Wall clock time and date at job start Mon Mar 30 2020 02:08:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46496 * 1 3 3 C 1.46504 * 120.00368 * 2 1 4 4 C 1.38650 * 120.00145 * 180.02562 * 2 1 3 5 5 C 1.40036 * 120.74520 * 179.71849 * 4 2 1 6 6 C 1.36301 * 119.18692 * 179.78581 * 5 4 2 7 7 N 1.33627 * 120.74801 * 0.49634 * 6 5 4 8 8 C 1.34424 * 119.19570 * 179.71141 * 7 6 5 9 9 H 1.07997 * 119.99642 * 30.18302 * 8 7 6 10 10 C 1.39895 * 120.00268 * 210.18331 * 8 7 6 11 11 N 1.30896 * 119.99996 * 18.17843 * 10 8 7 12 12 Si 1.86803 * 120.00108 * 198.18037 * 10 8 7 13 13 H 1.48503 * 109.47098 * 359.97438 * 12 10 8 14 14 H 1.48500 * 109.47092 * 119.99901 * 12 10 8 15 15 H 1.48498 * 109.46961 * 240.00232 * 12 10 8 16 16 C 1.33639 * 121.61896 * 359.73013 * 7 6 5 17 17 C 1.36305 * 120.73719 * 0.02760 * 16 7 6 18 18 H 1.09001 * 109.47247 * 270.00195 * 1 2 3 19 19 H 1.09006 * 109.47203 * 29.99873 * 1 2 3 20 20 H 1.08999 * 109.47231 * 150.00128 * 1 2 3 21 21 H 1.09008 * 109.46754 * 270.00547 * 3 2 1 22 22 H 1.09000 * 109.46749 * 29.99900 * 3 2 1 23 23 H 1.08991 * 109.47377 * 150.00219 * 3 2 1 24 24 H 1.07999 * 120.40064 * 0.02562 * 5 4 2 25 25 H 1.08003 * 119.62522 * 180.22941 * 6 5 4 26 26 H 0.96994 * 120.00327 * 179.97438 * 11 10 8 27 27 H 1.08000 * 119.63519 * 179.97438 * 16 7 6 28 28 H 1.08002 * 120.40139 * 179.97438 * 17 16 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1976 1.2687 0.0000 4 6 2.1582 -1.2007 -0.0005 5 6 3.5585 -1.2189 -0.0065 6 6 4.2077 -2.4174 -0.0024 7 7 3.5233 -3.5651 -0.0028 8 6 4.1954 -4.7293 -0.0046 9 1 5.1660 -4.7931 0.4646 10 6 3.6375 -5.8581 -0.6142 11 7 2.6604 -5.7217 -1.4745 12 14 4.2869 -7.5600 -0.2004 13 1 5.3851 -7.4430 0.7923 14 1 3.1900 -8.3834 0.3689 15 1 4.8023 -8.2065 -1.4340 16 6 2.1870 -3.5840 -0.0018 17 6 1.4739 -2.4224 -0.0009 18 1 -0.3634 0.0000 1.0277 19 1 -0.3634 0.8900 -0.5138 20 1 -0.3633 -0.8900 -0.5138 21 1 2.3791 1.5834 -1.0278 22 1 1.6085 2.0284 0.5138 23 1 3.1499 1.1384 0.5137 24 1 4.1170 -0.2946 -0.0103 25 1 5.2875 -2.4396 -0.0031 26 1 2.2739 -6.5043 -1.8975 27 1 1.6664 -4.5302 -0.0026 28 1 0.3941 -2.4440 -0.0006 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000307156827.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:08:22 Heat of formation + Delta-G solvation = 115.321074 kcal Electronic energy + Delta-G solvation = -11896.126571 eV Core-core repulsion = 9836.630658 eV Total energy + Delta-G solvation = -2059.495913 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 193.104 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -42.68330 -38.97725 -35.79933 -33.61379 -32.72298 -29.25880 -28.49179 -26.21016 -24.73126 -22.78713 -21.21362 -18.55052 -18.07141 -17.52975 -16.80641 -16.37246 -15.99803 -15.60197 -15.45906 -14.99177 -14.13176 -13.66352 -13.41970 -13.30305 -13.16024 -13.08047 -12.95214 -12.24671 -12.20191 -12.05766 -11.21331 -10.49958 -9.37233 -9.06685 -6.99628 -0.09418 0.10680 1.29482 1.38267 1.54512 1.89471 2.04113 2.15116 2.36104 2.69021 3.67419 3.76702 4.05096 4.10638 4.21079 4.41703 4.48694 4.62445 4.72037 4.74563 4.81007 4.86962 4.89560 4.96880 5.08633 5.33158 5.88320 6.08938 6.20101 6.37337 6.49340 7.70335 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.078 3.922 2 N -0.619 5.619 3 C 0.078 3.922 4 C 0.219 3.781 5 C -0.188 4.188 6 C 0.055 3.945 7 N -0.185 5.185 8 C -0.381 4.381 9 H 0.155 0.845 10 C 0.041 3.959 11 N -0.814 5.814 12 Si 0.996 3.004 13 H -0.246 1.246 14 H -0.269 1.269 15 H -0.278 1.278 16 C 0.086 3.914 17 C -0.195 4.195 18 H 0.062 0.938 19 H 0.086 0.914 20 H 0.074 0.926 21 H 0.060 0.940 22 H 0.085 0.915 23 H 0.083 0.917 24 H 0.178 0.822 25 H 0.197 0.803 26 H 0.310 0.690 27 H 0.168 0.832 28 H 0.164 0.836 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.099 8.328 2.744 8.837 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 N -0.326 5.326 3 C -0.064 4.064 4 C 0.105 3.895 5 C -0.211 4.211 6 C -0.083 4.083 7 N 0.164 4.836 8 C -0.512 4.512 9 H 0.173 0.827 10 C -0.178 4.178 11 N -0.440 5.440 12 Si 0.817 3.183 13 H -0.169 1.169 14 H -0.194 1.194 15 H -0.203 1.203 16 C -0.053 4.053 17 C -0.218 4.218 18 H 0.081 0.919 19 H 0.104 0.896 20 H 0.092 0.908 21 H 0.078 0.922 22 H 0.104 0.896 23 H 0.102 0.898 24 H 0.195 0.805 25 H 0.214 0.786 26 H 0.122 0.878 27 H 0.185 0.815 28 H 0.182 0.818 Dipole moment (debyes) X Y Z Total from point charges -1.293 8.285 2.575 8.772 hybrid contribution -0.050 -0.899 -0.232 0.930 sum -1.343 7.386 2.343 7.864 Atomic orbital electron populations 1.21955 0.77794 1.04144 1.02541 1.46451 1.06477 1.03274 1.76433 1.21989 0.98023 0.83826 1.02540 1.18442 0.91886 0.86820 0.92380 1.21062 0.92288 0.99076 1.08712 1.22527 1.00867 0.84118 1.00828 1.38304 1.05739 1.07621 1.31973 1.20917 1.07002 0.85108 1.38185 0.82734 1.26541 0.94969 1.04771 0.91496 1.69553 1.21150 1.36127 1.17171 0.84745 0.79596 0.74692 0.79313 1.16892 1.19415 1.20296 1.22085 0.83689 1.01264 0.98218 1.20975 1.02051 0.89347 1.09471 0.91940 0.89554 0.90765 0.92190 0.89614 0.89836 0.80451 0.78637 0.87806 0.81507 0.81836 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 -0.63 10.21 127.77 1.30 0.68 15 2 N -0.62 3.29 3.38 -746.01 -2.52 0.77 15 3 C 0.08 -0.75 10.20 127.77 1.30 0.55 15 4 C 0.22 -0.43 6.59 38.94 0.26 -0.18 15 5 C -0.19 0.74 9.20 22.25 0.20 0.95 15 6 C 0.05 -0.06 10.16 83.97 0.85 0.79 15 7 N -0.18 -0.98 2.59 -354.52 -0.92 -1.89 15 8 C -0.38 -3.12 9.26 84.70 0.78 -2.34 15 9 H 0.16 0.71 7.91 -2.91 -0.02 0.69 15 10 C 0.04 0.44 4.92 85.23 0.42 0.86 15 11 N -0.81 -11.06 11.25 21.82 0.25 -10.82 15 12 Si 1.00 7.31 29.60 68.60 2.03 9.34 15 13 H -0.25 -1.57 7.11 99.48 0.71 -0.87 15 14 H -0.27 -2.38 7.11 99.48 0.71 -1.67 15 15 H -0.28 -2.76 7.11 99.48 0.71 -2.06 15 16 C 0.09 0.44 8.94 83.97 0.75 1.19 15 17 C -0.19 -0.05 9.20 22.25 0.20 0.16 15 18 H 0.06 -0.55 8.14 -2.39 -0.02 -0.57 15 19 H 0.09 -0.89 8.07 -2.38 -0.02 -0.91 15 20 H 0.07 -0.59 6.24 -2.39 -0.01 -0.60 15 21 H 0.06 -0.58 8.14 -2.38 -0.02 -0.60 15 22 H 0.09 -0.99 8.07 -2.39 -0.02 -1.01 15 23 H 0.08 -0.97 6.25 -2.39 -0.01 -0.98 15 24 H 0.18 -1.76 6.27 -2.91 -0.02 -1.78 15 25 H 0.20 -1.31 8.01 -2.91 -0.02 -1.33 15 26 H 0.31 3.77 8.30 -92.71 -0.77 3.00 15 27 H 0.17 1.28 6.16 -2.91 -0.02 1.26 15 28 H 0.16 -0.60 6.26 -2.91 -0.02 -0.62 15 Total: 0.00 -14.04 234.64 6.06 -7.98 By element: Atomic # 1 Polarization: -9.19 SS G_CDS: 1.14 Total: -8.05 kcal Atomic # 6 Polarization: -3.41 SS G_CDS: 6.08 Total: 2.67 kcal Atomic # 7 Polarization: -8.75 SS G_CDS: -3.19 Total: -11.95 kcal Atomic # 14 Polarization: 7.31 SS G_CDS: 2.03 Total: 9.34 kcal Total: -14.04 6.06 -7.98 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307156827.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 123.302 kcal (2) G-P(sol) polarization free energy of solvation -14.043 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 109.260 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.062 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -7.981 kcal (6) G-S(sol) free energy of system = (1) + (5) 115.321 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds