Wall clock time and date at job start Mon Mar 30 2020 02:14:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.34849 * 125.89117 * 2 1 4 4 C 1.40889 * 107.41879 * 179.88668 * 3 2 1 5 5 C 1.34860 * 107.41437 * 0.38126 * 4 3 2 6 6 C 1.50699 * 125.88715 * 179.73715 * 5 4 3 7 7 H 1.09004 * 109.46739 * 155.04443 * 6 5 4 8 8 C 1.52998 * 109.47007 * 275.03414 * 6 5 4 9 9 C 1.50696 * 109.47446 * 35.03955 * 6 5 4 10 10 H 1.07994 * 120.00169 * 359.97438 * 9 6 5 11 11 C 1.37877 * 119.99933 * 179.97438 * 9 6 5 12 12 N 1.31516 * 119.99957 * 0.02562 * 11 9 6 13 13 Si 1.86801 * 120.00134 * 179.97438 * 11 9 6 14 14 H 1.48505 * 109.46932 * 90.00275 * 13 11 9 15 15 H 1.48501 * 109.47501 * 210.00448 * 13 11 9 16 16 H 1.48503 * 109.47057 * 330.00569 * 13 11 9 17 17 N 1.36339 * 108.21701 * 359.76482 * 5 4 3 18 18 C 1.46500 * 125.63277 * 179.97438 * 17 5 4 19 19 H 1.09002 * 109.47152 * 269.68885 * 1 2 3 20 20 H 1.09001 * 109.46980 * 149.68985 * 1 2 3 21 21 H 1.09004 * 109.47113 * 29.68966 * 1 2 3 22 22 H 1.07996 * 126.28982 * 0.02562 * 3 2 1 23 23 H 1.08002 * 126.29548 * 180.12949 * 4 3 2 24 24 H 1.08998 * 109.47197 * 300.00820 * 8 6 5 25 25 H 1.09004 * 109.47120 * 60.00165 * 8 6 5 26 26 H 1.09001 * 109.47517 * 180.02562 * 8 6 5 27 27 H 0.97004 * 120.00002 * 179.97438 * 12 11 9 28 28 H 1.08993 * 109.47543 * 270.00504 * 18 17 5 29 29 H 1.09000 * 109.46878 * 30.00632 * 18 17 5 30 30 H 1.09009 * 109.46922 * 150.00642 * 18 17 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2976 1.0925 0.0000 4 6 3.6339 0.6461 0.0027 5 6 3.6090 -0.7023 -0.0044 6 6 4.8134 -1.6080 -0.0102 7 1 4.5441 -2.5733 0.4186 8 6 5.2958 -1.8059 -1.4486 9 6 5.9148 -0.9846 0.8078 10 1 5.7585 -0.0280 1.2840 11 6 7.1221 -1.6355 0.9484 12 7 7.3126 -2.8003 0.3682 13 14 8.4877 -0.8624 1.9618 14 1 8.3672 -1.3051 3.3742 15 1 9.8049 -1.2844 1.4214 16 1 8.3764 0.6170 1.8956 17 7 2.3063 -1.1046 -0.0060 18 6 1.8421 -2.4940 -0.0136 19 1 -0.3633 -0.0056 1.0277 20 1 -0.3633 -0.8872 -0.5187 21 1 -0.3633 0.8928 -0.5090 22 1 1.9671 2.1206 0.0004 23 1 4.5161 1.2691 0.0053 24 1 4.4991 -2.2568 -2.0402 25 1 5.5650 -0.8406 -1.8775 26 1 6.1667 -2.4613 -1.4529 27 1 8.1621 -3.2581 0.4668 28 1 1.7265 -2.8329 -1.0430 29 1 2.5714 -3.1235 0.4964 30 1 0.8830 -2.5595 0.5003 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261247609.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:14:57 Heat of formation + Delta-G solvation = 33.374587 kcal Electronic energy + Delta-G solvation = -12087.838638 eV Core-core repulsion = 10076.559430 eV Total energy + Delta-G solvation = -2011.279208 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 193.116 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -40.44844 -34.30879 -32.11418 -31.43637 -29.64183 -25.68398 -25.27520 -24.55385 -21.18401 -19.34685 -18.00773 -15.90608 -15.63768 -14.75340 -14.39161 -13.57368 -12.95440 -12.82300 -12.45559 -12.19182 -12.00570 -11.76241 -11.30027 -11.24030 -10.99340 -10.81790 -10.68482 -10.34931 -10.05363 -9.59937 -8.88054 -8.35470 -7.74713 -6.84143 -5.99551 -4.03844 3.07874 3.33121 3.39286 3.44109 3.74421 3.98542 4.46988 5.29736 5.32446 5.44808 5.57350 5.63874 5.83793 5.88875 6.07237 6.27183 6.36360 6.58156 6.83985 7.01921 7.20664 7.23087 7.30974 7.61518 7.82857 8.02665 8.05880 8.20668 8.31489 8.54215 8.98952 9.60422 11.07390 Molecular weight = 193.12amu Principal moments of inertia in cm(-1) A = 0.054085 B = 0.010506 C = 0.009582 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 517.576018 B = 2664.614087 C = 2921.540279 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 C -0.030 4.030 3 C -0.200 4.200 4 C -0.209 4.209 5 C 0.073 3.927 6 C 0.103 3.897 7 H 0.028 0.972 8 C -0.128 4.128 9 C -0.500 4.500 10 H 0.063 0.937 11 C 0.059 3.941 12 N -0.895 5.895 13 Si 0.896 3.104 14 H -0.282 1.282 15 H -0.287 1.287 16 H -0.273 1.273 17 N -0.453 5.453 18 C 0.076 3.924 19 H 0.058 0.942 20 H 0.053 0.947 21 H 0.069 0.931 22 H 0.121 0.879 23 H 0.130 0.870 24 H 0.003 0.997 25 H 0.031 0.969 26 H 0.086 0.914 27 H 0.260 0.740 28 H 0.062 0.938 29 H 0.085 0.915 30 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.612 1.657 -1.106 9.817 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.139 4.139 3 C -0.226 4.226 4 C -0.232 4.232 5 C -0.039 4.039 6 C 0.083 3.917 7 H 0.046 0.954 8 C -0.186 4.186 9 C -0.539 4.539 10 H 0.081 0.919 11 C -0.142 4.142 12 N -0.534 5.534 13 Si 0.723 3.277 14 H -0.208 1.208 15 H -0.213 1.213 16 H -0.198 1.198 17 N -0.130 5.130 18 C -0.066 4.066 19 H 0.077 0.923 20 H 0.072 0.928 21 H 0.088 0.912 22 H 0.139 0.861 23 H 0.148 0.852 24 H 0.023 0.977 25 H 0.050 0.950 26 H 0.105 0.895 27 H 0.070 0.930 28 H 0.081 0.919 29 H 0.104 0.896 30 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -9.609 1.172 -1.131 9.746 hybrid contribution 0.758 0.342 0.545 0.994 sum -8.851 1.514 -0.586 8.999 Atomic orbital electron populations 1.20123 0.89516 1.01928 1.01327 1.20038 0.92560 0.86542 1.14746 1.20563 0.93557 0.96426 1.12031 1.20557 0.96026 0.93688 1.12928 1.21436 0.83843 0.95566 1.03007 1.17411 0.87296 0.92602 0.94351 0.95366 1.21741 1.00565 1.00473 0.95806 1.21145 0.97021 1.05713 1.29988 0.91865 1.24959 0.98460 0.94941 0.95837 1.69886 1.24820 1.14726 1.43965 0.86528 0.81188 0.79738 0.80200 1.20776 1.21272 1.19753 1.43903 1.06209 1.04940 1.57989 1.21823 1.00713 0.81812 1.02260 0.92275 0.92801 0.91181 0.86103 0.85235 0.97744 0.94989 0.89523 0.93014 0.91937 0.89645 0.91110 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.96 9.88 36.01 0.36 -0.60 16 2 C -0.03 -0.55 6.89 -81.79 -0.56 -1.11 16 3 C -0.20 -3.99 10.76 -39.78 -0.43 -4.42 16 4 C -0.21 -4.79 9.73 -39.78 -0.39 -5.18 16 5 C 0.07 1.71 5.81 -81.79 -0.48 1.23 16 6 C 0.10 2.65 2.49 -92.93 -0.23 2.41 16 7 H 0.03 0.77 6.92 -51.93 -0.36 0.41 16 8 C -0.13 -3.18 8.95 37.16 0.33 -2.85 16 9 C -0.50 -13.95 8.24 -34.44 -0.28 -14.24 16 10 H 0.06 1.77 6.81 -52.49 -0.36 1.42 16 11 C 0.06 1.63 5.30 -17.82 -0.09 1.53 16 12 N -0.89 -25.48 11.32 55.43 0.63 -24.86 16 13 Si 0.90 21.53 29.54 -169.99 -5.02 16.50 16 14 H -0.28 -6.73 7.11 56.52 0.40 -6.32 16 15 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 16 H -0.27 -6.50 7.11 56.52 0.40 -6.10 16 17 N -0.45 -9.13 3.15 -115.29 -0.36 -9.50 16 18 C 0.08 1.22 10.53 59.85 0.63 1.85 16 19 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 20 H 0.05 0.65 7.70 -51.93 -0.40 0.25 16 21 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 22 H 0.12 2.08 8.06 -52.49 -0.42 1.66 16 23 H 0.13 3.00 7.64 -52.49 -0.40 2.59 16 24 H 0.00 0.08 8.14 -51.93 -0.42 -0.34 16 25 H 0.03 0.78 8.14 -51.93 -0.42 0.36 16 26 H 0.09 2.32 6.07 -51.93 -0.32 2.00 16 27 H 0.26 7.06 8.31 -40.82 -0.34 6.72 16 28 H 0.06 0.91 8.14 -51.93 -0.42 0.48 16 29 H 0.08 1.43 6.94 -51.93 -0.36 1.07 16 30 H 0.07 0.91 7.63 -51.92 -0.40 0.52 16 LS Contribution 250.71 15.07 3.78 3.78 Total: -1.00 -30.05 250.71 -6.38 -36.43 By element: Atomic # 1 Polarization: 3.27 SS G_CDS: -4.26 Total: -0.99 kcal Atomic # 6 Polarization: -20.22 SS G_CDS: -1.15 Total: -21.37 kcal Atomic # 7 Polarization: -34.62 SS G_CDS: 0.26 Total: -34.35 kcal Atomic # 14 Polarization: 21.53 SS G_CDS: -5.02 Total: 16.50 kcal Total LS contribution 3.78 Total: 3.78 kcal Total: -30.05 -6.38 -36.43 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261247609.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.805 kcal (2) G-P(sol) polarization free energy of solvation -30.046 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 39.759 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.384 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.430 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.375 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds