Wall clock time and date at job start Mon Mar 30 2020 02:07:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46900 * 1 3 3 C 1.46901 * 110.99760 * 2 1 4 4 C 1.37785 * 110.99761 * 123.95326 * 2 1 3 5 5 N 1.32784 * 120.71055 * 340.10629 * 4 2 1 6 6 C 1.31811 * 120.95749 * 179.97438 * 5 4 2 7 7 N 1.32066 * 122.49132 * 0.02562 * 6 5 4 8 8 C 1.32029 * 121.30856 * 359.97438 * 7 6 5 9 9 C 1.40878 * 118.85323 * 0.02562 * 8 7 6 10 10 C 1.41075 * 121.09912 * 179.97438 * 9 8 7 11 11 H 1.08003 * 119.99881 * 154.63705 * 10 9 8 12 12 C 1.39956 * 120.00102 * 334.64299 * 10 9 8 13 13 N 1.30859 * 120.00000 * 343.21755 * 12 10 9 14 14 Si 1.86802 * 119.99990 * 163.21327 * 12 10 9 15 15 H 1.48500 * 109.47277 * 0.02562 * 14 12 10 16 16 H 1.48499 * 109.46941 * 120.00005 * 14 12 10 17 17 H 1.48497 * 109.46946 * 239.99973 * 14 12 10 18 18 H 1.09000 * 109.47674 * 296.04278 * 1 2 3 19 19 H 1.09006 * 109.47086 * 56.04391 * 1 2 3 20 20 H 1.09003 * 109.46952 * 176.03814 * 1 2 3 21 21 H 1.08994 * 109.47293 * 187.10182 * 3 2 1 22 22 H 1.09002 * 109.47447 * 307.11227 * 3 2 1 23 23 H 1.09005 * 109.46867 * 67.10539 * 3 2 1 24 24 H 1.08000 * 118.75598 * 179.97438 * 6 5 4 25 25 H 1.08009 * 120.57357 * 180.02562 * 8 7 6 26 26 H 0.97000 * 120.00417 * 179.97438 * 13 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3715 0.0000 4 6 1.9627 -0.7184 1.0670 5 7 1.2035 -0.9647 2.1282 6 6 1.6707 -1.6518 3.1514 7 7 2.9018 -2.1288 3.1829 8 6 3.7369 -1.9392 2.1780 9 6 3.2955 -1.2118 1.0552 10 6 4.1483 -0.9807 -0.0446 11 1 3.7300 -0.8058 -1.0249 12 6 5.5363 -0.9781 0.1346 13 7 6.0407 -0.8597 1.3362 14 14 6.6689 -1.1440 -1.3417 15 1 5.8558 -1.2620 -2.5787 16 1 7.5396 0.0554 -1.4347 17 1 7.5118 -2.3565 -1.1851 18 1 -0.3634 0.4512 0.9233 19 1 -0.3633 0.5740 -0.8525 20 1 -0.3633 -1.0252 -0.0710 21 1 3.0776 1.3453 -0.1270 22 1 1.5467 1.9329 -0.8195 23 1 1.7523 1.8539 0.9468 24 1 1.0224 -1.8310 3.9964 25 1 4.7412 -2.3349 2.2161 26 1 7.0027 -0.8583 1.4605 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261239590.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:07:44 Heat of formation + Delta-G solvation = 45.440581 kcal Electronic energy + Delta-G solvation = -12020.175740 eV Core-core repulsion = 9905.879409 eV Total energy + Delta-G solvation = -2114.296331 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 193.091 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -39.31563 -36.18931 -34.26804 -31.24844 -30.19295 -26.93929 -25.89083 -24.16170 -21.96227 -20.62598 -17.49436 -16.31974 -16.15519 -15.02022 -14.37084 -13.56321 -13.48993 -13.21739 -12.65041 -12.14706 -11.80137 -11.56770 -11.39111 -11.25519 -11.03038 -10.79439 -10.62977 -9.56775 -9.49756 -9.10387 -8.22659 -7.79168 -7.37148 -6.96668 -4.53353 2.51734 2.75548 2.99372 3.05591 3.08802 3.79329 4.53036 4.73954 5.58312 5.69034 5.87099 5.98907 6.09046 6.16871 6.29468 6.51561 6.61511 6.69293 6.95356 6.98173 7.22135 7.63664 7.78136 8.09138 8.27344 8.52124 8.58204 8.93326 9.83496 9.93945 Molecular weight = 193.09amu Principal moments of inertia in cm(-1) A = 0.037149 B = 0.015566 C = 0.011797 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 753.533336 B = 1798.384008 C = 2373.013186 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.040 3.960 2 N -0.465 5.465 3 C 0.035 3.965 4 C 0.199 3.801 5 N -0.531 5.531 6 C 0.145 3.855 7 N -0.517 5.517 8 C 0.075 3.925 9 C 0.030 3.970 10 C -0.416 4.416 11 H 0.095 0.905 12 C 0.069 3.931 13 N -0.786 5.786 14 Si 0.916 3.084 15 H -0.256 1.256 16 H -0.273 1.273 17 H -0.270 1.270 18 H 0.035 0.965 19 H 0.054 0.946 20 H 0.060 0.940 21 H 0.083 0.917 22 H 0.059 0.941 23 H 0.019 0.981 24 H 0.155 0.845 25 H 0.157 0.843 26 H 0.287 0.713 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.404 2.044 -3.810 4.546 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.108 4.108 2 N -0.185 5.185 3 C -0.112 4.112 4 C -0.041 4.041 5 N -0.248 5.248 6 C -0.139 4.139 7 N -0.231 5.231 8 C -0.096 4.096 9 C 0.021 3.979 10 C -0.446 4.446 11 H 0.113 0.887 12 C -0.150 4.150 13 N -0.411 5.411 14 Si 0.740 3.260 15 H -0.180 1.180 16 H -0.198 1.198 17 H -0.195 1.195 18 H 0.054 0.946 19 H 0.073 0.927 20 H 0.079 0.921 21 H 0.102 0.898 22 H 0.078 0.922 23 H 0.037 0.963 24 H 0.172 0.828 25 H 0.174 0.826 26 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -1.682 1.698 -3.310 4.082 hybrid contribution 0.825 0.484 -0.523 1.090 sum -0.857 2.182 -3.832 4.492 Atomic orbital electron populations 1.22104 0.87481 1.01636 0.99575 1.59002 1.07746 1.13043 1.38720 1.22310 1.02523 0.87352 0.99017 1.19730 0.93308 1.01819 0.89280 1.67630 1.39849 1.16278 1.01086 1.23298 0.91526 1.02616 0.96480 1.67766 1.04391 1.21206 1.29691 1.23238 0.98845 0.97540 0.90018 1.18822 0.91805 0.91894 0.95353 1.19552 0.89749 1.39191 0.96153 0.88661 1.26125 0.99486 0.92008 0.97420 1.69776 1.15026 1.32939 1.23311 0.86110 0.79501 0.78823 0.81582 1.17974 1.19801 1.19468 0.94617 0.92750 0.92149 0.89839 0.92218 0.96251 0.82763 0.82571 0.90211 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.76 8.93 60.06 0.54 1.29 15 2 N -0.47 -10.23 4.43 -188.24 -0.83 -11.06 15 3 C 0.04 0.69 9.34 60.07 0.56 1.25 15 4 C 0.20 5.03 5.98 -154.71 -0.93 4.11 15 5 N -0.53 -13.30 8.95 -13.32 -0.12 -13.42 15 6 C 0.15 3.59 12.26 -91.91 -1.13 2.46 15 7 N -0.52 -13.50 10.40 -14.00 -0.15 -13.64 15 8 C 0.07 2.00 9.98 -16.47 -0.16 1.84 15 9 C 0.03 0.79 5.54 -106.33 -0.59 0.20 15 10 C -0.42 -10.39 7.38 -37.86 -0.28 -10.67 15 11 H 0.10 2.34 7.69 -52.48 -0.40 1.94 15 12 C 0.07 1.61 5.19 -17.32 -0.09 1.52 15 13 N -0.79 -19.07 11.02 55.55 0.61 -18.46 15 14 Si 0.92 17.48 29.59 -169.99 -5.03 12.45 15 15 H -0.26 -4.88 7.11 56.52 0.40 -4.48 15 16 H -0.27 -5.12 7.11 56.52 0.40 -4.72 15 17 H -0.27 -5.09 7.11 56.52 0.40 -4.69 15 18 H 0.04 0.69 7.67 -51.93 -0.40 0.29 15 19 H 0.05 0.85 8.08 -51.93 -0.42 0.43 15 20 H 0.06 1.16 8.14 -51.93 -0.42 0.73 15 21 H 0.08 1.75 6.85 -51.93 -0.36 1.39 15 22 H 0.06 0.96 8.07 -51.93 -0.42 0.54 15 23 H 0.02 0.38 8.13 -51.93 -0.42 -0.04 15 24 H 0.16 3.30 8.06 -52.49 -0.42 2.88 15 25 H 0.16 4.16 6.31 -52.48 -0.33 3.83 15 26 H 0.29 6.27 8.30 -40.82 -0.34 5.93 15 LS Contribution 227.60 15.07 3.43 3.43 Total: -1.00 -27.78 227.60 -6.89 -34.67 By element: Atomic # 1 Polarization: 6.76 SS G_CDS: -2.73 Total: 4.03 kcal Atomic # 6 Polarization: 4.08 SS G_CDS: -2.08 Total: 2.00 kcal Atomic # 7 Polarization: -56.10 SS G_CDS: -0.49 Total: -56.59 kcal Atomic # 14 Polarization: 17.48 SS G_CDS: -5.03 Total: 12.45 kcal Total LS contribution 3.43 Total: 3.43 kcal Total: -27.78 -6.89 -34.67 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261239590.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.114 kcal (2) G-P(sol) polarization free energy of solvation -27.780 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 52.334 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.893 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.673 kcal (6) G-S(sol) free energy of system = (1) + (5) 45.441 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds