Wall clock time and date at job start Mon Mar 30 2020 02:45:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31522 * 1 3 3 Si 1.86803 * 119.99776 * 2 1 4 4 H 1.48500 * 109.47229 * 270.00614 * 3 2 1 5 5 H 1.48500 * 109.46876 * 30.00454 * 3 2 1 6 6 H 1.48493 * 109.46859 * 150.00112 * 3 2 1 7 7 C 1.37874 * 119.99835 * 180.02562 * 2 1 3 8 8 H 1.08003 * 119.99767 * 179.97438 * 7 2 1 9 9 C 1.50699 * 120.00270 * 359.97438 * 7 2 1 10 10 C 1.50706 * 109.46817 * 180.02562 * 9 7 2 11 11 C 1.38171 * 119.94628 * 269.72017 * 10 9 7 12 12 C 1.38774 * 120.05705 * 179.76803 * 11 10 9 13 13 O 1.35894 * 120.02991 * 180.23307 * 12 11 10 14 14 C 1.38638 * 119.94143 * 0.53552 * 12 11 10 15 15 C 1.38635 * 119.89163 * 359.72181 * 14 12 11 16 16 O 1.35895 * 120.03043 * 179.97438 * 15 14 12 17 17 C 1.38182 * 119.94372 * 90.00092 * 10 9 7 18 18 H 0.96992 * 120.00038 * 359.97438 * 1 2 3 19 19 H 1.09000 * 109.46670 * 60.00337 * 9 7 2 20 20 H 1.09000 * 109.47247 * 300.00051 * 9 7 2 21 21 H 1.08008 * 119.97071 * 0.02562 * 11 10 9 22 22 H 0.96696 * 114.00310 * 270.29874 * 13 12 11 23 23 H 1.08000 * 120.05567 * 179.70209 * 14 12 11 24 24 H 0.96695 * 114.00002 * 270.02408 * 16 15 14 25 25 H 1.07997 * 119.97091 * 359.97438 * 17 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.4965 2.0466 -1.4001 5 1 1.4466 2.6526 0.7001 6 1 3.5467 1.4402 0.7000 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0010 9 6 1.2511 -2.4991 -0.0005 10 6 2.2305 -3.6446 -0.0005 11 6 2.6743 -4.1726 -1.1978 12 6 3.5799 -5.2242 -1.2005 13 8 4.0196 -5.7399 -2.3783 14 6 4.0307 -5.7522 -0.0005 15 6 3.5798 -5.2242 1.1995 16 8 4.0195 -5.7399 2.3774 17 6 2.6787 -4.1688 1.1968 18 1 -0.4850 0.8400 0.0004 19 1 0.6242 -2.5567 -0.8903 20 1 0.6248 -2.5571 0.8897 21 1 2.3193 -3.7638 -2.1323 22 1 3.4749 -6.4626 -2.7190 23 1 4.7317 -6.5737 -0.0004 24 1 3.4749 -6.4628 2.7179 25 1 2.3272 -3.7571 2.1313 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000307306719.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:45:06 Heat of formation + Delta-G solvation = -99.941702 kcal Electronic energy + Delta-G solvation = -11481.025244 eV Core-core repulsion = 9230.413252 eV Total energy + Delta-G solvation = -2250.611993 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 194.073 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -40.93971 -38.69590 -37.27003 -35.07022 -32.50690 -30.20117 -28.98090 -25.40853 -23.45131 -22.31473 -19.40158 -18.54449 -18.02284 -17.22571 -17.09547 -16.60070 -16.13746 -15.11969 -14.50136 -14.30966 -13.72762 -13.57416 -12.92652 -12.88661 -12.56312 -12.45953 -12.15946 -11.62487 -11.53522 -11.25733 -10.63287 -9.53370 -9.48346 -8.24378 -6.37286 0.26942 0.37571 1.38885 1.39510 1.51371 2.36803 2.63976 3.07044 3.09659 3.52024 4.05445 4.21929 4.28301 4.60333 4.78633 5.04751 5.24689 5.29042 5.36920 5.42939 5.70157 5.82233 5.91344 6.12941 6.74393 6.83414 6.92737 7.31485 8.85384 Molecular weight = 194.07amu Principal moments of inertia in cm(-1) A = 0.042272 B = 0.009510 C = 0.008730 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 662.220435 B = 2943.666808 C = 3206.381240 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.927 5.927 2 C 0.008 3.992 3 Si 0.964 3.036 4 H -0.270 1.270 5 H -0.276 1.276 6 H -0.269 1.269 7 C -0.534 4.534 8 H 0.051 0.949 9 C 0.056 3.944 10 C -0.027 4.027 11 C -0.172 4.172 12 C 0.129 3.871 13 O -0.503 6.503 14 C -0.190 4.190 15 C 0.128 3.872 16 O -0.503 6.503 17 C -0.172 4.172 18 H 0.267 0.733 19 H 0.011 0.989 20 H 0.010 0.990 21 H 0.121 0.879 22 H 0.412 0.588 23 H 0.154 0.846 24 H 0.412 0.588 25 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.034 -12.069 -0.018 13.077 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.567 5.567 2 C -0.191 4.191 3 Si 0.789 3.211 4 H -0.196 1.196 5 H -0.201 1.201 6 H -0.193 1.193 7 C -0.572 4.572 8 H 0.069 0.931 9 C 0.019 3.981 10 C -0.027 4.027 11 C -0.190 4.190 12 C 0.084 3.916 13 O -0.316 6.316 14 C -0.209 4.209 15 C 0.084 3.916 16 O -0.316 6.316 17 C -0.190 4.190 18 H 0.076 0.924 19 H 0.029 0.971 20 H 0.029 0.971 21 H 0.139 0.861 22 H 0.271 0.729 23 H 0.172 0.828 24 H 0.271 0.729 25 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges 5.755 -11.146 -0.015 12.544 hybrid contribution -0.707 0.378 -0.004 0.802 sum 5.048 -10.768 -0.019 11.892 Atomic orbital electron populations 1.70059 1.07526 1.28105 1.50992 1.25884 0.95799 1.02995 0.94390 0.85454 0.78566 0.78463 0.78659 1.19577 1.20133 1.19315 1.21354 0.93026 0.91367 1.51484 0.93078 1.18137 0.92816 0.90638 0.96500 1.20121 0.95891 0.94071 0.92658 1.21382 1.00133 0.99195 0.98313 1.18151 0.93819 0.94000 0.85643 1.84753 1.55618 1.55868 1.35382 1.21619 1.04687 1.03861 0.90694 1.18148 0.93855 0.93971 0.85647 1.84753 1.55628 1.55858 1.35388 1.21380 1.00175 0.99148 0.98325 0.92391 0.97113 0.97120 0.86129 0.72907 0.82829 0.72905 0.86153 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -55.68 13.29 21.45 0.28 -55.39 15 2 C 0.01 0.45 5.46 84.65 0.46 0.92 15 3 Si 0.96 44.76 29.54 68.60 2.03 46.79 15 4 H -0.27 -12.12 7.11 99.48 0.71 -11.41 15 5 H -0.28 -12.33 7.11 99.48 0.71 -11.62 15 6 H -0.27 -12.20 7.11 99.48 0.71 -11.50 15 7 C -0.53 -31.01 9.09 25.60 0.23 -30.77 15 8 H 0.05 2.96 7.74 -2.91 -0.02 2.94 15 9 C 0.06 2.99 5.10 29.10 0.15 3.14 15 10 C -0.03 -1.20 5.07 -19.89 -0.10 -1.30 15 11 C -0.17 -6.77 9.63 22.38 0.22 -6.56 15 12 C 0.13 4.19 6.70 22.49 0.15 4.34 15 13 O -0.50 -13.46 13.50 -92.36 -1.25 -14.71 15 14 C -0.19 -5.70 9.93 22.46 0.22 -5.48 15 15 C 0.13 4.19 6.70 22.49 0.15 4.34 15 16 O -0.50 -13.49 13.50 -92.37 -1.25 -14.74 15 17 C -0.17 -6.79 9.64 22.38 0.22 -6.57 15 18 H 0.27 14.99 8.31 -92.71 -0.77 14.22 15 19 H 0.01 0.60 8.08 -2.39 -0.02 0.58 15 20 H 0.01 0.59 8.08 -2.39 -0.02 0.57 15 21 H 0.12 4.79 8.06 -2.91 -0.02 4.77 15 22 H 0.41 6.18 9.06 -74.06 -0.67 5.51 15 23 H 0.15 3.70 8.06 -2.91 -0.02 3.68 15 24 H 0.41 6.20 9.06 -74.06 -0.67 5.53 15 25 H 0.12 4.80 8.06 -2.91 -0.02 4.77 15 Total: -1.00 -69.34 232.98 1.39 -67.95 By element: Atomic # 1 Polarization: 8.16 SS G_CDS: -0.12 Total: 8.04 kcal Atomic # 6 Polarization: -39.64 SS G_CDS: 1.70 Total: -37.94 kcal Atomic # 7 Polarization: -55.68 SS G_CDS: 0.28 Total: -55.39 kcal Atomic # 8 Polarization: -26.95 SS G_CDS: -2.49 Total: -29.45 kcal Atomic # 14 Polarization: 44.76 SS G_CDS: 2.03 Total: 46.79 kcal Total: -69.34 1.39 -67.95 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307306719.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.990 kcal (2) G-P(sol) polarization free energy of solvation -69.343 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -101.333 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.392 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.952 kcal (6) G-S(sol) free energy of system = (1) + (5) -99.942 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds