37 16 10 C 0.07 1.90 5.48 -17.34 -0.10 1.80 16 11 N -0.83 -23.31 10.47 55.54 0.58 -22.73 16 12 Si 0.90 20.72 29.56 -169.99 -5.03 15.70 16 13 H -0.28 -6.26 7.11 56.52 0.40 -5.86 16 14 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16 15 H -0.27 -6.07 7.11 56.52 0.40 -5.67 16 16 C -0.18 -4.66 12.01 -15.81 -0.19 -4.85 16 17 N -0.57 -12.64 5.67 -8.45 -0.05 -12.69 16 18 H 0.38 7.02 7.82 -40.82 -0.32 6.70 16 19 H 0.05 0.75 8.14 -51.93 -0.42 0.33 16 20 H 0.05 0.67 8.14 -51.93 -0.42 0.24 16 21 H 0.05 0.72 7.86 -51.93 -0.41 0.31 16 22 H 0.06 1.17 7.84 -51.93 -0.41 0.76 16 23 H 0.04 0.62 8.14 -51.93 -0.42 0.20 16 24 H 0.05 0.87 8.14 -51.93 -0.42 0.44 16 25 H 0.05 0.84 8.14 -51.93 -0.42 0.41 16 26 H 0.04 0.63 8.14 -51.93 -0.42 0.20 16 27 H 0.06 1.15 8.05 -51.93 -0.42 0.73 16 28 H 0.15 4.19 6.02 -52.49 -0.32 3.88 16 29 H 0.27 6.89 8.30 -40.82 -0.34 6.56 16 30 H 0.13 2.98 8.06 -52.48 -0.42 2.56 16 LS Contribution 250.37 15.07 3.77 3.77 Total: -1.00 -30.11 250.37 -6.41 -36.52 By element: Atomic # 1 Polarization: 11.60 SS G_CDS: -4.37 Total: 7.23 kcal Atomic # 6 Polarization: -26.48 SS G_CDS: -1.32 Total: -27.80 kcal Atomic # 7 Polarization: -35.95 SS G_CDS: 0.53 Total: -35.42 kcal Atomic # 14 Polarization: 20.72 SS G_CDS: -5.03 Total: 15.70 kcal Total LS contribution 3.77 Total: 3.77 kcal Total: -30.11 -6.41 -36.52 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261130652.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.968 kcal (2) G-P(sol) polarization free energy of solvation -30.109 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.859 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.410 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.519 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.449 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds