Wall clock time and date at job start Mon Mar 30 2020 02:41:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30801 * 1 3 3 Si 1.86802 * 120.00409 * 2 1 4 4 H 1.48502 * 109.46959 * 270.00503 * 3 2 1 5 5 H 1.48495 * 109.46672 * 29.99886 * 3 2 1 6 6 H 1.48490 * 109.47346 * 150.00013 * 3 2 1 7 7 C 1.40163 * 119.99794 * 180.02562 * 2 1 3 8 8 H 1.08004 * 120.00012 * 179.97438 * 7 2 1 9 9 C 1.39744 * 119.99888 * 359.97438 * 7 2 1 10 10 C 1.39862 * 126.16126 * 180.02562 * 9 7 2 11 11 C 1.38703 * 106.25715 * 179.97438 * 10 9 7 12 12 C 1.36480 * 107.71965 * 0.05799 * 11 10 9 13 13 O 1.33564 * 108.98031 * 359.89438 * 12 11 10 14 14 C 1.51088 * 122.59714 * 179.64437 * 12 11 10 15 15 O 1.43274 * 108.02764 * 344.99446 * 14 12 11 16 16 C 1.43001 * 114.57287 * 50.94884 * 15 14 12 17 17 C 1.50809 * 129.14850 * 180.15949 * 11 10 9 18 18 H 0.97000 * 119.99768 * 0.02562 * 1 2 3 19 19 H 1.07999 * 126.87395 * 359.96444 * 10 9 7 20 20 H 1.09003 * 109.75986 * 104.54587 * 14 12 11 21 21 H 1.08994 * 109.75686 * 225.30447 * 14 12 11 22 22 H 1.09000 * 109.45498 * 168.95724 * 16 15 14 23 23 H 1.09000 * 109.43243 * 49.00683 * 16 15 14 24 24 H 1.09002 * 109.81475 * 283.90439 * 17 11 10 25 25 H 1.09002 * 109.81926 * 44.74831 * 17 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3080 0.0000 0.0000 3 14 2.2421 1.6177 0.0000 4 1 2.4895 2.0464 -1.4001 5 1 1.4396 2.6526 0.7000 6 1 3.5396 1.4401 0.7000 7 6 2.0088 -1.2139 -0.0005 8 1 3.0888 -1.2139 -0.0010 9 6 1.3100 -2.4241 -0.0005 10 6 1.8752 -3.7034 -0.0005 11 6 0.8141 -4.5967 0.0001 12 6 -0.3409 -3.8696 -0.0009 13 8 -0.0358 -2.5693 0.0002 14 6 -1.7078 -4.5133 -0.0085 15 8 -1.5471 -5.8912 -0.3666 16 6 -0.5630 -6.5933 0.3973 17 6 0.8390 -6.1045 0.0036 18 1 -0.4850 0.8401 -0.0004 19 1 2.9273 -3.9470 -0.0011 20 1 -2.1545 -4.4415 0.9832 21 1 -2.3459 -4.0144 -0.7379 22 1 -0.6439 -7.6620 0.1989 23 1 -0.7274 -6.4075 1.4587 24 1 1.0928 -6.4722 -0.9907 25 1 1.5722 -6.4604 0.7273 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261141322.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:41:08 Heat of formation + Delta-G solvation = -72.084907 kcal Electronic energy + Delta-G solvation = -11981.694182 eV Core-core repulsion = 9732.290150 eV Total energy + Delta-G solvation = -2249.404031 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 194.073 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -42.54473 -39.27327 -35.64654 -34.29602 -31.63427 -31.08297 -28.41136 -24.68407 -24.38527 -21.81199 -20.66957 -18.73298 -17.67269 -16.90057 -16.82045 -16.69838 -15.72135 -15.37313 -14.41908 -14.27066 -13.95268 -13.38764 -13.22101 -13.02637 -12.90021 -12.58041 -12.07708 -11.91779 -11.65217 -11.34549 -10.68794 -10.01885 -9.08940 -8.80583 -6.48225 1.13392 1.36155 1.53567 1.59479 2.05492 2.15248 2.70219 2.95438 3.14560 4.09596 4.10156 4.38886 4.43073 4.48588 4.56243 4.74844 4.87855 5.02453 5.04886 5.21480 5.46493 5.58228 5.93192 6.09854 6.28448 6.58114 6.65229 7.19923 8.22227 Molecular weight = 194.07amu Principal moments of inertia in cm(-1) A = 0.082369 B = 0.010121 C = 0.009131 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 339.852097 B = 2765.749594 C = 3065.768774 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.817 5.817 2 C 0.020 3.980 3 Si 1.009 2.991 4 H -0.257 1.257 5 H -0.263 1.263 6 H -0.250 1.250 7 C -0.477 4.477 8 H 0.112 0.888 9 C 0.169 3.831 10 C -0.410 4.410 11 C -0.140 4.140 12 C -0.237 4.237 13 O -0.173 6.173 14 C 0.177 3.823 15 O -0.385 6.385 16 C 0.062 3.938 17 C -0.079 4.079 18 H 0.295 0.705 19 H 0.120 0.880 20 H 0.070 0.930 21 H 0.100 0.900 22 H 0.133 0.867 23 H 0.056 0.944 24 H 0.076 0.924 25 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.503 -4.432 1.260 4.635 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.443 5.443 2 C -0.197 4.197 3 Si 0.827 3.173 4 H -0.182 1.182 5 H -0.187 1.187 6 H -0.173 1.173 7 C -0.506 4.506 8 H 0.129 0.871 9 C 0.117 3.883 10 C -0.430 4.430 11 C -0.141 4.141 12 C -0.285 4.285 13 O -0.071 6.071 14 C 0.101 3.899 15 O -0.304 6.304 16 C -0.014 4.014 17 C -0.116 4.116 18 H 0.105 0.895 19 H 0.138 0.862 20 H 0.088 0.912 21 H 0.118 0.882 22 H 0.151 0.849 23 H 0.075 0.925 24 H 0.094 0.906 25 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -1.062 -4.232 1.122 4.505 hybrid contribution 0.714 0.823 0.128 1.097 sum -0.348 -3.409 1.250 3.648 Atomic orbital electron populations 1.69851 1.09454 1.31501 1.33512 1.27260 0.95885 1.05699 0.90855 0.84800 0.78738 0.73847 0.79897 1.18173 1.18723 1.17346 1.19194 0.95234 0.88425 1.47788 0.87059 1.20359 0.79135 0.95399 0.93426 1.21142 0.98011 0.91821 1.32067 1.20032 0.92389 0.96791 1.04891 1.23228 0.98700 0.82729 1.23862 1.84152 1.24440 1.24689 1.73842 1.20550 0.88274 0.80194 1.00928 1.87885 1.58774 1.21020 1.62725 1.22859 0.86020 0.97411 0.95105 1.20817 0.99240 0.89063 1.02523 0.89475 0.86163 0.91194 0.88209 0.84928 0.92533 0.90606 0.89163 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -44.98 12.00 21.87 0.26 -44.72 15 2 C 0.02 1.03 5.50 85.31 0.47 1.50 15 3 Si 1.01 37.95 29.56 68.60 2.03 39.98 15 4 H -0.26 -9.25 7.11 99.48 0.71 -8.54 15 5 H -0.26 -9.30 7.11 99.48 0.71 -8.60 15 6 H -0.25 -8.95 7.11 99.48 0.71 -8.24 15 7 C -0.48 -26.98 9.32 23.10 0.22 -26.76 15 8 H 0.11 5.82 7.85 -2.91 -0.02 5.80 15 9 C 0.17 10.17 6.80 23.03 0.16 10.32 15 10 C -0.41 -22.68 10.93 22.77 0.25 -22.43 15 11 C -0.14 -6.99 6.01 -20.13 -0.12 -7.11 15 12 C -0.24 -12.41 7.36 25.40 0.19 -12.22 15 13 O -0.17 -10.51 8.95 -6.33 -0.06 -10.57 15 14 C 0.18 7.27 7.26 71.36 0.52 7.79 15 15 O -0.39 -14.34 10.72 -148.98 -1.60 -15.94 15 16 C 0.06 1.93 6.80 72.18 0.49 2.42 15 17 C -0.08 -2.91 6.55 30.09 0.20 -2.71 15 18 H 0.29 14.38 8.30 -92.71 -0.77 13.61 15 19 H 0.12 6.20 8.06 -2.91 -0.02 6.18 15 20 H 0.07 2.59 8.14 -2.39 -0.02 2.57 15 21 H 0.10 3.89 8.14 -2.39 -0.02 3.87 15 22 H 0.13 2.96 8.14 -2.39 -0.02 2.95 15 23 H 0.06 1.68 8.09 -2.39 -0.02 1.66 15 24 H 0.08 2.65 8.14 -2.39 -0.02 2.63 15 25 H 0.09 2.91 8.14 -2.39 -0.02 2.89 15 Total: -1.00 -67.88 222.10 4.19 -63.69 By element: Atomic # 1 Polarization: 15.58 SS G_CDS: 1.19 Total: 16.77 kcal Atomic # 6 Polarization: -51.57 SS G_CDS: 2.36 Total: -49.21 kcal Atomic # 7 Polarization: -44.98 SS G_CDS: 0.26 Total: -44.72 kcal Atomic # 8 Polarization: -24.85 SS G_CDS: -1.65 Total: -26.51 kcal Atomic # 14 Polarization: 37.95 SS G_CDS: 2.03 Total: 39.98 kcal Total: -67.88 4.19 -63.69 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261141322.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.396 kcal (2) G-P(sol) polarization free energy of solvation -67.877 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.273 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.188 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.689 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.085 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds