Wall clock time and date at job start Mon Mar 30 2020 02:41:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30801 * 1 3 3 Si 1.86802 * 120.00409 * 2 1 4 4 H 1.48502 * 109.46959 * 270.00503 * 3 2 1 5 5 H 1.48495 * 109.46672 * 29.99886 * 3 2 1 6 6 H 1.48490 * 109.47346 * 150.00013 * 3 2 1 7 7 C 1.40163 * 119.99794 * 180.02562 * 2 1 3 8 8 H 1.08004 * 120.00012 * 179.97438 * 7 2 1 9 9 C 1.39744 * 119.99888 * 359.97438 * 7 2 1 10 10 C 1.39862 * 126.16126 * 180.02562 * 9 7 2 11 11 C 1.38703 * 106.25715 * 179.97438 * 10 9 7 12 12 C 1.36480 * 107.71965 * 0.05799 * 11 10 9 13 13 O 1.33564 * 108.98031 * 359.89438 * 12 11 10 14 14 C 1.51088 * 122.59714 * 179.64437 * 12 11 10 15 15 O 1.43274 * 108.02764 * 344.99446 * 14 12 11 16 16 C 1.43001 * 114.57287 * 50.94884 * 15 14 12 17 17 C 1.50809 * 129.14850 * 180.15949 * 11 10 9 18 18 H 0.97000 * 119.99768 * 0.02562 * 1 2 3 19 19 H 1.07999 * 126.87395 * 359.96444 * 10 9 7 20 20 H 1.09003 * 109.75986 * 104.54587 * 14 12 11 21 21 H 1.08994 * 109.75686 * 225.30447 * 14 12 11 22 22 H 1.09000 * 109.45498 * 168.95724 * 16 15 14 23 23 H 1.09000 * 109.43243 * 49.00683 * 16 15 14 24 24 H 1.09002 * 109.81475 * 283.90439 * 17 11 10 25 25 H 1.09002 * 109.81926 * 44.74831 * 17 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3080 0.0000 0.0000 3 14 2.2421 1.6177 0.0000 4 1 2.4895 2.0464 -1.4001 5 1 1.4396 2.6526 0.7000 6 1 3.5396 1.4401 0.7000 7 6 2.0088 -1.2139 -0.0005 8 1 3.0888 -1.2139 -0.0010 9 6 1.3100 -2.4241 -0.0005 10 6 1.8752 -3.7034 -0.0005 11 6 0.8141 -4.5967 0.0001 12 6 -0.3409 -3.8696 -0.0009 13 8 -0.0358 -2.5693 0.0002 14 6 -1.7078 -4.5133 -0.0085 15 8 -1.5471 -5.8912 -0.3666 16 6 -0.5630 -6.5933 0.3973 17 6 0.8390 -6.1045 0.0036 18 1 -0.4850 0.8401 -0.0004 19 1 2.9273 -3.9470 -0.0011 20 1 -2.1545 -4.4415 0.9832 21 1 -2.3459 -4.0144 -0.7379 22 1 -0.6439 -7.6620 0.1989 23 1 -0.7274 -6.4075 1.4587 24 1 1.0928 -6.4722 -0.9907 25 1 1.5722 -6.4604 0.7273 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261141322.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:41:08 Heat of formation + Delta-G solvation = -51.752258 kcal Electronic energy + Delta-G solvation = -11980.812492 eV Core-core repulsion = 9732.290150 eV Total energy + Delta-G solvation = -2248.522342 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 194.073 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -40.54687 -37.67549 -33.66281 -32.49948 -29.67502 -29.39467 -26.52168 -22.83194 -22.81482 -19.78743 -18.74272 -16.82536 -15.94565 -15.21813 -15.09009 -14.92131 -13.84927 -13.64753 -12.73868 -12.67272 -12.18343 -11.67490 -11.39038 -11.30394 -11.05768 -10.77427 -10.41818 -10.25645 -9.97435 -9.48335 -9.09116 -8.00337 -7.06318 -6.86609 -4.41100 2.87822 3.02173 3.06906 3.43343 3.85309 3.99986 4.30800 4.74066 5.20151 5.53836 5.59910 5.77702 6.01988 6.14611 6.19692 6.33467 6.52543 6.53550 7.00258 7.17022 7.43306 7.53712 7.65927 8.02067 8.19261 8.58096 8.71085 9.26272 10.13056 Molecular weight = 194.07amu Principal moments of inertia in cm(-1) A = 0.082369 B = 0.010121 C = 0.009131 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 339.852097 B = 2765.749594 C = 3065.768774 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.778 5.778 2 C 0.066 3.934 3 Si 0.924 3.076 4 H -0.267 1.267 5 H -0.275 1.275 6 H -0.259 1.259 7 C -0.444 4.444 8 H 0.103 0.897 9 C 0.210 3.790 10 C -0.384 4.384 11 C -0.129 4.129 12 C -0.211 4.211 13 O -0.144 6.144 14 C 0.173 3.827 15 O -0.382 6.382 16 C 0.065 3.935 17 C -0.079 4.079 18 H 0.284 0.716 19 H 0.113 0.887 20 H 0.051 0.949 21 H 0.093 0.907 22 H 0.087 0.913 23 H 0.048 0.952 24 H 0.067 0.933 25 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.643 -4.134 1.050 4.314 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.404 5.404 2 C -0.154 4.154 3 Si 0.747 3.253 4 H -0.192 1.192 5 H -0.200 1.200 6 H -0.183 1.183 7 C -0.474 4.474 8 H 0.121 0.879 9 C 0.157 3.843 10 C -0.404 4.404 11 C -0.131 4.131 12 C -0.260 4.260 13 O -0.040 6.040 14 C 0.097 3.903 15 O -0.300 6.300 16 C -0.012 4.012 17 C -0.117 4.117 18 H 0.095 0.905 19 H 0.131 0.869 20 H 0.068 0.932 21 H 0.111 0.889 22 H 0.105 0.895 23 H 0.067 0.933 24 H 0.085 0.915 25 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -1.195 -3.897 0.911 4.177 hybrid contribution 0.771 0.813 0.192 1.137 sum -0.424 -3.085 1.103 3.303 Atomic orbital electron populations 1.69774 1.07526 1.29706 1.33418 1.26139 0.95036 1.01871 0.92372 0.86047 0.80175 0.79646 0.79386 1.19164 1.19994 1.18322 1.18734 0.94522 0.87510 1.46633 0.87888 1.19739 0.78676 0.93890 0.92021 1.20827 0.96994 0.91539 1.31077 1.19408 0.93505 0.93770 1.06392 1.22134 0.95954 0.83525 1.24343 1.84204 1.24132 1.22606 1.73089 1.20421 0.90665 0.79679 0.99557 1.87885 1.58130 1.22043 1.61976 1.22572 0.88226 0.95498 0.94882 1.20650 0.96801 0.93025 1.01215 0.90495 0.86923 0.93156 0.88943 0.89455 0.93348 0.91483 0.91288 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.78 -21.05 12.00 55.56 0.67 -20.38 15 2 C 0.07 1.71 5.50 -17.27 -0.09 1.61 15 3 Si 0.92 18.69 29.56 -169.99 -5.03 13.67 15 4 H -0.27 -5.29 7.11 56.52 0.40 -4.89 15 5 H -0.27 -5.41 7.11 56.52 0.40 -5.01 15 6 H -0.26 -5.11 7.11 56.52 0.40 -4.71 15 7 C -0.44 -12.22 9.32 -38.30 -0.36 -12.57 15 8 H 0.10 2.63 7.85 -52.48 -0.41 2.22 15 9 C 0.21 6.08 6.80 -38.41 -0.26 5.82 15 10 C -0.38 -10.36 10.93 -38.80 -0.42 -10.78 15 11 C -0.13 -3.24 6.01 -105.03 -0.63 -3.87 15 12 C -0.21 -5.46 7.36 -34.75 -0.26 -5.72 15 13 O -0.14 -4.21 8.95 4.63 0.04 -4.17 15 14 C 0.17 3.64 7.26 36.20 0.26 3.90 15 15 O -0.38 -7.57 10.72 -35.23 -0.38 -7.94 15 16 C 0.07 1.12 6.80 37.47 0.25 1.37 15 17 C -0.08 -1.55 6.55 -27.52 -0.18 -1.73 15 18 H 0.28 6.88 8.30 -40.82 -0.34 6.54 15 19 H 0.11 2.83 8.06 -52.49 -0.42 2.41 15 20 H 0.05 0.97 8.14 -51.93 -0.42 0.54 15 21 H 0.09 1.83 8.14 -51.93 -0.42 1.40 15 22 H 0.09 1.19 8.14 -51.93 -0.42 0.77 15 23 H 0.05 0.80 8.09 -51.93 -0.42 0.38 15 24 H 0.07 1.25 8.14 -51.93 -0.42 0.83 15 25 H 0.07 1.20 8.14 -51.93 -0.42 0.78 15 LS Contribution 222.10 15.07 3.35 3.35 Total: -1.00 -30.64 222.10 -5.54 -36.18 By element: Atomic # 1 Polarization: 3.77 SS G_CDS: -2.50 Total: 1.26 kcal Atomic # 6 Polarization: -20.27 SS G_CDS: -1.69 Total: -21.96 kcal Atomic # 7 Polarization: -21.05 SS G_CDS: 0.67 Total: -20.38 kcal Atomic # 8 Polarization: -11.78 SS G_CDS: -0.34 Total: -12.12 kcal Atomic # 14 Polarization: 18.69 SS G_CDS: -5.03 Total: 13.67 kcal Total LS contribution 3.35 Total: 3.35 kcal Total: -30.64 -5.54 -36.18 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261141322.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.572 kcal (2) G-P(sol) polarization free energy of solvation -30.643 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.214 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.538 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.181 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.752 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds