Wall clock time and date at job start Mon Mar 30 2020 02:48:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 O 1.33857 * 126.05522 * 2 1 4 4 C 1.34443 * 111.21466 * 180.02562 * 3 2 1 5 5 C 1.34302 * 109.21301 * 359.97438 * 4 3 2 6 6 C 1.39056 * 126.05058 * 180.02562 * 2 1 3 7 7 C 1.41377 * 127.40869 * 0.03455 * 6 2 1 8 8 H 1.07998 * 120.00416 * 339.67012 * 7 6 2 9 9 C 1.39702 * 119.99882 * 159.67614 * 7 6 2 10 10 N 1.31028 * 119.99702 * 349.11647 * 9 7 6 11 11 Si 1.86796 * 119.99828 * 169.11472 * 9 7 6 12 12 H 1.48500 * 109.47498 * 60.00318 * 11 9 7 13 13 H 1.48504 * 109.46851 * 180.02562 * 11 9 7 14 14 H 1.48502 * 109.47228 * 299.99762 * 11 9 7 15 15 C 1.50769 * 108.30985 * 180.02562 * 5 4 3 16 16 O 1.44047 * 105.74634 * 17.44195 * 15 5 4 17 17 C 1.43955 * 104.20498 * 332.29445 * 16 15 5 18 18 H 1.09003 * 109.46867 * 264.81265 * 1 2 3 19 19 H 1.09005 * 109.46995 * 24.80809 * 1 2 3 20 20 H 1.09000 * 109.47613 * 144.81375 * 1 2 3 21 21 H 0.97001 * 119.99256 * 176.72629 * 10 9 7 22 22 H 1.09006 * 110.18849 * 136.49132 * 15 5 4 23 23 H 1.08995 * 110.19618 * 258.26795 * 15 5 4 24 24 H 1.08996 * 110.16268 * 268.66836 * 17 16 15 25 25 H 1.08997 * 110.16548 * 146.89546 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.2948 1.0822 0.0000 4 6 3.5944 0.7378 -0.0006 5 6 3.6968 -0.6013 -0.0004 6 6 2.3253 -1.1243 -0.0005 7 6 1.9228 -2.4795 -0.0018 8 1 0.9282 -2.7478 0.3224 9 6 2.8118 -3.4718 -0.4224 10 7 3.9331 -3.1392 -1.0130 11 14 2.4018 -5.2726 -0.1426 12 1 1.1349 -5.6063 -0.8417 13 1 3.4996 -6.1187 -0.6757 14 1 2.2455 -5.5244 1.3126 15 6 5.1601 -0.9644 -0.0004 16 8 5.8581 0.2252 0.4150 17 6 4.9990 1.3025 -0.0017 18 1 -0.3633 -0.0929 1.0235 19 1 -0.3633 0.9329 -0.4312 20 1 -0.3634 -0.8399 -0.5922 21 1 4.5719 -3.8252 -1.2623 22 1 5.3465 -1.7751 0.7041 23 1 5.4752 -1.2571 -1.0019 24 1 5.2702 1.6330 -1.0043 25 1 5.0704 2.1331 0.7004 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261151136.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:48:10 Heat of formation + Delta-G solvation = -38.516348 kcal Electronic energy + Delta-G solvation = -12166.721654 eV Core-core repulsion = 9918.773265 eV Total energy + Delta-G solvation = -2247.948389 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 194.073 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -42.78598 -39.61352 -35.84038 -32.93864 -32.41161 -29.43595 -29.07163 -26.36274 -23.84629 -21.89039 -20.15676 -18.75176 -17.42906 -17.14829 -16.53517 -16.21603 -16.01975 -15.01602 -14.53503 -13.97508 -13.73297 -13.57678 -13.34583 -13.14808 -12.91423 -12.49233 -12.35242 -11.85518 -11.66420 -11.18746 -11.05132 -9.75832 -8.80115 -8.55254 -6.27570 1.06570 1.37653 1.40523 1.51055 1.90864 2.02862 2.25441 3.04707 3.29779 3.88561 4.21857 4.42081 4.43031 4.67567 4.73009 4.89030 4.91668 4.96915 5.15056 5.18087 5.37078 5.52087 5.83579 5.91208 6.33785 6.76835 6.87328 7.06020 8.47015 Molecular weight = 194.07amu Principal moments of inertia in cm(-1) A = 0.034974 B = 0.016425 C = 0.011527 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 800.401336 B = 1704.269916 C = 2428.540202 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.018 4.018 2 C -0.223 4.223 3 O -0.179 6.179 4 C -0.129 4.129 5 C -0.241 4.241 6 C 0.027 3.973 7 C -0.485 4.485 8 H 0.077 0.923 9 C 0.033 3.967 10 N -0.840 5.840 11 Si 0.985 3.015 12 H -0.260 1.260 13 H -0.270 1.270 14 H -0.265 1.265 15 C 0.156 3.844 16 O -0.379 6.379 17 C 0.162 3.838 18 H 0.063 0.937 19 H 0.071 0.929 20 H 0.071 0.929 21 H 0.284 0.716 22 H 0.067 0.933 23 H 0.072 0.928 24 H 0.099 0.901 25 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.047 1.989 0.569 2.070 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 C -0.270 4.270 3 O -0.080 6.080 4 C -0.180 4.180 5 C -0.244 4.244 6 C 0.025 3.975 7 C -0.516 4.516 8 H 0.095 0.905 9 C -0.179 4.179 10 N -0.469 5.469 11 Si 0.806 3.194 12 H -0.185 1.185 13 H -0.194 1.194 14 H -0.190 1.190 15 C 0.081 3.919 16 O -0.298 6.298 17 C 0.086 3.914 18 H 0.082 0.918 19 H 0.090 0.910 20 H 0.090 0.910 21 H 0.094 0.906 22 H 0.086 0.914 23 H 0.089 0.911 24 H 0.117 0.883 25 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges 0.336 2.190 0.529 2.278 hybrid contribution -0.259 -1.038 -0.080 1.073 sum 0.076 1.152 0.449 1.239 Atomic orbital electron populations 1.19688 0.83688 1.02302 1.01748 1.23201 0.93857 0.82247 1.27739 1.83089 1.13515 1.35827 1.75543 1.23868 0.86818 0.96622 1.10680 1.22715 0.96404 0.94493 1.10741 1.18749 0.88491 0.94037 0.96272 1.18977 1.00821 0.90255 1.41555 0.90477 1.26615 0.94187 1.05474 0.91606 1.69887 1.09156 1.37282 1.30544 0.85213 0.78948 0.75857 0.79372 1.18469 1.19412 1.18987 1.20656 0.86230 0.85571 0.99463 1.89098 1.42219 1.16320 1.82173 1.21178 0.77800 0.89820 1.02618 0.91819 0.91004 0.91046 0.90607 0.91433 0.91068 0.88343 0.86103 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.02 -0.71 10.22 71.24 0.73 0.02 15 2 C -0.22 -11.50 7.49 25.88 0.19 -11.31 15 3 O -0.18 -9.12 10.52 0.38 0.00 -9.11 15 4 C -0.13 -6.32 8.37 25.00 0.21 -6.11 15 5 C -0.24 -13.00 6.23 -18.51 -0.12 -13.12 15 6 C 0.03 1.54 5.94 -20.08 -0.12 1.42 15 7 C -0.49 -26.88 9.14 23.40 0.21 -26.67 15 8 H 0.08 4.07 7.87 -2.91 -0.02 4.04 15 9 C 0.03 1.72 5.43 85.17 0.46 2.19 15 10 N -0.84 -44.20 9.83 21.79 0.21 -43.98 15 11 Si 0.98 39.26 29.57 68.60 2.03 41.28 15 12 H -0.26 -10.01 7.11 99.48 0.71 -9.30 15 13 H -0.27 -10.19 7.11 99.48 0.71 -9.49 15 14 H -0.27 -10.41 7.11 99.48 0.71 -9.70 15 15 C 0.16 7.53 5.90 71.26 0.42 7.95 15 16 O -0.38 -16.04 11.78 -148.98 -1.75 -17.79 15 17 C 0.16 6.10 7.64 71.45 0.55 6.65 15 18 H 0.06 2.31 8.14 -2.39 -0.02 2.29 15 19 H 0.07 2.47 8.14 -2.38 -0.02 2.45 15 20 H 0.07 2.79 8.10 -2.39 -0.02 2.77 15 21 H 0.28 13.61 8.30 -92.71 -0.77 12.84 15 22 H 0.07 3.34 8.06 -2.38 -0.02 3.32 15 23 H 0.07 3.47 7.58 -2.39 -0.02 3.45 15 24 H 0.10 3.18 8.14 -2.39 -0.02 3.16 15 25 H 0.12 3.67 8.14 -2.39 -0.02 3.65 15 Total: -1.00 -63.31 221.86 4.23 -59.08 By element: Atomic # 1 Polarization: 8.31 SS G_CDS: 1.19 Total: 9.50 kcal Atomic # 6 Polarization: -41.52 SS G_CDS: 2.54 Total: -38.98 kcal Atomic # 7 Polarization: -44.20 SS G_CDS: 0.21 Total: -43.98 kcal Atomic # 8 Polarization: -25.16 SS G_CDS: -1.75 Total: -26.91 kcal Atomic # 14 Polarization: 39.26 SS G_CDS: 2.03 Total: 41.28 kcal Total: -63.31 4.23 -59.08 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261151136.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.568 kcal (2) G-P(sol) polarization free energy of solvation -63.310 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.742 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.226 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.084 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.516 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds