Wall clock time and date at job start Mon Mar 30 2020 01:58:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53003 * 109.47446 * 2 1 4 4 C 1.50704 * 109.47335 * 119.99732 * 2 1 3 5 5 N 1.32453 * 119.91289 * 300.00214 * 4 2 1 6 6 C 1.32413 * 120.35161 * 179.97438 * 5 4 2 7 7 N 1.31901 * 120.17691 * 0.02562 * 6 5 4 8 8 C 1.33824 * 119.81796 * 359.97438 * 7 6 5 9 9 C 1.41803 * 120.16737 * 180.02562 * 8 7 6 10 10 H 1.07994 * 119.99655 * 173.77968 * 9 8 7 11 11 C 1.40107 * 120.00260 * 353.77478 * 9 8 7 12 12 N 1.30648 * 119.99829 * 6.25527 * 11 9 8 13 13 Si 1.86790 * 120.00046 * 186.25621 * 11 9 8 14 14 H 1.48505 * 109.47337 * 94.98815 * 13 11 9 15 15 H 1.48502 * 109.47271 * 214.98497 * 13 11 9 16 16 H 1.48501 * 109.47295 * 334.98682 * 13 11 9 17 17 N 1.31870 * 119.91224 * 119.72132 * 4 2 1 18 18 H 1.08997 * 109.46916 * 59.99842 * 1 2 3 19 19 H 1.08999 * 109.47072 * 300.00385 * 1 2 3 20 20 H 1.08992 * 109.47230 * 180.02562 * 1 2 3 21 21 H 1.08999 * 109.47524 * 239.99900 * 2 1 3 22 22 H 1.08999 * 109.47300 * 59.99754 * 3 2 1 23 23 H 1.08997 * 109.47261 * 179.97438 * 3 2 1 24 24 H 1.09007 * 109.46465 * 299.99782 * 3 2 1 25 25 H 1.08005 * 119.91562 * 180.02562 * 6 5 4 26 26 H 0.97006 * 119.99996 * 179.97438 * 12 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0324 -0.7104 1.2305 5 7 1.7113 -0.2563 2.4327 6 6 2.1475 -0.8740 3.5196 7 7 2.9066 -1.9474 3.4128 8 6 3.2352 -2.4121 2.2016 9 6 4.0504 -3.5658 2.0781 10 1 4.2314 -3.9973 1.1048 11 6 4.6211 -4.1458 3.2187 12 7 4.3056 -3.7000 4.4055 13 14 5.8329 -5.5563 3.0424 14 1 7.2187 -5.0227 3.0539 15 1 5.6579 -6.5035 4.1726 16 1 5.5857 -6.2641 1.7605 17 7 2.7859 -1.7856 1.1075 18 1 -0.3633 0.5138 -0.8900 19 1 -0.3633 0.5139 0.8899 20 1 -0.3633 -1.0276 0.0005 21 1 1.8934 -0.5138 -0.8899 22 1 1.6767 1.9564 0.8899 23 1 3.1300 1.4425 0.0005 24 1 1.6767 1.9563 -0.8901 25 1 1.8811 -0.4979 4.4964 26 1 4.7004 -4.1018 5.1953 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261139710.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:58:51 Heat of formation + Delta-G solvation = 20.087876 kcal Electronic energy + Delta-G solvation = -11688.587330 eV Core-core repulsion = 9573.191624 eV Total energy + Delta-G solvation = -2115.395706 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 193.091 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -41.56768 -36.95769 -35.64898 -33.82218 -32.61242 -28.99387 -27.98985 -25.41022 -24.57045 -21.83294 -19.58140 -18.54310 -17.42132 -16.42080 -15.74449 -15.20856 -14.95178 -14.54904 -14.24166 -13.90489 -13.41315 -13.11700 -12.91772 -12.76521 -12.31413 -12.17622 -11.93893 -11.78940 -11.66436 -11.11677 -10.58261 -9.84483 -9.64806 -8.56260 -7.02486 0.68634 0.80468 1.38887 1.52349 1.56479 2.16423 2.70503 3.35392 3.62449 3.77850 3.93091 4.20529 4.33658 4.43669 4.85961 4.86821 4.93048 4.99493 5.02292 5.14574 5.38408 5.42306 5.61692 5.92879 6.36556 6.40677 6.75243 6.89787 8.18402 8.30509 Molecular weight = 193.09amu Principal moments of inertia in cm(-1) A = 0.067070 B = 0.010022 C = 0.009261 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 417.375901 B = 2793.157030 C = 3022.638674 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.025 4.025 3 C -0.124 4.124 4 C 0.343 3.657 5 N -0.654 5.654 6 C 0.304 3.696 7 N -0.578 5.578 8 C 0.369 3.631 9 C -0.419 4.419 10 H 0.096 0.904 11 C 0.023 3.977 12 N -0.737 5.737 13 Si 1.008 2.992 14 H -0.259 1.259 15 H -0.259 1.259 16 H -0.253 1.253 17 N -0.653 5.653 18 H 0.094 0.906 19 H 0.057 0.943 20 H 0.034 0.966 21 H 0.084 0.916 22 H 0.057 0.943 23 H 0.034 0.966 24 H 0.094 0.906 25 H 0.197 0.803 26 H 0.290 0.710 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.461 2.599 -3.805 4.834 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C -0.046 4.046 3 C -0.182 4.182 4 C 0.065 3.935 5 N -0.385 5.385 6 C 0.005 3.995 7 N -0.303 5.303 8 C 0.129 3.871 9 C -0.458 4.458 10 H 0.114 0.886 11 C -0.202 4.202 12 N -0.359 5.359 13 Si 0.825 3.175 14 H -0.184 1.184 15 H -0.183 1.183 16 H -0.177 1.177 17 N -0.381 5.381 18 H 0.113 0.887 19 H 0.076 0.924 20 H 0.053 0.947 21 H 0.102 0.898 22 H 0.076 0.924 23 H 0.053 0.947 24 H 0.113 0.887 25 H 0.214 0.786 26 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -1.409 2.513 -3.538 4.563 hybrid contribution 0.446 -0.523 0.405 0.798 sum -0.963 1.990 -3.133 3.835 Atomic orbital electron populations 1.21642 0.92036 1.01122 1.03356 1.20008 0.97393 0.96144 0.91019 1.21646 0.99714 0.93455 1.03354 1.23731 0.87381 0.88213 0.94224 1.68679 1.33039 1.37334 0.99415 1.25449 0.88082 0.87940 0.98011 1.69902 1.18341 1.14938 1.27144 1.20610 0.90123 0.93132 0.83219 1.19859 1.23235 1.06476 0.96218 0.88624 1.27215 0.98573 1.00935 0.93486 1.70147 1.31709 1.34388 0.99645 0.84828 0.76947 0.75787 0.79909 1.18384 1.18252 1.17672 1.69177 1.20472 1.13545 1.34936 0.88682 0.92392 0.94697 0.89752 0.92394 0.94703 0.88680 0.78615 0.89868 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -3.78 9.10 71.98 0.65 -3.12 15 2 C -0.03 -0.92 3.28 -11.54 -0.04 -0.96 15 3 C -0.12 -3.78 9.10 71.98 0.65 -3.13 15 4 C 0.34 16.78 6.36 138.53 0.88 17.66 15 5 N -0.65 -31.92 10.00 -192.27 -1.92 -33.84 15 6 C 0.30 15.44 12.40 180.67 2.24 17.68 15 7 N -0.58 -33.39 8.09 -198.21 -1.60 -35.00 15 8 C 0.37 21.91 7.40 134.97 1.00 22.91 15 9 C -0.42 -23.57 9.41 23.61 0.22 -23.35 15 10 H 0.10 5.15 7.86 -2.91 -0.02 5.13 15 11 C 0.02 1.16 5.49 85.32 0.47 1.63 15 12 N -0.74 -38.70 11.52 21.85 0.25 -38.45 15 13 Si 1.01 36.83 29.56 68.60 2.03 38.86 15 14 H -0.26 -9.12 7.11 99.48 0.71 -8.41 15 15 H -0.26 -8.76 7.11 99.48 0.71 -8.06 15 16 H -0.25 -8.99 7.11 99.48 0.71 -8.28 15 17 N -0.65 -36.61 10.37 -186.05 -1.93 -38.54 15 18 H 0.09 2.13 8.14 -2.39 -0.02 2.11 15 19 H 0.06 1.84 8.05 -2.39 -0.02 1.82 15 20 H 0.03 1.14 8.14 -2.39 -0.02 1.12 15 21 H 0.08 3.04 8.11 -2.39 -0.02 3.02 15 22 H 0.06 1.84 8.05 -2.39 -0.02 1.82 15 23 H 0.03 1.14 8.14 -2.39 -0.02 1.12 15 24 H 0.09 2.13 8.14 -2.38 -0.02 2.11 15 25 H 0.20 8.31 8.06 -2.91 -0.02 8.29 15 26 H 0.29 13.40 8.29 -92.70 -0.77 12.63 15 Total: -1.00 -67.30 234.38 4.08 -63.22 By element: Atomic # 1 Polarization: 13.25 SS G_CDS: 1.17 Total: 14.42 kcal Atomic # 6 Polarization: 23.24 SS G_CDS: 6.08 Total: 29.33 kcal Atomic # 7 Polarization: -140.62 SS G_CDS: -5.20 Total: -145.82 kcal Atomic # 14 Polarization: 36.83 SS G_CDS: 2.03 Total: 38.86 kcal Total: -67.30 4.08 -63.22 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261139710.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 83.306 kcal (2) G-P(sol) polarization free energy of solvation -67.295 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.011 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.077 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.219 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.088 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds