Wall clock time and date at job start Mon Mar 30 2020 02:31:06
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
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* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
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Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.13606 * 1
3 3 C 1.47201 * 179.97438 * 2 1
4 4 C 1.50697 * 109.46987 * 121.47944 * 3 2 1
5 5 C 1.34865 * 125.38159 * 90.00016 * 4 3 2
6 6 N 1.30449 * 115.79375 * 179.97438 * 5 4 3
7 7 C 1.31867 * 115.69100 * 0.02562 * 6 5 4
8 8 C 1.39916 * 125.55494 * 179.97438 * 7 6 5
9 9 H 1.08001 * 119.99683 * 174.24691 * 8 7 6
10 10 C 1.40246 * 119.99936 * 354.52228 * 8 7 6
11 11 N 1.30700 * 119.99727 * 5.77617 * 10 8 7
12 12 Si 1.86801 * 119.99811 * 185.77235 * 10 8 7
13 13 H 1.48499 * 109.46997 * 94.98298 * 12 10 8
14 14 H 1.48500 * 109.47094 * 214.98008 * 12 10 8
15 15 H 1.48498 * 109.47157 * 334.98291 * 12 10 8
16 16 S 1.71040 * 125.38366 * 270.26924 * 4 3 2
17 17 H 1.09003 * 109.46920 * 1.48047 * 3 2 1
18 18 H 1.09004 * 109.46932 * 241.48034 * 3 2 1
19 19 H 1.07997 * 122.09941 * 0.02562 * 5 4 3
20 20 H 0.97004 * 119.99160 * 180.02562 * 11 10 8
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.1361 0.0000 0.0000
3 6 2.6081 0.0007 0.0000
4 6 3.1100 0.7428 -1.2117
5 6 3.3697 2.0651 -1.2654
6 7 3.7987 2.5132 -2.4129
7 6 3.9210 1.6129 -3.3686
8 6 4.3606 1.8652 -4.6728
9 1 4.5157 1.0454 -5.3584
10 6 4.6053 3.1824 -5.0877
11 7 4.5324 4.1630 -4.2267
12 14 5.0357 3.5351 -6.8709
13 1 3.8041 3.9057 -7.6133
14 1 6.0074 4.6563 -6.9332
15 1 5.6375 2.3238 -7.4838
16 16 3.4343 0.0425 -2.7381
17 1 2.9718 -1.0265 -0.0266
18 1 2.9712 0.4915 0.9030
19 1 3.2320 2.7122 -0.4118
20 1 4.7013 5.0740 -4.5138
RHF calculation, no. of doubly occupied orbitals= 31
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990)
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000306148314.mol2 20
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 02:31:06
Heat of formation + Delta-G solvation = 29.342524 kcal
Electronic energy + Delta-G solvation = -9247.591296 eV
Core-core repulsion = 7341.798016 eV
Total energy + Delta-G solvation = -1905.793280 eV
No. of doubly occupied orbitals = 31
Molecular weight
(most abundant/longest-lived isotopes) = 194.021 amu
Computer time = 0.13 seconds
Orbital eigenvalues (eV)
-39.50214 -37.58671 -35.70772 -33.10516 -30.18977 -26.46437 -24.35188 -21.34274
-18.94782 -18.27599 -17.72216 -16.77004 -15.72075 -15.11293 -14.67523 -14.49497
-14.41750 -13.66313 -13.39029 -13.00121 -12.84590 -12.58397 -12.37667 -11.89123
-11.46945 -11.28948 -9.65740 -9.61360 -9.40094 -8.60161 -6.61649 0.54824
1.28920 1.45834 1.52245 1.61823 1.77439 1.89189 1.92474 2.19476
2.52024 3.23295 3.45395 4.37365 4.54963 4.62662 4.88286 4.98232
5.32235 5.68270 6.03699 6.29419 6.58881 6.69050 7.99049 8.21679
Molecular weight = 194.02amu
Principal moments of inertia in cm(-1)
A = 0.076202 B = 0.009715 C = 0.009339
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 367.357450 B = 2881.310440 C = 2997.467063
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.511 5.511
2 C 0.241 3.759
3 C 0.091 3.909
4 C -0.400 4.400
5 C 0.096 3.904
6 N -0.579 5.579
7 C 0.197 3.803
8 C -0.404 4.404
9 H 0.109 0.891
10 C 0.025 3.975
11 N -0.741 5.741
12 Si 1.003 2.997
13 H -0.263 1.263
14 H -0.263 1.263
15 H -0.245 1.245
16 S -0.076 6.076
17 H 0.128 0.872
18 H 0.146 0.854
19 H 0.153 0.847
20 H 0.293 0.707
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 3.189 -3.047 0.352 4.424
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.190 5.190
2 C -0.075 4.075
3 C 0.049 3.951
4 C -0.525 4.525
5 C -0.065 4.065
6 N -0.299 5.299
7 C -0.052 4.052
8 C -0.446 4.446
9 H 0.127 0.873
10 C -0.202 4.202
11 N -0.363 5.363
12 Si 0.821 3.179
13 H -0.187 1.187
14 H -0.187 1.187
15 H -0.168 1.168
16 S 0.180 5.820
17 H 0.146 0.854
18 H 0.163 0.837
19 H 0.170 0.830
20 H 0.103 0.897
Dipole moment (debyes) X Y Z Total
from point charges 1.560 -3.339 -0.059 3.686
hybrid contribution 0.264 0.919 0.219 0.981
sum 1.823 -2.419 0.160 3.034
Atomic orbital electron populations
1.81103 1.14856 1.11597 1.11439 1.30225 0.96056 0.90700 0.90544
1.17367 0.78461 1.03014 0.96259 1.23627 1.30848 0.97925 1.00131
1.21926 0.95732 0.92531 0.96283 1.67708 1.29306 1.32437 1.00446
1.24571 0.95945 0.87274 0.97426 1.19636 1.35214 0.95368 0.94411
0.87327 1.27217 0.93215 0.94660 1.05094 1.70076 1.26588 1.01668
1.37952 0.84869 0.79127 0.79763 0.74126 1.18747 1.18714 1.16838
1.82938 1.71456 1.19337 1.08219 0.85410 0.83673 0.82968 0.89653
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.51 -20.19 18.54 20.01 0.37 -19.82 14
2 C 0.24 8.24 15.42 89.44 1.38 9.62 14
3 C 0.09 2.58 6.19 28.04 0.17 2.75 14
4 C -0.40 -16.15 5.59 24.91 0.14 -16.01 14
5 C 0.10 4.40 11.15 84.12 0.94 5.34 14
6 N -0.58 -31.28 8.78 -195.56 -1.72 -33.00 14
7 C 0.20 10.35 7.07 85.09 0.60 10.96 14
8 C -0.40 -20.19 9.39 23.16 0.22 -19.98 14
9 H 0.11 4.94 7.86 -2.91 -0.02 4.91 14
10 C 0.03 1.18 5.49 85.35 0.47 1.65 14
11 N -0.74 -37.55 11.90 21.88 0.26 -37.29 14
12 Si 1.00 34.15 29.57 68.60 2.03 36.18 14
13 H -0.26 -8.79 7.11 99.48 0.71 -8.08 14
14 H -0.26 -8.50 7.11 99.48 0.71 -7.80 14
15 H -0.25 -7.84 7.11 99.48 0.71 -7.13 14
16 S -0.08 -3.36 23.14 -56.49 -1.31 -4.67 14
17 H 0.13 2.95 8.14 -2.39 -0.02 2.93 14
18 H 0.15 3.04 8.14 -2.39 -0.02 3.02 14
19 H 0.15 6.10 8.06 -2.91 -0.02 6.08 14
20 H 0.29 13.14 8.29 -92.71 -0.77 12.38 14
Total: -1.00 -62.77 214.03 4.82 -57.95
By element:
Atomic # 1 Polarization: 5.05 SS G_CDS: 1.27 Total: 6.31 kcal
Atomic # 6 Polarization: -9.59 SS G_CDS: 3.92 Total: -5.67 kcal
Atomic # 7 Polarization: -89.01 SS G_CDS: -1.09 Total: -90.10 kcal
Atomic # 14 Polarization: 34.15 SS G_CDS: 2.03 Total: 36.18 kcal
Atomic # 16 Polarization: -3.36 SS G_CDS: -1.31 Total: -4.67 kcal
Total: -62.77 4.82 -57.95 kcal
The number of atoms in the molecule is 20
The average number of expansion shells was 14.00
The maximum number of expansion shells was 14
The minimum number of expansion shells was 14
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000306148314.mol2 20
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 87.290 kcal
(2) G-P(sol) polarization free energy of solvation -62.766 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.523 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.819 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.947 kcal
(6) G-S(sol) free energy of system = (1) + (5) 29.343 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.13 seconds