Wall clock time and date at job start Mon Mar 30 2020 02:45:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31522 * 1 3 3 Si 1.86803 * 119.99776 * 2 1 4 4 H 1.48500 * 109.47229 * 270.00614 * 3 2 1 5 5 H 1.48500 * 109.46876 * 30.00454 * 3 2 1 6 6 H 1.48493 * 109.46859 * 150.00112 * 3 2 1 7 7 C 1.37874 * 119.99835 * 180.02562 * 2 1 3 8 8 H 1.08003 * 119.99767 * 179.97438 * 7 2 1 9 9 C 1.50699 * 120.00270 * 359.97438 * 7 2 1 10 10 C 1.50706 * 109.46817 * 180.02562 * 9 7 2 11 11 C 1.38171 * 119.94628 * 269.72017 * 10 9 7 12 12 C 1.38774 * 120.05705 * 179.76803 * 11 10 9 13 13 O 1.35894 * 120.02991 * 180.23307 * 12 11 10 14 14 C 1.38638 * 119.94143 * 0.53552 * 12 11 10 15 15 C 1.38635 * 119.89163 * 359.72181 * 14 12 11 16 16 O 1.35895 * 120.03043 * 179.97438 * 15 14 12 17 17 C 1.38182 * 119.94372 * 90.00092 * 10 9 7 18 18 H 0.96992 * 120.00038 * 359.97438 * 1 2 3 19 19 H 1.09000 * 109.46670 * 60.00337 * 9 7 2 20 20 H 1.09000 * 109.47247 * 300.00051 * 9 7 2 21 21 H 1.08008 * 119.97071 * 0.02562 * 11 10 9 22 22 H 0.96696 * 114.00310 * 270.29874 * 13 12 11 23 23 H 1.08000 * 120.05567 * 179.70209 * 14 12 11 24 24 H 0.96695 * 114.00002 * 270.02408 * 16 15 14 25 25 H 1.07997 * 119.97091 * 359.97438 * 17 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.4965 2.0466 -1.4001 5 1 1.4466 2.6526 0.7001 6 1 3.5467 1.4402 0.7000 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0010 9 6 1.2511 -2.4991 -0.0005 10 6 2.2305 -3.6446 -0.0005 11 6 2.6743 -4.1726 -1.1978 12 6 3.5799 -5.2242 -1.2005 13 8 4.0196 -5.7399 -2.3783 14 6 4.0307 -5.7522 -0.0005 15 6 3.5798 -5.2242 1.1995 16 8 4.0195 -5.7399 2.3774 17 6 2.6787 -4.1688 1.1968 18 1 -0.4850 0.8400 0.0004 19 1 0.6242 -2.5567 -0.8903 20 1 0.6248 -2.5571 0.8897 21 1 2.3193 -3.7638 -2.1323 22 1 3.4749 -6.4626 -2.7190 23 1 4.7317 -6.5737 -0.0004 24 1 3.4749 -6.4628 2.7179 25 1 2.3272 -3.7571 2.1313 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000307306719.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:45:06 Heat of formation + Delta-G solvation = -75.068512 kcal Electronic energy + Delta-G solvation = -11479.946662 eV Core-core repulsion = 9230.413252 eV Total energy + Delta-G solvation = -2249.533410 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 194.073 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -39.54853 -37.45995 -35.81388 -33.07658 -30.80616 -28.77372 -27.12631 -23.45207 -22.06140 -20.76892 -18.02297 -16.79341 -16.37480 -15.77804 -15.66237 -14.94922 -14.48058 -13.83777 -12.64786 -12.45818 -12.30841 -11.76934 -11.33347 -11.11818 -10.81751 -10.62793 -10.38044 -10.30126 -9.61172 -9.45936 -8.46228 -8.07070 -7.97450 -6.08739 -4.12731 1.68436 1.82130 3.29924 3.35892 3.41116 3.97995 4.36963 4.49563 4.74414 5.26866 5.41155 5.68278 5.81361 6.10489 6.20473 6.47181 6.80968 6.89346 7.00020 7.22761 7.46460 7.67513 7.87242 7.87707 8.02988 8.25187 8.92324 9.51668 11.01323 Molecular weight = 194.07amu Principal moments of inertia in cm(-1) A = 0.042272 B = 0.009510 C = 0.008730 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 662.220435 B = 2943.666808 C = 3206.381240 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.894 5.894 2 C 0.059 3.941 3 Si 0.897 3.103 4 H -0.279 1.279 5 H -0.285 1.285 6 H -0.272 1.272 7 C -0.514 4.514 8 H 0.058 0.942 9 C 0.048 3.952 10 C -0.004 4.004 11 C -0.154 4.154 12 C 0.112 3.888 13 O -0.501 6.501 14 C -0.199 4.199 15 C 0.112 3.888 16 O -0.501 6.501 17 C -0.154 4.154 18 H 0.263 0.737 19 H 0.032 0.968 20 H 0.032 0.968 21 H 0.128 0.872 22 H 0.384 0.616 23 H 0.123 0.877 24 H 0.384 0.616 25 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.327 -11.073 0.003 11.562 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.533 5.533 2 C -0.142 4.142 3 Si 0.724 3.276 4 H -0.205 1.205 5 H -0.211 1.211 6 H -0.197 1.197 7 C -0.553 4.553 8 H 0.077 0.923 9 C 0.011 3.989 10 C -0.004 4.004 11 C -0.173 4.173 12 C 0.068 3.932 13 O -0.310 6.310 14 C -0.218 4.218 15 C 0.068 3.932 16 O -0.310 6.310 17 C -0.173 4.173 18 H 0.072 0.928 19 H 0.050 0.950 20 H 0.050 0.950 21 H 0.146 0.854 22 H 0.238 0.762 23 H 0.141 0.859 24 H 0.238 0.762 25 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges 4.066 -10.102 0.008 10.890 hybrid contribution -0.199 0.213 -0.011 0.292 sum 3.866 -9.889 -0.003 10.618 Atomic orbital electron populations 1.69952 1.06045 1.26963 1.50344 1.25003 0.94909 0.99330 0.94990 0.86502 0.79869 0.82920 0.78268 1.20492 1.21086 1.19720 1.21044 0.93161 0.89724 1.51328 0.92346 1.18403 0.92456 0.89360 0.98698 1.20491 0.95096 0.93984 0.90847 1.21416 0.98696 0.97808 0.99371 1.18255 0.95433 0.95160 0.84385 1.84822 1.55125 1.54653 1.36407 1.21352 1.05094 1.03717 0.91673 1.18253 0.95467 0.95133 0.84388 1.84821 1.55135 1.54641 1.36407 1.21413 0.98720 0.97739 0.99383 0.92753 0.94963 0.94961 0.85427 0.76174 0.85934 0.76170 0.85423 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.25 13.29 55.43 0.74 -25.51 15 2 C 0.06 1.68 5.46 -17.82 -0.10 1.58 15 3 Si 0.90 21.69 29.54 -169.99 -5.02 16.67 15 4 H -0.28 -6.65 7.11 56.52 0.40 -6.25 15 5 H -0.29 -6.77 7.11 56.52 0.40 -6.37 15 6 H -0.27 -6.54 7.11 56.52 0.40 -6.14 15 7 C -0.51 -14.50 9.09 -34.44 -0.31 -14.81 15 8 H 0.06 1.66 7.74 -52.48 -0.41 1.25 15 9 C 0.05 1.21 5.10 -29.03 -0.15 1.06 15 10 C 0.00 -0.08 5.07 -104.66 -0.53 -0.61 15 11 C -0.15 -3.05 9.63 -39.41 -0.38 -3.43 15 12 C 0.11 1.96 6.70 -39.24 -0.26 1.69 15 13 O -0.50 -7.53 13.50 -19.41 -0.26 -7.79 15 14 C -0.20 -3.34 9.93 -39.29 -0.39 -3.73 15 15 C 0.11 1.96 6.70 -39.24 -0.26 1.69 15 16 O -0.50 -7.54 13.50 -19.41 -0.26 -7.80 15 17 C -0.15 -3.05 9.64 -39.40 -0.38 -3.43 15 18 H 0.26 7.27 8.31 -40.82 -0.34 6.93 15 19 H 0.03 0.85 8.08 -51.93 -0.42 0.43 15 20 H 0.03 0.85 8.08 -51.93 -0.42 0.43 15 21 H 0.13 2.48 8.06 -52.48 -0.42 2.05 15 22 H 0.38 3.60 9.06 45.56 0.41 4.01 15 23 H 0.12 1.80 8.06 -52.49 -0.42 1.37 15 24 H 0.38 3.60 9.06 45.56 0.41 4.01 15 25 H 0.13 2.48 8.06 -52.49 -0.42 2.06 15 LS Contribution 232.98 15.07 3.51 3.51 Total: -1.00 -32.23 232.98 -4.88 -37.11 By element: Atomic # 1 Polarization: 4.62 SS G_CDS: -0.82 Total: 3.80 kcal Atomic # 6 Polarization: -17.22 SS G_CDS: -2.76 Total: -19.98 kcal Atomic # 7 Polarization: -26.25 SS G_CDS: 0.74 Total: -25.51 kcal Atomic # 8 Polarization: -15.07 SS G_CDS: -0.52 Total: -15.59 kcal Atomic # 14 Polarization: 21.69 SS G_CDS: -5.02 Total: 16.67 kcal Total LS contribution 3.51 Total: 3.51 kcal Total: -32.23 -4.88 -37.11 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307306719.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.956 kcal (2) G-P(sol) polarization free energy of solvation -32.227 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.184 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.885 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.112 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.069 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds