Wall clock time and date at job start Mon Mar 30 2020 02:14:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.34855 * 125.88773 * 2 1 4 4 C 1.40886 * 107.41902 * 180.02562 * 3 2 1 5 5 C 1.34853 * 107.41488 * 359.97438 * 4 3 2 6 6 C 1.50701 * 125.88789 * 180.02562 * 5 4 3 7 7 H 1.09002 * 109.47060 * 205.02837 * 6 5 4 8 8 C 1.52997 * 109.47212 * 85.02782 * 6 5 4 9 9 C 1.50699 * 109.47269 * 325.02690 * 6 5 4 10 10 H 1.08000 * 119.99792 * 0.02562 * 9 6 5 11 11 C 1.37878 * 119.99902 * 179.97438 * 9 6 5 12 12 N 1.31515 * 120.00126 * 0.02562 * 11 9 6 13 13 Si 1.86803 * 119.99745 * 180.02562 * 11 9 6 14 14 H 1.48496 * 109.47319 * 60.00570 * 13 11 9 15 15 H 1.48503 * 109.46734 * 180.02562 * 13 11 9 16 16 H 1.48503 * 109.47266 * 300.00384 * 13 11 9 17 17 N 1.36339 * 125.89543 * 180.33587 * 2 1 3 18 18 C 1.46501 * 125.63426 * 359.97438 * 17 2 1 19 19 H 1.08997 * 109.47080 * 89.97983 * 1 2 3 20 20 H 1.09003 * 109.46768 * 209.97303 * 1 2 3 21 21 H 1.08995 * 109.47741 * 329.97090 * 1 2 3 22 22 H 1.07999 * 126.28938 * 0.04335 * 3 2 1 23 23 H 1.08001 * 126.29011 * 179.97438 * 4 3 2 24 24 H 1.09002 * 109.47153 * 299.99998 * 8 6 5 25 25 H 1.08998 * 109.47533 * 59.99628 * 8 6 5 26 26 H 1.08996 * 109.47853 * 179.97438 * 8 6 5 27 27 H 0.96999 * 120.00073 * 179.97438 * 12 11 9 28 28 H 1.09000 * 109.47219 * 270.19607 * 18 17 2 29 29 H 1.08988 * 109.47217 * 30.19965 * 18 17 2 30 30 H 1.09002 * 109.46853 * 150.20216 * 18 17 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2975 1.0926 0.0000 4 6 3.6338 0.6462 -0.0006 5 6 3.6090 -0.7021 -0.0004 6 6 4.8135 -1.6078 -0.0003 7 1 4.5442 -2.5705 -0.4349 8 6 5.2963 -1.8141 1.4368 9 6 5.9147 -0.9793 -0.8148 10 1 5.7581 -0.0198 -1.2852 11 6 7.1223 -1.6289 -0.9587 12 7 7.3131 -2.7971 -0.3856 13 14 8.4875 -0.8495 -1.9679 14 1 8.8540 0.4620 -1.3756 15 1 9.6744 -1.7421 -1.9678 16 1 8.0194 -0.6491 -3.3628 17 7 2.3064 -1.1044 -0.0065 18 6 1.8422 -2.4940 -0.0141 19 1 -0.3633 0.0004 -1.0276 20 1 -0.3633 -0.8903 0.5134 21 1 -0.3634 0.8896 0.5142 22 1 1.9670 2.1207 0.0007 23 1 4.5159 1.2694 -0.0011 24 1 5.5656 -0.8515 1.8714 25 1 4.4999 -2.2686 2.0260 26 1 6.1672 -2.4696 1.4370 27 1 8.1626 -3.2542 -0.4871 28 1 1.7242 -2.8432 1.0117 29 1 0.8846 -2.5543 -0.5310 30 1 2.5728 -3.1182 -0.5286 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261247607.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:14:54 Heat of formation + Delta-G solvation = 16.663834 kcal Electronic energy + Delta-G solvation = -12088.384174 eV Core-core repulsion = 10076.380333 eV Total energy + Delta-G solvation = -2012.003841 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 193.116 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -42.01712 -36.30291 -33.58191 -33.25594 -31.21899 -27.34549 -27.04164 -26.23130 -23.03885 -20.98480 -19.57599 -18.00922 -17.34311 -16.30262 -16.15970 -15.13149 -14.77428 -14.01476 -13.87615 -13.80396 -13.53059 -13.32123 -13.03683 -12.83265 -12.81063 -12.50188 -12.41784 -12.21906 -12.07986 -11.53794 -10.96894 -10.48247 -9.31369 -8.47405 -8.11483 -6.23711 1.41736 1.43472 1.50580 1.55489 2.26142 2.30307 2.47298 3.16870 4.07353 4.16959 4.42274 4.42859 4.56067 4.65550 4.76173 4.88038 4.89028 4.97890 5.07405 5.14884 5.18702 5.47511 5.53707 5.69761 5.82702 5.99292 6.24893 6.41057 6.65825 6.80277 6.84053 7.43878 8.93785 Molecular weight = 193.12amu Principal moments of inertia in cm(-1) A = 0.054071 B = 0.010506 C = 0.009584 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 517.710208 B = 2664.422217 C = 2920.716099 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 C -0.010 4.010 3 C -0.224 4.224 4 C -0.227 4.227 5 C 0.035 3.965 6 C 0.106 3.894 7 H 0.007 0.993 8 C -0.115 4.115 9 C -0.521 4.521 10 H 0.052 0.948 11 C 0.014 3.986 12 N -0.918 5.918 13 Si 0.957 3.043 14 H -0.272 1.272 15 H -0.280 1.280 16 H -0.274 1.274 17 N -0.458 5.458 18 C 0.070 3.930 19 H 0.077 0.923 20 H 0.073 0.927 21 H 0.090 0.910 22 H 0.145 0.855 23 H 0.112 0.888 24 H 0.024 0.976 25 H 0.022 0.978 26 H 0.065 0.935 27 H 0.263 0.737 28 H 0.078 0.922 29 H 0.108 0.892 30 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.394 2.002 0.881 11.602 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.121 4.121 3 C -0.248 4.248 4 C -0.251 4.251 5 C -0.076 4.076 6 C 0.087 3.913 7 H 0.025 0.975 8 C -0.173 4.173 9 C -0.560 4.560 10 H 0.070 0.930 11 C -0.184 4.184 12 N -0.557 5.557 13 Si 0.782 3.218 14 H -0.197 1.197 15 H -0.205 1.205 16 H -0.199 1.199 17 N -0.135 5.135 18 C -0.071 4.071 19 H 0.095 0.905 20 H 0.092 0.908 21 H 0.109 0.891 22 H 0.163 0.837 23 H 0.130 0.870 24 H 0.043 0.957 25 H 0.041 0.959 26 H 0.084 0.916 27 H 0.072 0.928 28 H 0.097 0.903 29 H 0.126 0.874 30 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -11.400 1.497 0.899 11.533 hybrid contribution 1.232 0.244 -0.458 1.336 sum -10.169 1.741 0.442 10.326 Atomic orbital electron populations 1.20302 0.85244 1.04006 1.03117 1.20902 0.94993 0.85376 1.10788 1.20853 0.92251 0.98349 1.13362 1.20645 0.97202 0.93736 1.13471 1.21034 0.84861 0.95417 1.06319 1.17195 0.88182 0.91923 0.93987 0.97544 1.21563 1.00217 0.99543 0.96001 1.21361 0.98287 1.05316 1.31018 0.92965 1.25701 1.00522 0.95402 0.96812 1.69983 1.25434 1.15442 1.44881 0.85626 0.78470 0.78460 0.79209 1.19722 1.20493 1.19888 1.44144 1.05210 1.06911 1.57197 1.22086 1.01839 0.79520 1.03702 0.90458 0.90793 0.89108 0.83682 0.87003 0.95728 0.95895 0.91646 0.92788 0.90312 0.87350 0.91253 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.53 9.87 71.24 0.70 -0.83 16 2 C -0.01 -0.35 6.89 41.08 0.28 -0.06 16 3 C -0.22 -8.59 10.76 22.14 0.24 -8.35 16 4 C -0.23 -10.54 9.73 22.14 0.22 -10.32 16 5 C 0.04 1.68 5.81 41.08 0.24 1.92 16 6 C 0.11 5.65 2.49 -12.29 -0.03 5.62 16 7 H 0.01 0.37 6.91 -2.39 -0.02 0.35 16 8 C -0.12 -5.88 8.95 71.98 0.64 -5.23 16 9 C -0.52 -29.95 8.24 25.60 0.21 -29.74 16 10 H 0.05 3.03 6.81 -2.91 -0.02 3.01 16 11 C 0.01 0.80 5.30 84.65 0.45 1.24 16 12 N -0.92 -53.22 11.32 21.45 0.24 -52.98 16 13 Si 0.96 44.63 29.54 68.60 2.03 46.65 16 14 H -0.27 -12.42 7.11 99.48 0.71 -11.72 16 15 H -0.28 -12.59 7.11 99.48 0.71 -11.88 16 16 H -0.27 -12.52 7.11 99.48 0.71 -11.81 16 17 N -0.46 -17.79 3.15 -518.69 -1.63 -19.42 16 18 C 0.07 2.08 10.53 127.77 1.35 3.42 16 19 H 0.08 1.51 8.14 -2.39 -0.02 1.49 16 20 H 0.07 1.38 7.72 -2.39 -0.02 1.36 16 21 H 0.09 1.69 8.14 -2.39 -0.02 1.67 16 22 H 0.15 4.69 8.06 -2.91 -0.02 4.67 16 23 H 0.11 5.40 7.63 -2.91 -0.02 5.38 16 24 H 0.02 1.23 8.14 -2.39 -0.02 1.21 16 25 H 0.02 1.02 8.14 -2.39 -0.02 1.00 16 26 H 0.06 3.59 6.07 -2.39 -0.01 3.58 16 27 H 0.26 14.46 8.31 -92.71 -0.77 13.69 16 28 H 0.08 2.09 8.14 -2.39 -0.02 2.07 16 29 H 0.11 2.39 7.64 -2.39 -0.02 2.37 16 30 H 0.07 2.29 6.94 -2.39 -0.02 2.28 16 Total: -1.00 -65.41 250.72 6.04 -59.37 By element: Atomic # 1 Polarization: 7.61 SS G_CDS: 1.10 Total: 8.71 kcal Atomic # 6 Polarization: -46.64 SS G_CDS: 4.30 Total: -42.34 kcal Atomic # 7 Polarization: -71.01 SS G_CDS: -1.39 Total: -72.40 kcal Atomic # 14 Polarization: 44.63 SS G_CDS: 2.03 Total: 46.65 kcal Total: -65.41 6.04 -59.37 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261247607.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.039 kcal (2) G-P(sol) polarization free energy of solvation -65.413 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.626 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.038 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.375 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.664 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds