Wall clock time and date at job start Mon Mar 30 2020 02:34:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31388 * 1 3 3 Si 1.86802 * 120.00245 * 2 1 4 4 H 1.48500 * 109.46986 * 269.99947 * 3 2 1 5 5 H 1.48495 * 109.46944 * 30.00285 * 3 2 1 6 6 H 1.48502 * 109.46895 * 150.00277 * 3 2 1 7 7 C 1.38857 * 119.99959 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99935 * 179.97438 * 7 2 1 9 9 O 1.34828 * 119.99672 * 359.97438 * 7 2 1 10 10 C 1.34688 * 116.99690 * 179.97438 * 9 7 2 11 11 O 1.21471 * 120.00412 * 0.02562 * 10 9 7 12 12 C 1.47949 * 120.00147 * 180.02562 * 10 9 7 13 13 C 1.40203 * 121.15548 * 180.02562 * 12 10 9 14 14 C 1.38477 * 117.81198 * 179.97438 * 13 12 10 15 15 N 1.31936 * 119.97508 * 0.02562 * 14 13 12 16 16 N 1.28269 * 122.54508 * 359.97438 * 15 14 13 17 17 C 1.31911 * 122.33512 * 0.02562 * 16 15 14 18 18 H 0.96999 * 119.99569 * 359.97438 * 1 2 3 19 19 H 1.07999 * 121.09469 * 359.95937 * 13 12 10 20 20 H 1.07997 * 120.01201 * 179.97438 * 14 13 12 21 21 H 1.08003 * 120.17986 * 180.27582 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3139 0.0000 0.0000 3 14 2.2480 1.6177 0.0000 4 1 2.4955 2.0464 -1.4001 5 1 1.4455 2.6526 0.7001 6 1 3.5455 1.4400 0.7000 7 6 2.0082 -1.2025 -0.0005 8 1 3.0882 -1.2025 -0.0010 9 8 1.3339 -2.3701 -0.0005 10 6 2.0675 -3.4997 -0.0016 11 8 3.2805 -3.4363 -0.0021 12 6 1.3958 -4.8180 -0.0023 13 6 2.1356 -6.0090 -0.0028 14 6 1.4360 -7.2041 -0.0029 15 7 0.1167 -7.1956 -0.0029 16 7 -0.5664 -6.1099 -0.0024 17 6 0.0013 -4.9192 -0.0023 18 1 -0.4849 0.8401 0.0004 19 1 3.2155 -5.9948 -0.0035 20 1 1.9702 -8.1427 -0.0037 21 1 -0.6079 -4.0273 0.0026 RHF calculation, no. of doubly occupied orbitals= 34 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000307479826.mol2 21 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:34:17 Heat of formation + Delta-G solvation = -21.429046 kcal Electronic energy + Delta-G solvation = -11313.122442 eV Core-core repulsion = 8962.374670 eV Total energy + Delta-G solvation = -2350.747772 eV No. of doubly occupied orbitals = 34 Molecular weight (most abundant/longest-lived isotopes) = 194.048 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -40.71885 -38.97672 -35.51126 -32.85176 -32.51957 -32.16956 -26.38373 -24.65284 -24.14851 -20.87467 -18.13730 -17.65431 -17.01138 -16.06222 -15.25040 -15.06005 -14.47811 -14.22531 -14.21982 -13.09379 -12.71714 -11.84343 -11.46328 -10.74836 -10.74551 -10.56720 -10.14688 -9.93129 -9.81304 -9.75142 -9.20064 -8.82904 -6.69895 -4.30362 0.63809 1.13912 2.98721 3.05453 3.12162 3.31750 3.64855 4.03197 4.18172 4.36082 4.71258 4.88614 4.92085 5.13809 5.60177 5.64487 6.18517 6.42612 6.54587 7.13485 7.66164 8.42192 8.77265 8.89518 9.52508 10.46327 Molecular weight = 194.05amu Principal moments of inertia in cm(-1) A = 0.078147 B = 0.009201 C = 0.008255 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 358.213399 B = 3042.561791 C = 3390.933614 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.845 5.845 2 C 0.043 3.957 3 Si 0.950 3.050 4 H -0.270 1.270 5 H -0.275 1.275 6 H -0.264 1.264 7 C -0.371 4.371 8 H 0.103 0.897 9 O -0.194 6.194 10 C 0.422 3.578 11 O -0.547 6.547 12 C -0.080 4.080 13 C -0.080 4.080 14 C 0.031 3.969 15 N -0.247 5.247 16 N -0.251 5.251 17 C 0.080 3.920 18 H 0.276 0.724 19 H 0.158 0.842 20 H 0.174 0.826 21 H 0.188 0.812 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.128 -5.976 0.005 6.344 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.480 5.480 2 C -0.164 4.164 3 Si 0.774 3.226 4 H -0.195 1.195 5 H -0.200 1.200 6 H -0.188 1.188 7 C -0.447 4.447 8 H 0.120 0.880 9 O -0.100 6.100 10 C 0.270 3.730 11 O -0.446 6.446 12 C -0.092 4.092 13 C -0.109 4.109 14 C -0.133 4.133 15 N -0.090 5.090 16 N -0.092 5.092 17 C -0.084 4.084 18 H 0.086 0.914 19 H 0.176 0.824 20 H 0.191 0.809 21 H 0.205 0.795 Dipole moment (debyes) X Y Z Total from point charges 0.812 -6.652 0.010 6.702 hybrid contribution 1.806 1.633 -0.009 2.435 sum 2.618 -5.019 0.001 5.661 Atomic orbital electron populations 1.69953 1.06226 1.28620 1.43237 1.25502 0.95947 0.99256 0.95684 0.85561 0.79110 0.78909 0.79049 1.19532 1.19995 1.18792 1.21453 0.92814 0.79364 1.51079 0.87974 1.83838 1.39389 1.13332 1.73424 1.20261 0.85822 0.84855 0.82094 1.90645 1.14616 1.87422 1.51877 1.20635 0.94908 0.93682 1.00018 1.22514 1.02876 0.91360 0.94152 1.24196 0.92730 0.98914 0.97470 1.72795 1.06820 1.21245 1.08159 1.73013 1.31321 0.95185 1.09712 1.24870 0.93050 0.98657 0.91851 0.91375 0.82448 0.80908 0.79505 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.85 -23.14 13.67 55.49 0.76 -22.38 14 2 C 0.04 1.14 5.50 -17.51 -0.10 1.04 14 3 Si 0.95 19.92 29.55 -169.99 -5.02 14.90 14 4 H -0.27 -5.51 7.11 56.52 0.40 -5.11 14 5 H -0.27 -5.54 7.11 56.52 0.40 -5.14 14 6 H -0.26 -5.45 7.11 56.52 0.40 -5.05 14 7 C -0.37 -10.36 9.65 30.96 0.30 -10.07 14 8 H 0.10 2.85 6.86 -52.49 -0.36 2.49 14 9 O -0.19 -5.27 9.10 -21.44 -0.20 -5.46 14 10 C 0.42 10.19 7.86 34.71 0.27 10.47 14 11 O -0.55 -14.17 15.74 -19.24 -0.30 -14.47 14 12 C -0.08 -1.56 5.92 -104.59 -0.62 -2.18 14 13 C -0.08 -1.27 9.78 -38.76 -0.38 -1.64 14 14 C 0.03 0.43 11.30 -17.42 -0.20 0.23 14 15 N -0.25 -4.19 11.48 30.52 0.35 -3.84 14 16 N -0.25 -4.64 11.49 30.80 0.35 -4.29 14 17 C 0.08 1.50 10.93 -16.92 -0.18 1.32 14 18 H 0.28 6.89 8.31 -40.82 -0.34 6.55 14 19 H 0.16 2.24 7.80 -52.49 -0.41 1.83 14 20 H 0.17 1.62 8.06 -52.49 -0.42 1.20 14 21 H 0.19 3.49 7.71 -52.48 -0.40 3.08 14 LS Contribution 212.02 15.07 3.20 3.20 Total: -1.00 -30.83 212.02 -2.50 -33.33 By element: Atomic # 1 Polarization: 0.59 SS G_CDS: -0.73 Total: -0.15 kcal Atomic # 6 Polarization: 0.07 SS G_CDS: -0.90 Total: -0.84 kcal Atomic # 7 Polarization: -31.97 SS G_CDS: 1.46 Total: -30.51 kcal Atomic # 8 Polarization: -19.43 SS G_CDS: -0.50 Total: -19.93 kcal Atomic # 14 Polarization: 19.92 SS G_CDS: -5.02 Total: 14.90 kcal Total LS contribution 3.20 Total: 3.20 kcal Total: -30.83 -2.50 -33.33 kcal The number of atoms in the molecule is 21 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307479826.mol2 21 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.898 kcal (2) G-P(sol) polarization free energy of solvation -30.828 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.930 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.499 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.327 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.429 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds