Wall clock time and date at job start Mon Mar 30 2020 02:07:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46900 * 1 3 3 C 1.46901 * 110.99760 * 2 1 4 4 C 1.37785 * 110.99761 * 123.95326 * 2 1 3 5 5 N 1.32784 * 120.71055 * 340.10629 * 4 2 1 6 6 C 1.31811 * 120.95749 * 179.97438 * 5 4 2 7 7 N 1.32066 * 122.49132 * 0.02562 * 6 5 4 8 8 C 1.32029 * 121.30856 * 359.97438 * 7 6 5 9 9 C 1.40878 * 118.85323 * 0.02562 * 8 7 6 10 10 C 1.41075 * 121.09912 * 179.97438 * 9 8 7 11 11 H 1.08003 * 119.99881 * 154.63705 * 10 9 8 12 12 C 1.39956 * 120.00102 * 334.64299 * 10 9 8 13 13 N 1.30859 * 120.00000 * 343.21755 * 12 10 9 14 14 Si 1.86802 * 119.99990 * 163.21327 * 12 10 9 15 15 H 1.48500 * 109.47277 * 0.02562 * 14 12 10 16 16 H 1.48499 * 109.46941 * 120.00005 * 14 12 10 17 17 H 1.48497 * 109.46946 * 239.99973 * 14 12 10 18 18 H 1.09000 * 109.47674 * 296.04278 * 1 2 3 19 19 H 1.09006 * 109.47086 * 56.04391 * 1 2 3 20 20 H 1.09003 * 109.46952 * 176.03814 * 1 2 3 21 21 H 1.08994 * 109.47293 * 187.10182 * 3 2 1 22 22 H 1.09002 * 109.47447 * 307.11227 * 3 2 1 23 23 H 1.09005 * 109.46867 * 67.10539 * 3 2 1 24 24 H 1.08000 * 118.75598 * 179.97438 * 6 5 4 25 25 H 1.08009 * 120.57357 * 180.02562 * 8 7 6 26 26 H 0.97000 * 120.00417 * 179.97438 * 13 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3715 0.0000 4 6 1.9627 -0.7184 1.0670 5 7 1.2035 -0.9647 2.1282 6 6 1.6707 -1.6518 3.1514 7 7 2.9018 -2.1288 3.1829 8 6 3.7369 -1.9392 2.1780 9 6 3.2955 -1.2118 1.0552 10 6 4.1483 -0.9807 -0.0446 11 1 3.7300 -0.8058 -1.0249 12 6 5.5363 -0.9781 0.1346 13 7 6.0407 -0.8597 1.3362 14 14 6.6689 -1.1440 -1.3417 15 1 5.8558 -1.2620 -2.5787 16 1 7.5396 0.0554 -1.4347 17 1 7.5118 -2.3565 -1.1851 18 1 -0.3634 0.4512 0.9233 19 1 -0.3633 0.5740 -0.8525 20 1 -0.3633 -1.0252 -0.0710 21 1 3.0776 1.3453 -0.1270 22 1 1.5467 1.9329 -0.8195 23 1 1.7523 1.8539 0.9468 24 1 1.0224 -1.8310 3.9964 25 1 4.7412 -2.3349 2.2161 26 1 7.0027 -0.8583 1.4605 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261239590.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:07:44 Heat of formation + Delta-G solvation = 28.643541 kcal Electronic energy + Delta-G solvation = -12020.904114 eV Core-core repulsion = 9905.879409 eV Total energy + Delta-G solvation = -2115.024705 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 193.091 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -41.19912 -37.94169 -36.12879 -33.16136 -32.07936 -28.53993 -27.72180 -25.93479 -23.86124 -22.45221 -19.38982 -18.16636 -17.97609 -16.78470 -16.06164 -15.33822 -15.20319 -14.91842 -14.51134 -13.97297 -13.55358 -13.13919 -13.09101 -12.80473 -12.65980 -12.48747 -12.14819 -11.41388 -11.29272 -11.04207 -10.11295 -9.73259 -9.19130 -8.76831 -6.44650 0.66314 0.78804 1.43203 1.52837 1.59997 2.19204 2.69403 3.03898 3.65324 3.90985 4.08124 4.39304 4.51547 4.61147 4.74888 4.84106 4.99556 5.05873 5.06298 5.13909 5.34446 5.83679 5.99147 6.21242 6.37421 6.63899 6.69737 7.00311 7.87630 8.17049 Molecular weight = 193.09amu Principal moments of inertia in cm(-1) A = 0.037149 B = 0.015566 C = 0.011797 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 753.533336 B = 1798.384008 C = 2373.013186 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.044 3.956 2 N -0.476 5.476 3 C 0.041 3.959 4 C 0.195 3.805 5 N -0.535 5.535 6 C 0.130 3.870 7 N -0.528 5.528 8 C 0.047 3.953 9 C 0.003 3.997 10 C -0.428 4.428 11 H 0.096 0.904 12 C 0.034 3.966 13 N -0.811 5.811 14 Si 0.992 3.008 15 H -0.253 1.253 16 H -0.263 1.263 17 H -0.264 1.264 18 H 0.028 0.972 19 H 0.093 0.907 20 H 0.051 0.949 21 H 0.065 0.935 22 H 0.101 0.899 23 H 0.010 0.990 24 H 0.184 0.816 25 H 0.148 0.852 26 H 0.298 0.702 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.307 2.732 -5.374 6.169 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.104 4.104 2 N -0.196 5.196 3 C -0.106 4.106 4 C -0.048 4.048 5 N -0.253 5.253 6 C -0.154 4.154 7 N -0.242 5.242 8 C -0.123 4.123 9 C -0.005 4.005 10 C -0.457 4.457 11 H 0.114 0.886 12 C -0.184 4.184 13 N -0.436 5.436 14 Si 0.811 3.189 15 H -0.177 1.177 16 H -0.188 1.188 17 H -0.189 1.189 18 H 0.047 0.953 19 H 0.111 0.889 20 H 0.070 0.930 21 H 0.083 0.917 22 H 0.119 0.881 23 H 0.029 0.971 24 H 0.201 0.799 25 H 0.165 0.835 26 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -1.592 2.387 -4.853 5.637 hybrid contribution 0.776 0.315 -0.043 0.839 sum -0.816 2.702 -4.895 5.651 Atomic orbital electron populations 1.22162 0.85440 1.01822 1.00928 1.59008 1.09573 1.13886 1.37116 1.22310 1.01693 0.86369 1.00217 1.20123 0.93124 1.01571 0.89940 1.67721 1.39801 1.16541 1.01220 1.23883 0.91564 1.02549 0.97426 1.67738 1.04989 1.21699 1.29770 1.23146 0.98941 0.99151 0.91097 1.19139 0.92972 0.92555 0.95876 1.19718 0.90724 1.39531 0.95703 0.88574 1.27002 1.00360 0.90756 1.00276 1.69810 1.16151 1.32215 1.25390 0.84992 0.77198 0.79104 0.77566 1.17654 1.18764 1.18878 0.95290 0.88890 0.92988 0.91668 0.88074 0.97103 0.79940 0.83493 0.89130 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 1.56 8.93 127.69 1.14 2.70 15 2 N -0.48 -20.25 4.43 -749.47 -3.32 -23.57 15 3 C 0.04 1.53 9.34 127.69 1.19 2.72 15 4 C 0.19 9.80 5.98 134.11 0.80 10.60 15 5 N -0.54 -26.69 8.95 -196.05 -1.75 -28.44 15 6 C 0.13 6.41 12.26 180.80 2.22 8.63 15 7 N -0.53 -28.01 10.40 -198.19 -2.06 -30.07 15 8 C 0.05 2.55 9.98 85.31 0.85 3.40 15 9 C 0.00 0.17 5.54 -20.97 -0.12 0.05 15 10 C -0.43 -21.29 7.38 23.38 0.17 -21.12 15 11 H 0.10 4.66 7.69 -2.91 -0.02 4.63 15 12 C 0.03 1.55 5.19 85.25 0.44 1.99 15 13 N -0.81 -39.32 11.02 21.83 0.24 -39.08 15 14 Si 0.99 34.67 29.59 68.60 2.03 36.70 15 15 H -0.25 -8.68 7.11 99.48 0.71 -7.98 15 16 H -0.26 -8.77 7.11 99.48 0.71 -8.07 15 17 H -0.26 -8.98 7.11 99.48 0.71 -8.27 15 18 H 0.03 1.06 7.67 -2.39 -0.02 1.04 15 19 H 0.09 2.56 8.08 -2.38 -0.02 2.54 15 20 H 0.05 1.91 8.14 -2.39 -0.02 1.89 15 21 H 0.06 2.66 6.85 -2.39 -0.02 2.65 15 22 H 0.10 2.90 8.07 -2.39 -0.02 2.88 15 23 H 0.01 0.40 8.13 -2.38 -0.02 0.38 15 24 H 0.18 7.68 8.06 -2.91 -0.02 7.66 15 25 H 0.15 8.10 6.31 -2.91 -0.02 8.08 15 26 H 0.30 12.85 8.30 -92.71 -0.77 12.08 15 Total: -1.00 -58.96 227.60 3.01 -55.95 By element: Atomic # 1 Polarization: 18.35 SS G_CDS: 1.18 Total: 19.52 kcal Atomic # 6 Polarization: 2.29 SS G_CDS: 6.70 Total: 8.99 kcal Atomic # 7 Polarization: -114.26 SS G_CDS: -6.90 Total: -121.16 kcal Atomic # 14 Polarization: 34.67 SS G_CDS: 2.03 Total: 36.70 kcal Total: -58.96 3.01 -55.95 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261239590.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 84.594 kcal (2) G-P(sol) polarization free energy of solvation -58.957 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.637 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.007 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.950 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.644 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds