Wall clock time and date at job start Mon Mar 30 2020 02:27:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46505 * 109.46895 * 2 1 4 4 C 1.36349 * 125.63298 * 265.25948 * 3 2 1 5 5 C 1.34847 * 108.21761 * 180.14942 * 4 3 2 6 6 C 1.40896 * 107.41771 * 359.63274 * 5 4 3 7 7 C 1.34849 * 107.41486 * 0.22942 * 6 5 4 8 8 C 1.50698 * 125.89026 * 179.97438 * 7 6 5 9 9 C 1.52999 * 109.46950 * 85.02723 * 8 7 6 10 10 C 1.50712 * 109.46957 * 180.02562 * 9 8 7 11 11 H 1.07991 * 120.00118 * 359.97438 * 10 9 8 12 12 C 1.37878 * 119.99482 * 179.97438 * 10 9 8 13 13 N 1.31511 * 120.00496 * 0.02562 * 12 10 9 14 14 Si 1.86804 * 119.99446 * 179.97438 * 12 10 9 15 15 H 1.48496 * 109.46967 * 90.00114 * 14 12 10 16 16 H 1.48504 * 109.46642 * 210.00018 * 14 12 10 17 17 H 1.48501 * 109.47107 * 329.99769 * 14 12 10 18 18 H 1.09001 * 109.46744 * 180.02562 * 1 2 3 19 19 H 1.08991 * 109.47024 * 300.00369 * 1 2 3 20 20 H 1.09001 * 109.46765 * 60.00525 * 1 2 3 21 21 H 1.08998 * 109.47603 * 239.99964 * 2 1 3 22 22 H 1.08999 * 109.47500 * 119.99430 * 2 1 3 23 23 H 1.07999 * 125.89168 * 0.03422 * 4 3 2 24 24 H 1.08002 * 126.29438 * 179.90446 * 5 4 3 25 25 H 1.07997 * 126.29283 * 180.25032 * 6 5 4 26 26 H 1.09006 * 109.47266 * 205.02733 * 8 7 6 27 27 H 1.09001 * 109.47479 * 325.02916 * 8 7 6 28 28 H 1.08999 * 109.47415 * 299.99859 * 9 8 7 29 29 H 1.08995 * 109.47264 * 60.00379 * 9 8 7 30 30 H 0.97002 * 119.99896 * 179.97438 * 13 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.3694 2.0997 -1.1044 5 6 2.7699 3.3228 -0.7019 6 6 2.6541 3.3638 0.7017 7 6 2.1920 2.1625 1.1038 8 6 1.9158 1.7537 2.5277 9 6 0.5090 2.2057 2.9243 10 6 0.2330 1.7974 4.3486 11 1 0.9855 1.2682 4.9141 12 6 -0.9803 2.0997 4.9295 13 7 -1.8970 2.7438 4.2407 14 14 -1.3227 1.5930 6.6946 15 1 -0.8938 2.6782 7.6131 16 1 -2.7770 1.3458 6.8654 17 1 -0.5695 0.3522 7.0084 18 1 -0.3633 -1.0277 0.0005 19 1 -0.3633 0.5139 0.8899 20 1 -0.3633 0.5138 -0.8901 21 1 1.8934 -0.5138 -0.8899 22 1 1.8934 -0.5137 0.8900 23 1 2.3347 1.7490 -2.1253 24 1 3.1121 4.1251 -1.3388 25 1 2.8914 4.2032 1.3384 26 1 1.9872 0.6695 2.6149 27 1 2.6469 2.2202 3.1880 28 1 0.4376 3.2899 2.8372 29 1 -0.2221 1.7392 2.2641 30 1 -2.7507 2.9561 4.6494 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261157314.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:27:56 Heat of formation + Delta-G solvation = 27.764681 kcal Electronic energy + Delta-G solvation = -11877.913482 eV Core-core repulsion = 9866.391010 eV Total energy + Delta-G solvation = -2011.522472 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 193.116 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -40.67988 -33.88298 -33.68267 -31.54207 -28.73360 -27.66574 -24.53570 -23.06090 -21.19806 -20.01459 -18.23428 -16.70287 -15.90928 -14.59983 -14.45596 -14.17777 -13.23099 -13.00143 -12.80872 -12.24018 -11.83597 -11.74734 -11.52639 -11.45975 -10.95229 -10.89432 -10.83007 -10.58935 -9.79108 -9.59458 -9.08845 -8.33996 -8.05601 -7.30020 -5.99263 -4.02560 2.84967 3.31807 3.38077 3.40809 3.47807 3.64063 4.45971 4.98471 5.33050 5.35997 5.40629 5.48293 5.76350 5.91736 5.94773 6.05435 6.18855 6.38058 6.52313 6.65471 6.87756 6.94250 6.99915 7.62192 7.71317 7.78251 7.94222 7.98561 8.02260 8.40990 9.04776 9.61320 11.11470 Molecular weight = 193.12amu Principal moments of inertia in cm(-1) A = 0.050060 B = 0.009117 C = 0.008474 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 559.190046 B = 3070.318111 C = 3303.480830 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C 0.105 3.895 3 N -0.445 5.445 4 C -0.039 4.039 5 C -0.201 4.201 6 C -0.216 4.216 7 C 0.049 3.951 8 C -0.050 4.050 9 C 0.030 3.970 10 C -0.523 4.523 11 H 0.055 0.945 12 C 0.058 3.942 13 N -0.893 5.893 14 Si 0.891 3.109 15 H -0.280 1.280 16 H -0.287 1.287 17 H -0.274 1.274 18 H 0.067 0.933 19 H 0.083 0.917 20 H 0.056 0.944 21 H 0.079 0.921 22 H 0.086 0.914 23 H 0.151 0.849 24 H 0.126 0.874 25 H 0.129 0.871 26 H 0.052 0.948 27 H 0.069 0.931 28 H 0.020 0.980 29 H 0.017 0.983 30 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.156 -4.261 -8.332 11.202 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.234 4.234 2 C -0.017 4.017 3 N -0.122 5.122 4 C -0.167 4.167 5 C -0.226 4.226 6 C -0.240 4.240 7 C -0.062 4.062 8 C -0.088 4.088 9 C -0.007 4.007 10 C -0.561 4.561 11 H 0.074 0.926 12 C -0.143 4.143 13 N -0.532 5.532 14 Si 0.719 3.281 15 H -0.206 1.206 16 H -0.213 1.213 17 H -0.199 1.199 18 H 0.086 0.914 19 H 0.102 0.898 20 H 0.075 0.925 21 H 0.098 0.902 22 H 0.104 0.896 23 H 0.168 0.832 24 H 0.144 0.856 25 H 0.147 0.853 26 H 0.070 0.930 27 H 0.088 0.912 28 H 0.039 0.961 29 H 0.035 0.965 30 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 5.853 -4.558 -8.333 11.157 hybrid contribution -0.360 -0.170 0.835 0.925 sum 5.493 -4.728 -7.498 10.428 Atomic orbital electron populations 1.22275 0.94271 1.02594 1.04249 1.21697 0.95827 0.80995 1.03207 1.44120 1.50540 1.11345 1.06185 1.21554 1.10228 0.93791 0.91137 1.20747 1.09560 0.96997 0.95317 1.20602 1.11108 0.97464 0.94828 1.20942 1.03805 0.91742 0.89756 1.20396 1.01538 0.99747 0.87144 1.19111 0.88788 0.97056 0.95732 1.21255 0.99985 1.36907 0.97959 0.92642 1.25013 0.96298 0.95215 0.97809 1.69976 1.06167 1.40403 1.36678 0.86614 0.77339 0.78955 0.85208 1.20618 1.21257 1.19904 0.91406 0.89846 0.92514 0.90232 0.89555 0.83172 0.85598 0.85311 0.92963 0.91203 0.96144 0.96456 0.93000 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.64 10.24 37.16 0.38 -2.26 16 2 C 0.10 1.50 6.54 -4.04 -0.03 1.47 16 3 N -0.45 -7.78 2.75 -112.54 -0.31 -8.09 16 4 C -0.04 -0.62 11.43 -16.75 -0.19 -0.82 16 5 C -0.20 -3.46 10.86 -39.78 -0.43 -3.89 16 6 C -0.22 -4.22 10.77 -39.78 -0.43 -4.65 16 7 C 0.05 0.99 6.14 -81.79 -0.50 0.49 16 8 C -0.05 -1.08 5.43 -27.88 -0.15 -1.23 16 9 C 0.03 0.79 4.96 -27.88 -0.14 0.66 16 10 C -0.52 -14.74 9.11 -34.43 -0.31 -15.06 16 11 H 0.06 1.51 7.74 -52.49 -0.41 1.10 16 12 C 0.06 1.66 5.46 -17.82 -0.10 1.57 16 13 N -0.89 -26.95 13.29 55.43 0.74 -26.21 16 14 Si 0.89 21.60 29.54 -169.99 -5.02 16.58 16 15 H -0.28 -6.72 7.11 56.52 0.40 -6.31 16 16 H -0.29 -6.89 7.11 56.52 0.40 -6.48 16 17 H -0.27 -6.48 7.11 56.52 0.40 -6.08 16 18 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 19 H 0.08 1.59 6.06 -51.93 -0.31 1.27 16 20 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 21 H 0.08 0.90 8.13 -51.93 -0.42 0.47 16 22 H 0.09 1.22 7.13 -51.93 -0.37 0.85 16 23 H 0.15 1.91 8.06 -52.49 -0.42 1.49 16 24 H 0.13 1.85 8.06 -52.49 -0.42 1.43 16 25 H 0.13 2.41 8.06 -52.49 -0.42 1.99 16 26 H 0.05 1.06 7.03 -51.93 -0.36 0.70 16 27 H 0.07 1.47 8.14 -51.93 -0.42 1.04 16 28 H 0.02 0.58 8.14 -51.93 -0.42 0.16 16 29 H 0.02 0.48 6.06 -51.93 -0.31 0.16 16 30 H 0.26 7.41 8.31 -40.82 -0.34 7.07 16 LS Contribution 255.00 15.07 3.84 3.84 Total: -1.00 -30.99 255.00 -6.94 -37.93 By element: Atomic # 1 Polarization: 3.96 SS G_CDS: -4.29 Total: -0.33 kcal Atomic # 6 Polarization: -21.82 SS G_CDS: -1.90 Total: -23.72 kcal Atomic # 7 Polarization: -34.73 SS G_CDS: 0.43 Total: -34.30 kcal Atomic # 14 Polarization: 21.60 SS G_CDS: -5.02 Total: 16.58 kcal Total LS contribution 3.84 Total: 3.84 kcal Total: -30.99 -6.94 -37.93 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261157314.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.695 kcal (2) G-P(sol) polarization free energy of solvation -30.992 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.703 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.938 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.930 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.765 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds