Wall clock time and date at job start Mon Mar 30 2020 02:31:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30700 * 1 3 3 Si 1.86802 * 119.99961 * 2 1 4 4 H 1.48502 * 109.47567 * 89.99705 * 3 2 1 5 5 H 1.48496 * 109.47486 * 209.99957 * 3 2 1 6 6 H 1.48498 * 109.47063 * 329.99770 * 3 2 1 7 7 C 1.40074 * 120.00425 * 179.97438 * 2 1 3 8 8 H 1.07994 * 119.99839 * 10.49330 * 7 2 1 9 9 C 1.41496 * 120.00142 * 190.50185 * 7 2 1 10 10 N 1.32243 * 127.61972 * 7.97386 * 9 7 2 11 11 O 1.20905 * 111.74065 * 180.02562 * 10 9 7 12 12 C 1.33168 * 113.48851 * 0.02562 * 11 10 9 13 13 C 1.36797 * 106.85429 * 359.71392 * 12 11 10 14 14 C 1.46039 * 109.36754 * 179.72080 * 13 12 11 15 15 O 1.21642 * 124.90546 * 180.16686 * 14 13 12 16 16 N 1.34678 * 110.18430 * 0.46614 * 14 13 12 17 17 C 1.46894 * 107.94028 * 359.73260 * 16 14 13 18 18 H 0.97003 * 119.99580 * 174.83746 * 1 2 3 19 19 H 0.96997 * 126.03181 * 179.72930 * 16 14 13 20 20 H 1.08997 * 110.12170 * 240.82884 * 17 16 14 21 21 H 1.08998 * 110.12055 * 119.16147 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3070 0.0000 0.0000 3 14 2.2410 1.6178 0.0000 4 1 2.4885 2.0466 1.4001 5 1 3.5385 1.4403 -0.7000 6 1 1.4385 2.6527 -0.7001 7 6 2.0075 -1.2130 0.0005 8 1 1.4811 -2.1406 -0.1694 9 6 3.4046 -1.2231 0.2239 10 7 4.1712 -0.2090 0.5883 11 8 5.3292 -0.5393 0.6965 12 6 5.5420 -1.8255 0.4248 13 6 4.3280 -2.3696 0.1063 14 6 4.4996 -3.7851 -0.2094 15 8 3.6022 -4.5398 -0.5331 16 7 5.7939 -4.1356 -0.0841 17 6 6.5485 -2.9424 0.3214 18 1 -0.4850 -0.8367 -0.0756 19 1 6.1627 -5.0200 -0.2350 20 1 7.3006 -2.7011 -0.4297 21 1 7.0235 -3.1098 1.2881 RHF calculation, no. of doubly occupied orbitals= 34 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261248552.mol2 21 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:31:39 Heat of formation + Delta-G solvation = 13.959617 kcal Electronic energy + Delta-G solvation = -11782.442190 eV Core-core repulsion = 9433.228986 eV Total energy + Delta-G solvation = -2349.213204 eV No. of doubly occupied orbitals = 34 Molecular weight (most abundant/longest-lived isotopes) = 194.048 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -45.18298 -41.01219 -37.36371 -36.29869 -33.77574 -32.00393 -28.43947 -27.85299 -24.92174 -22.33656 -21.24203 -19.82464 -18.41480 -18.24109 -17.58651 -17.17129 -16.23534 -15.65819 -15.22749 -14.82007 -14.43761 -14.30999 -13.39910 -13.13425 -12.57809 -11.95049 -11.56273 -11.26841 -10.99113 -10.72324 -10.46381 -10.04500 -9.54653 -7.02626 0.27103 1.02539 1.33121 1.55174 1.67515 1.89771 2.14908 2.17302 2.24169 2.94763 3.56656 3.90255 4.21175 4.28758 4.49494 4.56494 4.81911 5.28400 5.57654 5.83581 5.94349 6.02609 6.49300 7.20612 7.80164 7.96830 Molecular weight = 194.05amu Principal moments of inertia in cm(-1) A = 0.051134 B = 0.014728 C = 0.011617 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 547.444511 B = 1900.626534 C = 2409.742150 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.825 5.825 2 C 0.020 3.980 3 Si 1.125 2.875 4 H -0.269 1.269 5 H -0.252 1.252 6 H -0.278 1.278 7 C -0.513 4.513 8 H 0.053 0.947 9 C 0.195 3.805 10 N -0.495 5.495 11 O 0.100 5.900 12 C -0.009 4.009 13 C -0.400 4.400 14 C 0.584 3.416 15 O -0.594 6.594 16 N -0.702 5.702 17 C 0.214 3.786 18 H 0.280 0.720 19 H 0.446 0.554 20 H 0.160 0.840 21 H 0.160 0.840 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.084 -2.659 0.967 16.331 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.450 5.450 2 C -0.196 4.196 3 Si 0.945 3.055 4 H -0.194 1.194 5 H -0.178 1.178 6 H -0.205 1.205 7 C -0.551 4.551 8 H 0.071 0.929 9 C 0.053 3.947 10 N -0.231 5.231 11 O 0.061 5.939 12 C -0.080 4.080 13 C -0.408 4.408 14 C 0.375 3.625 15 O -0.477 6.477 16 N -0.363 5.363 17 C 0.091 3.909 18 H 0.091 0.909 19 H 0.292 0.708 20 H 0.177 0.823 21 H 0.177 0.823 Dipole moment (debyes) X Y Z Total from point charges 15.253 -0.194 1.166 15.298 hybrid contribution -0.939 -3.151 -0.366 3.308 sum 14.313 -3.345 0.801 14.721 Atomic orbital electron populations 1.70575 1.08136 1.32652 1.33667 1.28460 0.95859 1.06856 0.88452 0.82797 0.74037 0.69097 0.79540 1.19395 1.17752 1.20515 1.19960 0.90943 0.96335 1.47831 0.92906 1.21050 0.94681 0.86519 0.92442 1.74132 0.89636 1.20595 1.38715 1.84113 1.22808 1.21011 1.65950 1.25886 0.99186 0.87519 0.95402 1.22716 0.96483 0.98055 1.23524 1.17097 0.83854 0.85597 0.75972 1.90719 1.46410 1.59179 1.51428 1.45741 1.05930 1.13660 1.70974 1.20348 0.88198 0.75542 1.06853 0.90888 0.70804 0.82304 0.82316 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.83 -48.34 13.65 21.84 0.30 -48.04 14 2 C 0.02 1.19 5.52 85.31 0.47 1.66 14 3 Si 1.12 54.06 26.50 68.60 1.82 55.87 14 4 H -0.27 -12.53 7.11 99.48 0.71 -11.83 14 5 H -0.25 -11.99 6.21 99.48 0.62 -11.37 14 6 H -0.28 -12.42 7.11 99.48 0.71 -11.71 14 7 C -0.51 -31.64 9.89 23.52 0.23 -31.41 14 8 H 0.05 3.53 8.06 -2.91 -0.02 3.51 14 9 C 0.20 10.92 6.68 42.38 0.28 11.20 14 10 N -0.49 -25.06 7.50 -48.33 -0.36 -25.42 14 11 O 0.10 4.14 11.03 79.54 0.88 5.02 14 12 C -0.01 -0.32 8.67 25.35 0.22 -0.10 14 13 C -0.40 -18.93 7.44 -19.10 -0.14 -19.08 14 14 C 0.58 24.91 8.30 86.28 0.72 25.63 14 15 O -0.59 -31.19 18.05 -4.16 -0.08 -31.27 14 16 N -0.70 -17.35 6.48 -470.80 -3.05 -20.41 14 17 C 0.21 3.84 7.76 85.56 0.66 4.51 14 18 H 0.28 16.28 8.73 -92.71 -0.81 15.47 14 19 H 0.45 7.44 8.96 -92.71 -0.83 6.61 14 20 H 0.16 1.44 8.14 -2.39 -0.02 1.42 14 21 H 0.16 1.44 8.14 -2.39 -0.02 1.42 14 Total: -1.00 -80.58 199.93 2.28 -78.31 By element: Atomic # 1 Polarization: -6.80 SS G_CDS: 0.33 Total: -6.48 kcal Atomic # 6 Polarization: -10.03 SS G_CDS: 2.44 Total: -7.59 kcal Atomic # 7 Polarization: -90.75 SS G_CDS: -3.12 Total: -93.87 kcal Atomic # 8 Polarization: -27.05 SS G_CDS: 0.80 Total: -26.25 kcal Atomic # 14 Polarization: 54.06 SS G_CDS: 1.82 Total: 55.87 kcal Total: -80.58 2.28 -78.31 kcal The number of atoms in the molecule is 21 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261248552.mol2 21 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 92.265 kcal (2) G-P(sol) polarization free energy of solvation -80.583 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.682 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.278 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.306 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.960 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds