Wall clock time and date at job start Mon Mar 30 2020 02:03:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31854 * 1 3 3 N 1.39535 * 119.99990 * 2 1 4 4 N 1.40091 * 126.10252 * 359.69827 * 3 2 1 5 5 C 1.30865 * 108.25096 * 179.81514 * 4 3 2 6 6 C 1.39913 * 108.36563 * 0.44201 * 5 4 3 7 7 C 1.35335 * 107.97130 * 359.71286 * 6 5 4 8 8 C 1.50696 * 126.19488 * 180.02562 * 7 6 5 9 9 H 1.08994 * 109.47450 * 205.00440 * 8 7 6 10 10 N 1.46907 * 109.46854 * 325.00508 * 8 7 6 11 11 C 1.50696 * 109.47119 * 85.00113 * 8 7 6 12 12 H 1.08004 * 120.00416 * 0.02562 * 11 8 7 13 13 C 1.37881 * 120.00175 * 180.02562 * 11 8 7 14 14 N 1.31512 * 119.99567 * 0.02562 * 13 11 8 15 15 Si 1.86802 * 120.00001 * 180.02562 * 13 11 8 16 16 H 1.48495 * 109.47036 * 359.97438 * 15 13 11 17 17 H 1.48501 * 109.46969 * 120.00260 * 15 13 11 18 18 H 1.48495 * 109.47071 * 239.99815 * 15 13 11 19 19 H 1.08002 * 120.00369 * 180.02562 * 1 2 3 20 20 H 1.08005 * 119.99863 * 359.72006 * 1 2 3 21 21 H 1.07998 * 120.00179 * 180.02562 * 2 1 3 22 22 H 1.07997 * 125.81652 * 180.14855 * 5 4 3 23 23 H 1.08002 * 126.02084 * 179.75609 * 6 5 4 24 24 H 1.00896 * 111.00178 * 59.99736 * 10 8 7 25 25 H 1.00899 * 110.99487 * 183.95698 * 10 8 7 26 26 H 0.96998 * 119.99738 * 179.97438 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3185 0.0000 0.0000 3 7 2.0162 1.2084 0.0000 4 7 1.4487 2.4892 -0.0060 5 6 2.4189 3.3674 0.0002 6 6 3.6369 2.6788 0.0000 7 6 3.3667 1.3526 0.0000 8 6 4.3808 0.2379 0.0003 9 1 3.9365 -0.6576 -0.4341 10 7 5.5498 0.6392 -0.7937 11 6 4.8099 -0.0503 1.4159 12 1 4.3901 0.5168 2.2336 13 6 5.7387 -1.0379 1.6672 14 7 6.2504 -1.7280 0.6715 15 14 6.2701 -1.3956 3.4219 16 1 5.5524 -0.4867 4.3515 17 1 5.9473 -2.8053 3.7593 18 1 7.7336 -1.1787 3.5499 19 1 -0.5401 -0.9353 0.0004 20 1 -0.5400 0.9354 0.0046 21 1 1.8586 -0.9353 -0.0004 22 1 2.2998 4.4408 0.0001 23 1 4.6197 3.1266 0.0005 24 1 5.9798 1.4678 -0.4109 25 1 6.2163 -0.1152 -0.8625 26 1 6.9040 -2.4225 0.8482 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261154936.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:03:18 Heat of formation + Delta-G solvation = 74.110724 kcal Electronic energy + Delta-G solvation = -11787.226708 eV Core-core repulsion = 9674.173608 eV Total energy + Delta-G solvation = -2113.053100 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 193.091 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -42.17478 -36.76742 -35.63975 -33.54533 -31.03514 -29.87399 -28.04574 -24.65565 -23.80415 -21.22130 -19.98652 -18.67420 -18.19260 -16.58671 -15.91283 -15.75360 -15.56491 -14.79517 -14.72107 -14.25662 -13.61755 -13.21621 -12.96261 -12.84981 -12.76072 -12.00156 -11.94614 -11.87132 -11.49987 -10.79623 -9.81122 -9.27815 -9.08229 -8.20970 -6.46712 0.43008 1.35140 1.39287 1.49688 1.71122 1.87605 2.03025 2.35842 2.98566 3.74324 4.00617 4.21192 4.48571 4.56752 4.83235 4.90146 5.03616 5.24508 5.43260 5.55760 5.57868 5.87275 5.92463 6.41399 6.52027 6.78568 6.88085 7.05048 7.30703 8.74988 Molecular weight = 193.09amu Principal moments of inertia in cm(-1) A = 0.039912 B = 0.012038 C = 0.011063 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 701.383510 B = 2325.389628 C = 2530.255346 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C 0.055 3.945 3 N -0.344 5.344 4 N -0.337 5.337 5 C 0.058 3.942 6 C -0.282 4.282 7 C 0.115 3.885 8 C 0.273 3.727 9 H 0.022 0.978 10 N -0.837 5.837 11 C -0.561 4.561 12 H 0.042 0.958 13 C 0.031 3.969 14 N -0.909 5.909 15 Si 0.962 3.038 16 H -0.278 1.278 17 H -0.277 1.277 18 H -0.273 1.273 19 H 0.153 0.847 20 H 0.104 0.896 21 H 0.152 0.848 22 H 0.223 0.777 23 H 0.155 0.845 24 H 0.325 0.675 25 H 0.352 0.648 26 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.702 3.830 0.047 6.065 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.236 4.236 2 C -0.055 4.055 3 N -0.121 5.121 4 N -0.157 5.157 5 C -0.128 4.128 6 C -0.310 4.310 7 C -0.009 4.009 8 C 0.161 3.839 9 H 0.040 0.960 10 N -0.367 5.367 11 C -0.601 4.601 12 H 0.060 0.940 13 C -0.170 4.170 14 N -0.548 5.548 15 Si 0.787 3.213 16 H -0.202 1.202 17 H -0.202 1.202 18 H -0.199 1.199 19 H 0.170 0.830 20 H 0.122 0.878 21 H 0.169 0.831 22 H 0.239 0.761 23 H 0.172 0.828 24 H 0.135 0.865 25 H 0.168 0.832 26 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -6.391 3.504 -0.630 7.316 hybrid contribution 1.836 -0.482 1.726 2.566 sum -4.555 3.022 1.096 5.575 Atomic orbital electron populations 1.24084 0.93204 1.04381 1.01969 1.21565 0.94692 0.85629 1.03580 1.46232 1.04118 1.05128 1.56652 1.77139 1.23494 0.87379 1.27659 1.24484 0.89731 1.01010 0.97598 1.21380 1.00185 0.91590 1.17875 1.22040 0.84470 0.98363 0.96066 1.17321 0.86936 0.87967 0.91716 0.95985 1.59294 1.12361 1.10263 1.54777 1.21819 1.25290 1.19760 0.93182 0.94001 1.25652 0.95531 0.94601 1.01243 1.69812 1.29580 1.23063 1.32357 0.85455 0.78187 0.77914 0.79747 1.20243 1.20210 1.19874 0.82955 0.87808 0.83053 0.76068 0.82767 0.86482 0.83175 0.91850 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -5.92 14.35 67.01 0.96 -4.96 15 2 C 0.06 2.09 10.47 82.66 0.87 2.95 15 3 N -0.34 -14.77 3.80 -182.40 -0.69 -15.46 15 4 N -0.34 -13.46 11.73 -56.98 -0.67 -14.13 15 5 C 0.06 2.03 12.02 85.24 1.02 3.05 15 6 C -0.28 -11.29 10.13 22.01 0.22 -11.07 15 7 C 0.11 5.24 5.91 41.27 0.24 5.48 15 8 C 0.27 13.57 2.94 43.42 0.13 13.70 15 9 H 0.02 1.20 7.18 -2.39 -0.02 1.19 15 10 N -0.84 -39.22 9.05 -174.96 -1.58 -40.80 15 11 C -0.56 -29.71 8.71 25.60 0.22 -29.49 15 12 H 0.04 2.31 7.74 -2.91 -0.02 2.29 15 13 C 0.03 1.62 5.38 84.66 0.46 2.07 15 14 N -0.91 -47.97 11.53 21.45 0.25 -47.72 15 15 Si 0.96 41.60 29.54 68.60 2.03 43.63 15 16 H -0.28 -12.17 7.11 99.48 0.71 -11.46 15 17 H -0.28 -11.70 7.11 99.48 0.71 -11.00 15 18 H -0.27 -11.44 7.11 99.48 0.71 -10.73 15 19 H 0.15 3.40 8.06 -2.91 -0.02 3.38 15 20 H 0.10 3.25 7.54 -2.91 -0.02 3.23 15 21 H 0.15 5.68 7.21 -2.91 -0.02 5.66 15 22 H 0.22 5.37 8.06 -2.91 -0.02 5.34 15 23 H 0.15 5.63 7.48 -2.91 -0.02 5.60 15 24 H 0.32 14.31 8.05 -89.70 -0.72 13.59 15 25 H 0.35 17.48 7.08 -89.70 -0.63 16.84 15 26 H 0.27 13.55 8.31 -92.71 -0.77 12.77 15 Total: -1.00 -59.33 233.58 3.30 -56.03 By element: Atomic # 1 Polarization: 36.87 SS G_CDS: -0.16 Total: 36.71 kcal Atomic # 6 Polarization: -22.38 SS G_CDS: 4.12 Total: -18.26 kcal Atomic # 7 Polarization: -115.42 SS G_CDS: -2.70 Total: -118.11 kcal Atomic # 14 Polarization: 41.60 SS G_CDS: 2.03 Total: 43.63 kcal Total: -59.33 3.30 -56.03 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261154936.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 130.145 kcal (2) G-P(sol) polarization free energy of solvation -59.331 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 70.813 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.297 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.034 kcal (6) G-S(sol) free energy of system = (1) + (5) 74.111 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds