Wall clock time and date at job start Mon Mar 30 2020 02:20:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.47196 * 1 3 3 C 1.17400 * 179.97438 * 2 1 4 4 C 1.47204 * 179.97438 * 168.38991 * 3 2 1 5 5 N 1.46897 * 109.47025 * 273.73915 * 4 3 2 6 6 C 1.48535 * 111.00063 * 287.40027 * 5 4 3 7 7 C 1.54942 * 103.22593 * 200.27918 * 6 5 4 8 8 C 1.54599 * 102.92043 * 37.41662 * 7 6 5 9 9 H 1.09000 * 110.39177 * 97.00373 * 8 7 6 10 10 C 1.50703 * 110.30641 * 219.12506 * 8 7 6 11 11 H 1.07994 * 119.99603 * 115.71512 * 10 8 7 12 12 C 1.37875 * 119.99838 * 295.71656 * 10 8 7 13 13 N 1.31513 * 120.00380 * 359.97438 * 12 10 8 14 14 Si 1.86798 * 119.99848 * 180.02562 * 12 10 8 15 15 H 1.48506 * 109.47297 * 359.97438 * 14 12 10 16 16 H 1.48503 * 109.47261 * 239.99776 * 14 12 10 17 17 H 1.48500 * 109.47454 * 119.99769 * 14 12 10 18 18 C 1.47907 * 110.99848 * 170.00547 * 5 4 3 19 19 H 1.09005 * 109.47101 * 97.86588 * 1 2 3 20 20 H 1.08995 * 109.47545 * 217.86921 * 1 2 3 21 21 H 1.09004 * 109.47048 * 337.87124 * 1 2 3 22 22 H 1.09003 * 109.46543 * 153.74393 * 4 3 2 23 23 H 1.08992 * 109.47206 * 33.74403 * 4 3 2 24 24 H 1.09004 * 110.66774 * 318.71393 * 6 5 4 25 25 H 1.08997 * 110.66798 * 81.68011 * 6 5 4 26 26 H 1.08997 * 110.72463 * 279.05238 * 7 6 5 27 27 H 1.09007 * 110.72230 * 155.76864 * 7 6 5 28 28 H 0.97001 * 119.99667 * 0.02562 * 13 12 10 29 29 H 1.08999 * 109.91413 * 26.49223 * 18 5 4 30 30 H 1.08998 * 109.91352 * 265.20078 * 18 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.4720 0.0000 0.0000 3 6 2.6460 0.0005 0.0000 4 6 4.1180 0.0018 -0.0001 5 7 4.6078 -0.0881 1.3818 6 6 4.3932 1.1904 2.1069 7 6 5.3960 1.1026 3.2848 8 6 6.6208 0.4093 2.6451 9 1 7.3609 1.1498 2.3417 10 6 7.2305 -0.5724 3.6124 11 1 7.2302 -1.6276 3.3829 12 6 7.7887 -0.1232 4.7904 13 7 7.7895 1.1620 5.0697 14 14 8.5450 -1.3399 5.9891 15 1 8.4178 -2.7156 5.4445 16 1 7.8373 -1.2563 7.2919 17 1 9.9809 -1.0151 6.1842 18 6 6.0668 -0.3289 1.4124 19 1 -0.3633 -0.1406 -1.0180 20 1 -0.3634 -0.8112 0.6308 21 1 -0.3633 0.9520 0.3871 22 1 4.4804 0.9238 -0.4548 23 1 4.4820 -0.8523 -0.5710 24 1 4.6266 2.0403 1.4655 25 1 3.3692 1.2571 2.4743 26 1 4.9885 0.4965 4.0939 27 1 5.6594 2.0982 3.6422 28 1 7.3970 1.7938 4.4471 29 1 6.5271 0.0644 0.5061 30 1 6.2650 -1.3972 1.4992 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000307357307.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:20:25 Heat of formation + Delta-G solvation = 40.634582 kcal Electronic energy + Delta-G solvation = -11661.965959 eV Core-core repulsion = 9651.001568 eV Total energy + Delta-G solvation = -2010.964391 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 193.116 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -38.29689 -34.49827 -33.13088 -30.81563 -28.36342 -28.09833 -24.94271 -23.71235 -20.43853 -19.67169 -16.88716 -16.65869 -15.13070 -14.72254 -14.17841 -13.73355 -13.52355 -13.41089 -13.21301 -12.78241 -12.11310 -11.60823 -11.19394 -11.04292 -10.74789 -10.47910 -10.09805 -9.84350 -9.77941 -9.53855 -9.50689 -8.43758 -8.32362 -7.87003 -6.30297 -4.01432 2.84416 2.92452 3.46958 3.50496 3.64316 4.38310 4.56730 4.77070 5.38003 5.46217 5.52230 5.56912 5.62484 5.66428 5.77102 5.93443 5.97798 6.09825 6.15193 6.39470 6.69222 6.86133 6.99928 7.23657 7.31146 7.59902 7.76829 7.87487 8.26659 8.48417 8.92443 9.69598 11.08091 Molecular weight = 193.12amu Principal moments of inertia in cm(-1) A = 0.065486 B = 0.007427 C = 0.007424 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 427.466658 B = 3769.147721 C = 3770.449988 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.033 4.033 2 C -0.206 4.206 3 C -0.160 4.160 4 C 0.154 3.846 5 N -0.513 5.513 6 C 0.035 3.965 7 C -0.110 4.110 8 C 0.024 3.976 9 H 0.022 0.978 10 C -0.587 4.587 11 H 0.052 0.948 12 C 0.018 3.982 13 N -0.916 5.916 14 Si 1.073 2.927 15 H -0.289 1.289 16 H -0.288 1.288 17 H -0.288 1.288 18 C 0.052 3.948 19 H 0.075 0.925 20 H 0.077 0.923 21 H 0.076 0.924 22 H 0.053 0.947 23 H 0.091 0.909 24 H 0.031 0.969 25 H 0.065 0.935 26 H 0.068 0.932 27 H 0.053 0.947 28 H 0.271 0.729 29 H 0.023 0.977 30 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.032 -0.929 -8.358 12.341 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.089 4.089 2 C -0.207 4.207 3 C -0.160 4.160 4 C 0.027 3.973 5 N -0.237 5.237 6 C -0.093 4.093 7 C -0.149 4.149 8 C 0.005 3.995 9 H 0.040 0.960 10 C -0.625 4.625 11 H 0.070 0.930 12 C -0.186 4.186 13 N -0.552 5.552 14 Si 0.902 3.098 15 H -0.215 1.215 16 H -0.214 1.214 17 H -0.215 1.215 18 C -0.075 4.075 19 H 0.093 0.907 20 H 0.096 0.904 21 H 0.094 0.906 22 H 0.071 0.929 23 H 0.109 0.891 24 H 0.050 0.950 25 H 0.084 0.916 26 H 0.087 0.913 27 H 0.072 0.928 28 H 0.082 0.918 29 H 0.042 0.958 30 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -8.522 -1.488 -6.661 10.918 hybrid contribution -0.410 0.814 -1.948 2.150 sum -8.932 -0.673 -8.608 12.423 Atomic orbital electron populations 1.18766 0.84893 1.02790 1.02472 1.22292 0.93803 1.03008 1.01638 1.22284 0.93404 0.99963 1.00398 1.19163 0.84725 1.01090 0.92341 1.64755 1.16208 1.32112 1.10666 1.23300 1.00058 0.89394 0.96513 1.22706 0.95993 0.99889 0.96292 1.19663 0.92708 0.95034 0.92073 0.96003 1.22049 1.41011 0.93855 1.05573 0.92990 1.25788 0.95610 0.99209 0.98009 1.70739 1.43463 1.01918 1.39107 0.83485 0.76377 0.74392 0.75563 1.21534 1.21426 1.21471 1.22995 0.84787 1.01731 0.98004 0.90686 0.90396 0.90576 0.92909 0.89051 0.95038 0.91641 0.91286 0.92811 0.91769 0.95818 0.90536 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.03 -0.34 10.32 34.37 0.35 0.01 16 2 C -0.21 -3.13 14.13 -37.12 -0.52 -3.66 16 3 C -0.16 -2.70 13.18 -37.12 -0.49 -3.19 16 4 C 0.15 2.59 5.20 -6.61 -0.03 2.55 16 5 N -0.51 -10.42 5.22 -233.95 -1.22 -11.64 16 6 C 0.03 0.71 6.10 -1.89 -0.01 0.70 16 7 C -0.11 -2.61 5.57 -24.87 -0.14 -2.75 16 8 C 0.02 0.61 2.54 -90.41 -0.23 0.38 16 9 H 0.02 0.58 7.95 -51.93 -0.41 0.17 16 10 C -0.59 -16.52 8.38 -34.44 -0.29 -16.81 16 11 H 0.05 1.47 7.34 -52.49 -0.39 1.09 16 12 C 0.02 0.51 5.34 -17.82 -0.10 0.41 16 13 N -0.92 -27.50 13.45 55.43 0.75 -26.76 16 14 Si 1.07 25.47 29.90 -169.99 -5.08 20.38 16 15 H -0.29 -6.57 7.11 56.52 0.40 -6.17 16 16 H -0.29 -6.73 7.11 56.52 0.40 -6.33 16 17 H -0.29 -6.70 7.11 56.52 0.40 -6.30 16 18 C 0.05 1.12 6.31 -2.75 -0.02 1.10 16 19 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 20 H 0.08 0.72 8.14 -51.93 -0.42 0.29 16 21 H 0.08 0.68 8.14 -51.93 -0.42 0.26 16 22 H 0.05 0.83 7.83 -51.93 -0.41 0.42 16 23 H 0.09 1.38 8.08 -51.93 -0.42 0.97 16 24 H 0.03 0.60 7.81 -51.93 -0.41 0.19 16 25 H 0.07 1.28 8.14 -51.93 -0.42 0.86 16 26 H 0.07 1.78 7.86 -51.93 -0.41 1.37 16 27 H 0.05 1.27 7.10 -51.93 -0.37 0.90 16 28 H 0.27 8.02 5.65 -40.82 -0.23 7.79 16 29 H 0.02 0.46 7.77 -51.93 -0.40 0.06 16 30 H 0.08 1.71 7.39 -51.93 -0.38 1.32 16 LS Contribution 254.32 15.07 3.83 3.83 Total: -1.00 -30.83 254.32 -7.51 -38.34 By element: Atomic # 1 Polarization: 1.40 SS G_CDS: -4.31 Total: -2.91 kcal Atomic # 6 Polarization: -19.77 SS G_CDS: -1.47 Total: -21.25 kcal Atomic # 7 Polarization: -37.92 SS G_CDS: -0.48 Total: -38.40 kcal Atomic # 14 Polarization: 25.47 SS G_CDS: -5.08 Total: 20.38 kcal Total LS contribution 3.83 Total: 3.83 kcal Total: -30.83 -7.51 -38.34 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307357307.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.975 kcal (2) G-P(sol) polarization free energy of solvation -30.829 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 48.145 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.511 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.340 kcal (6) G-S(sol) free energy of system = (1) + (5) 40.635 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds