Wall clock time and date at job start Mon Mar 30 2020 02:35:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30817 * 1 3 3 Si 1.86806 * 119.99862 * 2 1 4 4 H 1.48500 * 109.47234 * 240.00291 * 3 2 1 5 5 H 1.48501 * 109.47006 * 0.02562 * 3 2 1 6 6 H 1.48500 * 109.47187 * 119.99950 * 3 2 1 7 7 C 1.39942 * 120.00093 * 180.02562 * 2 1 3 8 8 H 1.08005 * 119.99885 * 197.84137 * 7 2 1 9 9 C 1.41397 * 120.00123 * 17.84704 * 7 2 1 10 10 C 1.40716 * 120.24152 * 204.38345 * 9 7 2 11 11 C 1.37614 * 119.74235 * 180.02562 * 10 9 7 12 12 C 1.38635 * 120.25176 * 0.02562 * 11 10 9 13 13 C 1.50701 * 119.75478 * 179.97438 * 12 11 10 14 14 S 1.81392 * 109.47230 * 89.99723 * 13 12 11 15 15 C 1.38633 * 120.49805 * 0.25479 * 12 11 10 16 16 C 1.37626 * 120.24702 * 359.44583 * 15 12 11 17 17 H 0.97003 * 120.00574 * 359.97438 * 1 2 3 18 18 H 1.08002 * 120.12818 * 359.97438 * 10 9 7 19 19 H 1.08004 * 119.87534 * 180.02562 * 11 10 9 20 20 H 1.09004 * 109.46466 * 330.00011 * 13 12 11 21 21 H 1.08997 * 109.46858 * 210.00305 * 13 12 11 22 22 H 1.34507 * 103.00069 * 180.02562 * 14 13 12 23 23 H 1.07996 * 119.87943 * 179.70638 * 15 12 11 24 24 H 1.07997 * 120.12451 * 180.27375 * 16 15 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3082 0.0000 0.0000 3 14 2.2422 1.6178 0.0000 4 1 3.0959 1.6965 -1.2125 5 1 1.2771 2.7465 0.0006 6 1 3.0959 1.6965 1.2125 7 6 2.0079 -1.2119 -0.0005 8 1 3.0490 -1.2345 0.2860 9 6 1.3520 -2.4068 -0.3764 10 6 1.8259 -3.6499 0.0824 11 6 1.1799 -4.8065 -0.2902 12 6 0.0668 -4.7502 -1.1146 13 6 -0.6316 -6.0239 -1.5161 14 16 -1.9231 -6.4135 -0.3034 15 6 -0.4053 -3.5316 -1.5772 16 6 0.2212 -2.3618 -1.2124 17 1 -0.4851 0.8400 0.0004 18 1 2.6936 -3.6961 0.7237 19 1 1.5416 -5.7617 0.0610 20 1 0.0913 -6.8389 -1.5516 21 1 -1.0835 -5.8958 -2.4997 22 1 -2.4525 -7.5540 -0.7810 23 1 -1.2705 -3.4998 -2.2228 24 1 -0.1509 -1.4132 -1.5703 RHF calculation, no. of doubly occupied orbitals= 32 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000306836723.mol2 24 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:35:48 Heat of formation + Delta-G solvation = -7.769906 kcal Electronic energy + Delta-G solvation = -9655.430641 eV Core-core repulsion = 7851.568388 eV Total energy + Delta-G solvation = -1803.862253 eV No. of doubly occupied orbitals = 32 Molecular weight (most abundant/longest-lived isotopes) = 194.046 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -39.44143 -35.82533 -32.98275 -31.15998 -29.27472 -25.73856 -22.87718 -21.93505 -19.20732 -18.34471 -17.14464 -15.99976 -15.65297 -15.63153 -15.14380 -14.27845 -13.82228 -13.72309 -13.31179 -12.88400 -12.72059 -12.33830 -12.18821 -11.52538 -11.31127 -11.22633 -10.95485 -9.35171 -9.18076 -8.96558 -8.63463 -6.32194 0.42870 1.17249 1.25211 1.40859 1.52386 1.62653 1.98965 2.22334 2.78352 3.77828 4.16715 4.18462 4.56332 4.63720 4.69608 5.07801 5.16533 5.37961 5.46588 5.72094 5.96094 6.11514 6.21637 6.39150 6.70847 6.94271 7.04012 8.32687 Molecular weight = 194.05amu Principal moments of inertia in cm(-1) A = 0.078429 B = 0.008789 C = 0.008348 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 356.923815 B = 3185.155817 C = 3353.180226 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.820 5.820 2 C 0.034 3.966 3 Si 0.984 3.016 4 H -0.259 1.259 5 H -0.268 1.268 6 H -0.259 1.259 7 C -0.497 4.497 8 H 0.078 0.922 9 C 0.085 3.915 10 C -0.245 4.245 11 C -0.068 4.068 12 C -0.205 4.205 13 C 0.022 3.978 14 S -0.302 6.302 15 C -0.082 4.082 16 C -0.194 4.194 17 H 0.289 0.711 18 H 0.099 0.901 19 H 0.120 0.880 20 H 0.097 0.903 21 H 0.092 0.908 22 H 0.089 0.911 23 H 0.108 0.892 24 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.045 -4.520 -2.831 5.334 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.446 5.446 2 C -0.181 4.181 3 Si 0.804 3.196 4 H -0.184 1.184 5 H -0.192 1.192 6 H -0.183 1.183 7 C -0.526 4.526 8 H 0.096 0.904 9 C 0.082 3.918 10 C -0.265 4.265 11 C -0.087 4.087 12 C -0.208 4.208 13 C -0.125 4.125 14 S -0.149 6.149 15 C -0.102 4.102 16 C -0.214 4.214 17 H 0.100 0.900 18 H 0.118 0.882 19 H 0.138 0.862 20 H 0.116 0.884 21 H 0.110 0.890 22 H 0.052 0.948 23 H 0.127 0.873 24 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges -0.779 -4.447 -2.136 4.994 hybrid contribution 0.440 0.110 -0.845 0.959 sum -0.339 -4.337 -2.981 5.273 Atomic orbital electron populations 1.69877 1.09081 1.30786 1.34814 1.26803 0.95487 1.04647 0.91189 0.85233 0.78771 0.75490 0.80109 1.18379 1.19220 1.18346 1.19898 0.98498 0.92568 1.41629 0.90381 1.18016 0.91732 0.93151 0.88885 1.21173 1.04703 0.93033 1.07608 1.20721 0.94865 0.97237 0.95923 1.18751 1.00556 0.92658 1.08866 1.21745 0.95460 0.98381 0.96935 1.88180 1.48777 1.34524 1.43378 1.20789 0.98065 0.92330 0.99009 1.21273 1.00504 0.97066 1.02549 0.89992 0.88241 0.86177 0.88435 0.88959 0.94776 0.87346 0.88027 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -42.97 10.95 21.82 0.24 -42.73 14 2 C 0.03 1.73 5.14 85.26 0.44 2.17 14 3 Si 0.98 37.81 29.60 68.60 2.03 39.84 14 4 H -0.26 -9.73 7.11 99.48 0.71 -9.02 14 5 H -0.27 -9.74 7.11 99.48 0.71 -9.04 14 6 H -0.26 -9.64 7.11 99.48 0.71 -8.94 14 7 C -0.50 -26.71 9.05 23.46 0.21 -26.49 14 8 H 0.08 4.02 7.91 -2.91 -0.02 4.00 14 9 C 0.09 4.60 5.57 -21.29 -0.12 4.48 14 10 C -0.25 -11.97 9.80 22.73 0.22 -11.74 14 11 C -0.07 -2.89 9.67 22.22 0.21 -2.67 14 12 C -0.21 -8.44 5.16 -19.67 -0.10 -8.54 14 13 C 0.02 0.69 6.42 71.24 0.46 1.14 14 14 S -0.30 -10.00 25.86 -56.49 -1.46 -11.46 14 15 C -0.08 -3.73 9.67 22.22 0.21 -3.52 14 16 C -0.19 -10.20 8.70 22.73 0.20 -10.00 14 17 H 0.29 13.70 8.30 -92.71 -0.77 12.93 14 18 H 0.10 4.58 8.06 -2.91 -0.02 4.55 14 19 H 0.12 4.34 8.06 -2.91 -0.02 4.32 14 20 H 0.10 2.63 8.08 -2.39 -0.02 2.61 14 21 H 0.09 2.59 8.08 -2.39 -0.02 2.57 14 22 H 0.09 2.40 9.07 73.35 0.67 3.06 14 23 H 0.11 4.42 8.06 -2.91 -0.02 4.39 14 24 H 0.10 5.58 6.16 -2.91 -0.02 5.57 14 Total: -1.00 -56.93 228.68 4.41 -52.51 By element: Atomic # 1 Polarization: 15.15 SS G_CDS: 1.87 Total: 17.02 kcal Atomic # 6 Polarization: -56.92 SS G_CDS: 1.74 Total: -55.18 kcal Atomic # 7 Polarization: -42.97 SS G_CDS: 0.24 Total: -42.73 kcal Atomic # 14 Polarization: 37.81 SS G_CDS: 2.03 Total: 39.84 kcal Atomic # 16 Polarization: -10.00 SS G_CDS: -1.46 Total: -11.46 kcal Total: -56.93 4.41 -52.51 kcal The number of atoms in the molecule is 24 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306836723.mol2 24 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.745 kcal (2) G-P(sol) polarization free energy of solvation -56.928 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.183 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.413 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -52.515 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.770 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds