Wall clock time and date at job start Mon Mar 30 2020 02:17:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52992 * 109.47033 * 2 1 4 4 C 1.53003 * 109.47342 * 239.99586 * 2 1 3 5 5 C 1.50699 * 109.46682 * 119.99534 * 2 1 3 6 6 C 1.34327 * 125.29982 * 184.71664 * 5 2 1 7 7 C 1.46977 * 106.48605 * 180.26609 * 6 5 2 8 8 C 1.41349 * 127.11261 * 180.02562 * 7 6 5 9 9 H 1.07997 * 120.00340 * 172.65864 * 8 7 6 10 10 C 1.39676 * 119.99984 * 352.65973 * 8 7 6 11 11 N 1.31060 * 120.00004 * 6.26571 * 10 8 7 12 12 Si 1.86795 * 120.00175 * 186.26170 * 10 8 7 13 13 H 1.48500 * 109.47198 * 94.97508 * 12 10 8 14 14 H 1.48501 * 109.47064 * 214.97556 * 12 10 8 15 15 H 1.48501 * 109.47222 * 334.97188 * 12 10 8 16 16 C 1.39263 * 105.77718 * 0.02562 * 7 6 5 17 17 N 1.34922 * 107.93002 * 359.97438 * 16 7 6 18 18 H 0.96996 * 124.79336 * 180.02562 * 17 16 7 19 19 H 1.09001 * 109.47048 * 300.00384 * 1 2 3 20 20 H 1.09005 * 109.46900 * 60.00615 * 1 2 3 21 21 H 1.09004 * 109.47109 * 180.02562 * 1 2 3 22 22 H 1.09004 * 109.46991 * 179.97438 * 3 2 1 23 23 H 1.09005 * 109.47216 * 299.99765 * 3 2 1 24 24 H 1.09001 * 109.47516 * 59.99903 * 3 2 1 25 25 H 1.08996 * 109.47035 * 300.00281 * 4 2 1 26 26 H 1.09000 * 109.46619 * 59.99882 * 4 2 1 27 27 H 1.08990 * 109.46825 * 179.97438 * 4 2 1 28 28 H 1.07997 * 126.76229 * 0.23196 * 6 5 2 29 29 H 0.96996 * 119.99771 * 179.97438 * 11 10 8 30 30 H 1.08005 * 126.03944 * 180.02562 * 16 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0401 -0.7213 -1.2492 5 6 2.0323 -0.7103 1.2305 6 6 3.3211 -0.8161 1.5941 7 6 3.3398 -1.5899 2.8435 8 6 4.4743 -1.9554 3.6034 9 1 4.3498 -2.4247 4.5681 10 6 5.7564 -1.7096 3.1066 11 7 5.9098 -1.0313 1.9957 12 14 7.2523 -2.3474 4.0256 13 1 7.6652 -3.6539 3.4530 14 1 8.3665 -1.3746 3.8932 15 1 6.9146 -2.5207 5.4613 16 6 2.0088 -1.8885 3.1240 17 7 1.2481 -1.3526 2.1471 18 1 0.2812 -1.4143 2.1017 19 1 -0.3633 0.5139 0.8900 20 1 -0.3633 0.5138 -0.8901 21 1 -0.3633 -1.0277 0.0005 22 1 3.1300 1.4424 0.0005 23 1 1.6767 1.9563 -0.8900 24 1 1.6767 1.9563 0.8900 25 1 1.6768 -1.7490 -1.2491 26 1 1.6767 -0.2075 -2.1392 27 1 3.1300 -0.7209 -1.2493 28 1 4.1754 -0.4126 1.0710 29 1 6.8002 -0.8603 1.6510 30 1 1.6489 -2.4493 3.9740 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261130652.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:17:25 Heat of formation + Delta-G solvation = 1.504777 kcal Electronic energy + Delta-G solvation = -12114.064379 eV Core-core repulsion = 10101.403192 eV Total energy + Delta-G solvation = -2012.661187 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 193.116 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -41.12545 -37.05335 -35.17400 -31.22819 -29.32545 -28.01550 -27.85910 -26.42079 -21.99521 -20.95545 -19.86472 -18.24457 -17.20677 -16.45909 -15.19077 -14.90296 -14.80707 -14.43874 -13.97955 -13.69205 -13.00393 -12.94671 -12.90846 -12.82842 -12.66372 -12.51364 -11.97121 -11.75930 -11.73718 -11.58890 -11.17521 -10.98780 -8.98455 -8.40281 -8.24359 -5.92038 1.36312 1.40865 1.54508 1.97661 2.35329 2.54709 3.11368 3.69794 3.99252 4.12485 4.21505 4.63259 4.78778 4.84960 4.93210 4.93976 5.04627 5.09164 5.18612 5.28544 5.41751 5.49470 5.53942 5.55138 5.91759 6.09109 6.42487 6.65846 7.04538 7.30202 7.38002 7.60666 8.72596 Molecular weight = 193.12amu Principal moments of inertia in cm(-1) A = 0.055383 B = 0.010609 C = 0.009486 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 505.444895 B = 2638.566927 C = 2951.056037 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C 0.004 3.996 3 C -0.127 4.127 4 C -0.128 4.128 5 C 0.006 3.994 6 C -0.230 4.230 7 C -0.019 4.019 8 C -0.484 4.484 9 H 0.057 0.943 10 C 0.019 3.981 11 N -0.857 5.857 12 Si 0.980 3.020 13 H -0.269 1.269 14 H -0.272 1.272 15 H -0.264 1.264 16 C -0.187 4.187 17 N -0.555 5.555 18 H 0.404 0.596 19 H 0.053 0.947 20 H 0.084 0.916 21 H 0.054 0.946 22 H 0.037 0.963 23 H 0.083 0.917 24 H 0.044 0.956 25 H 0.045 0.955 26 H 0.083 0.917 27 H 0.036 0.964 28 H 0.127 0.873 29 H 0.271 0.729 30 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.352 2.509 -5.298 9.403 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C 0.003 3.997 3 C -0.185 4.185 4 C -0.185 4.185 5 C -0.106 4.106 6 C -0.258 4.258 7 C -0.026 4.026 8 C -0.518 4.518 9 H 0.076 0.924 10 C -0.189 4.189 11 N -0.488 5.488 12 Si 0.802 3.198 13 H -0.195 1.195 14 H -0.197 1.197 15 H -0.188 1.188 16 C -0.314 4.314 17 N -0.154 5.154 18 H 0.240 0.760 19 H 0.072 0.928 20 H 0.103 0.897 21 H 0.073 0.927 22 H 0.056 0.944 23 H 0.101 0.899 24 H 0.064 0.936 25 H 0.064 0.936 26 H 0.101 0.899 27 H 0.055 0.945 28 H 0.145 0.855 29 H 0.081 0.919 30 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges -7.319 2.559 -5.395 9.446 hybrid contribution 0.606 -0.502 0.732 1.075 sum -6.713 2.057 -4.663 8.428 Atomic orbital electron populations 1.21848 0.92808 1.01975 1.02934 1.19107 0.96173 0.94406 0.90056 1.21777 1.00460 0.94428 1.01829 1.21788 1.00402 0.99770 0.96557 1.20370 0.90719 1.04327 0.95180 1.22149 0.94701 1.08716 1.00222 1.19030 0.91661 0.96854 0.95037 1.19008 0.91245 1.37692 1.03879 0.92438 1.26529 1.02657 0.93959 0.95726 1.69951 1.23904 1.34264 1.20722 0.85235 0.77106 0.78440 0.78982 1.19467 1.19686 1.18816 1.21665 0.91214 1.18050 1.00443 1.40802 1.07636 1.46365 1.20592 0.75984 0.92768 0.89709 0.92657 0.94383 0.89867 0.93637 0.93613 0.89860 0.94467 0.85546 0.91895 0.83853 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.50 7.50 71.98 0.54 -2.96 16 2 C 0.00 0.12 0.92 -52.93 -0.05 0.07 16 3 C -0.13 -4.05 8.29 71.98 0.60 -3.46 16 4 C -0.13 -4.03 8.38 71.98 0.60 -3.42 16 5 C 0.01 0.28 5.55 40.91 0.23 0.51 16 6 C -0.23 -12.78 9.05 23.67 0.21 -12.57 16 7 C -0.02 -1.13 6.09 -19.98 -0.12 -1.25 16 8 C -0.48 -29.32 9.40 23.38 0.22 -29.10 16 9 H 0.06 3.37 7.85 -2.91 -0.02 3.35 16 10 C 0.02 1.10 5.48 85.16 0.47 1.56 16 11 N -0.86 -49.96 10.47 21.79 0.23 -49.73 16 12 Si 0.98 43.44 29.56 68.60 2.03 45.47 16 13 H -0.27 -11.55 7.11 99.48 0.71 -10.84 16 14 H -0.27 -11.47 7.11 99.48 0.71 -10.76 16 15 H -0.26 -11.39 7.11 99.48 0.71 -10.68 16 16 C -0.19 -9.53 12.01 84.46 1.01 -8.52 16 17 N -0.55 -23.89 5.67 -180.64 -1.03 -24.91 16 18 H 0.40 13.82 7.82 -92.71 -0.72 13.10 16 19 H 0.05 1.35 8.14 -2.39 -0.02 1.33 16 20 H 0.08 1.66 8.14 -2.38 -0.02 1.64 16 21 H 0.05 1.35 7.86 -2.38 -0.02 1.33 16 22 H 0.04 1.39 7.84 -2.38 -0.02 1.37 16 23 H 0.08 2.01 8.14 -2.38 -0.02 1.99 16 24 H 0.04 1.47 8.14 -2.39 -0.02 1.45 16 25 H 0.04 1.45 8.14 -2.39 -0.02 1.43 16 26 H 0.08 1.99 8.14 -2.39 -0.02 1.97 16 27 H 0.04 1.35 8.05 -2.39 -0.02 1.33 16 28 H 0.13 7.54 6.02 -2.91 -0.02 7.52 16 29 H 0.27 14.49 8.30 -92.71 -0.77 13.72 16 30 H 0.14 6.68 8.06 -2.91 -0.02 6.66 16 Total: -1.00 -67.72 250.37 5.33 -62.39 By element: Atomic # 1 Polarization: 25.52 SS G_CDS: 0.39 Total: 25.91 kcal Atomic # 6 Polarization: -62.84 SS G_CDS: 3.71 Total: -59.13 kcal Atomic # 7 Polarization: -73.84 SS G_CDS: -0.80 Total: -74.64 kcal Atomic # 14 Polarization: 43.44 SS G_CDS: 2.03 Total: 45.47 kcal Total: -67.72 5.33 -62.39 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261130652.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.894 kcal (2) G-P(sol) polarization free energy of solvation -67.723 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.829 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.333 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.390 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.505 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds