Wall clock time and date at job start Mon Mar 30 2020 02:27:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46505 * 109.46895 * 2 1 4 4 C 1.36349 * 125.63298 * 265.25948 * 3 2 1 5 5 C 1.34847 * 108.21761 * 180.14942 * 4 3 2 6 6 C 1.40896 * 107.41771 * 359.63274 * 5 4 3 7 7 C 1.34849 * 107.41486 * 0.22942 * 6 5 4 8 8 C 1.50698 * 125.89026 * 179.97438 * 7 6 5 9 9 C 1.52999 * 109.46950 * 85.02723 * 8 7 6 10 10 C 1.50712 * 109.46957 * 180.02562 * 9 8 7 11 11 H 1.07991 * 120.00118 * 359.97438 * 10 9 8 12 12 C 1.37878 * 119.99482 * 179.97438 * 10 9 8 13 13 N 1.31511 * 120.00496 * 0.02562 * 12 10 9 14 14 Si 1.86804 * 119.99446 * 179.97438 * 12 10 9 15 15 H 1.48496 * 109.46967 * 90.00114 * 14 12 10 16 16 H 1.48504 * 109.46642 * 210.00018 * 14 12 10 17 17 H 1.48501 * 109.47107 * 329.99769 * 14 12 10 18 18 H 1.09001 * 109.46744 * 180.02562 * 1 2 3 19 19 H 1.08991 * 109.47024 * 300.00369 * 1 2 3 20 20 H 1.09001 * 109.46765 * 60.00525 * 1 2 3 21 21 H 1.08998 * 109.47603 * 239.99964 * 2 1 3 22 22 H 1.08999 * 109.47500 * 119.99430 * 2 1 3 23 23 H 1.07999 * 125.89168 * 0.03422 * 4 3 2 24 24 H 1.08002 * 126.29438 * 179.90446 * 5 4 3 25 25 H 1.07997 * 126.29283 * 180.25032 * 6 5 4 26 26 H 1.09006 * 109.47266 * 205.02733 * 8 7 6 27 27 H 1.09001 * 109.47479 * 325.02916 * 8 7 6 28 28 H 1.08999 * 109.47415 * 299.99859 * 9 8 7 29 29 H 1.08995 * 109.47264 * 60.00379 * 9 8 7 30 30 H 0.97002 * 119.99896 * 179.97438 * 13 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.3694 2.0997 -1.1044 5 6 2.7699 3.3228 -0.7019 6 6 2.6541 3.3638 0.7017 7 6 2.1920 2.1625 1.1038 8 6 1.9158 1.7537 2.5277 9 6 0.5090 2.2057 2.9243 10 6 0.2330 1.7974 4.3486 11 1 0.9855 1.2682 4.9141 12 6 -0.9803 2.0997 4.9295 13 7 -1.8970 2.7438 4.2407 14 14 -1.3227 1.5930 6.6946 15 1 -0.8938 2.6782 7.6131 16 1 -2.7770 1.3458 6.8654 17 1 -0.5695 0.3522 7.0084 18 1 -0.3633 -1.0277 0.0005 19 1 -0.3633 0.5139 0.8899 20 1 -0.3633 0.5138 -0.8901 21 1 1.8934 -0.5138 -0.8899 22 1 1.8934 -0.5137 0.8900 23 1 2.3347 1.7490 -2.1253 24 1 3.1121 4.1251 -1.3388 25 1 2.8914 4.2032 1.3384 26 1 1.9872 0.6695 2.6149 27 1 2.6469 2.2202 3.1880 28 1 0.4376 3.2899 2.8372 29 1 -0.2221 1.7392 2.2641 30 1 -2.7507 2.9561 4.6494 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261157314.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:27:56 Heat of formation + Delta-G solvation = 10.411191 kcal Electronic energy + Delta-G solvation = -11878.665985 eV Core-core repulsion = 9866.391010 eV Total energy + Delta-G solvation = -2012.274975 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 193.116 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -42.04741 -35.88915 -34.94988 -33.51876 -30.03228 -29.43353 -26.43369 -24.27750 -23.16584 -21.36667 -19.66638 -18.62879 -17.53054 -16.54650 -15.86841 -15.56466 -14.77576 -14.55399 -14.44980 -14.01209 -13.49861 -13.13658 -12.99210 -12.85974 -12.72303 -12.61004 -12.42035 -12.12131 -11.70260 -11.57927 -11.20862 -10.55088 -9.41891 -8.75858 -8.18982 -6.31849 1.39591 1.41582 1.45765 1.52847 2.20066 2.21990 2.41385 3.13107 3.89194 4.08546 4.19319 4.29446 4.41037 4.49567 4.63076 4.74455 4.83996 4.92605 4.94912 5.10663 5.21738 5.45446 5.48984 5.55323 5.70729 5.85861 6.20357 6.25832 6.44857 6.68527 6.85678 7.37439 8.91965 Molecular weight = 193.12amu Principal moments of inertia in cm(-1) A = 0.050060 B = 0.009117 C = 0.008474 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 559.190046 B = 3070.318111 C = 3303.480830 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.099 3.901 3 N -0.447 5.447 4 C -0.021 4.021 5 C -0.219 4.219 6 C -0.235 4.235 7 C 0.015 3.985 8 C -0.034 4.034 9 C 0.041 3.959 10 C -0.543 4.543 11 H 0.063 0.937 12 C 0.001 3.999 13 N -0.933 5.933 14 Si 0.966 3.034 15 H -0.273 1.273 16 H -0.282 1.282 17 H -0.260 1.260 18 H 0.095 0.905 19 H 0.033 0.967 20 H 0.060 0.940 21 H 0.123 0.877 22 H 0.085 0.915 23 H 0.194 0.806 24 H 0.150 0.850 25 H 0.122 0.878 26 H 0.062 0.938 27 H 0.068 0.932 28 H -0.018 1.018 29 H -0.004 1.004 30 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.832 -5.687 -9.040 12.679 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C -0.021 4.021 3 N -0.124 5.124 4 C -0.151 4.151 5 C -0.243 4.243 6 C -0.259 4.259 7 C -0.098 4.098 8 C -0.072 4.072 9 C 0.003 3.997 10 C -0.581 4.581 11 H 0.081 0.919 12 C -0.197 4.197 13 N -0.573 5.573 14 Si 0.790 3.210 15 H -0.199 1.199 16 H -0.208 1.208 17 H -0.184 1.184 18 H 0.113 0.887 19 H 0.052 0.948 20 H 0.079 0.921 21 H 0.141 0.859 22 H 0.104 0.896 23 H 0.211 0.789 24 H 0.168 0.832 25 H 0.140 0.860 26 H 0.081 0.919 27 H 0.087 0.913 28 H 0.001 0.999 29 H 0.015 0.985 30 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 6.543 -5.999 -9.041 12.670 hybrid contribution -0.575 0.292 0.967 1.162 sum 5.968 -5.707 -8.074 11.549 Atomic orbital electron populations 1.22202 0.95053 1.03647 1.01865 1.21978 0.95083 0.79725 1.05352 1.44363 1.49974 1.12349 1.05695 1.22265 1.07375 0.93048 0.92377 1.21077 1.10375 0.98565 0.94306 1.20856 1.11261 0.97259 0.96520 1.20693 1.06331 0.92929 0.89813 1.20055 0.98281 1.00115 0.88748 1.18918 0.91425 0.94337 0.94983 1.21684 1.00455 1.36973 0.98972 0.91856 1.25988 0.96007 0.95003 1.02728 1.70122 1.06717 1.41574 1.38905 0.85441 0.77360 0.79081 0.79129 1.19883 1.20755 1.18445 0.88677 0.94775 0.92130 0.85857 0.89632 0.78882 0.83244 0.85970 0.91950 0.91323 0.99929 0.98538 0.92818 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.90 10.24 71.98 0.74 -4.16 16 2 C 0.10 2.60 6.54 86.38 0.57 3.17 16 3 N -0.45 -14.91 2.75 -509.96 -1.40 -16.31 16 4 C -0.02 -0.63 11.43 83.21 0.95 0.32 16 5 C -0.22 -7.17 10.86 22.14 0.24 -6.93 16 6 C -0.23 -9.25 10.77 22.14 0.24 -9.01 16 7 C 0.01 0.59 6.14 41.08 0.25 0.84 16 8 C -0.03 -1.49 5.43 29.85 0.16 -1.33 16 9 C 0.04 2.23 4.96 29.85 0.15 2.38 16 10 C -0.54 -31.28 9.11 25.60 0.23 -31.04 16 11 H 0.06 3.46 7.74 -2.91 -0.02 3.44 16 12 C 0.00 0.03 5.46 84.66 0.46 0.49 16 13 N -0.93 -57.79 13.29 21.45 0.28 -57.51 16 14 Si 0.97 44.48 29.54 68.60 2.03 46.50 16 15 H -0.27 -12.23 7.11 99.48 0.71 -11.52 16 16 H -0.28 -12.69 7.11 99.48 0.71 -11.98 16 17 H -0.26 -11.33 7.11 99.48 0.71 -10.63 16 18 H 0.09 2.17 8.14 -2.39 -0.02 2.15 16 19 H 0.03 1.32 6.06 -2.39 -0.01 1.31 16 20 H 0.06 1.66 8.14 -2.39 -0.02 1.64 16 21 H 0.12 2.20 8.13 -2.39 -0.02 2.18 16 22 H 0.09 2.26 7.13 -2.39 -0.02 2.24 16 23 H 0.19 3.91 8.06 -2.91 -0.02 3.89 16 24 H 0.15 4.04 8.06 -2.91 -0.02 4.02 16 25 H 0.12 4.77 8.06 -2.91 -0.02 4.75 16 26 H 0.06 2.56 7.03 -2.38 -0.02 2.54 16 27 H 0.07 2.97 8.14 -2.39 -0.02 2.95 16 28 H -0.02 -1.09 8.14 -2.39 -0.02 -1.11 16 29 H 0.00 -0.21 6.06 -2.39 -0.01 -0.23 16 30 H 0.26 15.28 8.31 -92.71 -0.77 14.51 16 Total: -1.00 -68.44 255.00 6.00 -62.45 By element: Atomic # 1 Polarization: 9.05 SS G_CDS: 1.10 Total: 10.15 kcal Atomic # 6 Polarization: -49.27 SS G_CDS: 3.99 Total: -45.28 kcal Atomic # 7 Polarization: -72.70 SS G_CDS: -1.12 Total: -73.82 kcal Atomic # 14 Polarization: 44.48 SS G_CDS: 2.03 Total: 46.50 kcal Total: -68.44 6.00 -62.45 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261157314.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.859 kcal (2) G-P(sol) polarization free energy of solvation -68.444 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.414 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.997 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.447 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.411 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds