Wall clock time and date at job start Mon Mar 30 2020 02:34:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31388 * 1 3 3 Si 1.86802 * 120.00245 * 2 1 4 4 H 1.48500 * 109.46986 * 269.99947 * 3 2 1 5 5 H 1.48495 * 109.46944 * 30.00285 * 3 2 1 6 6 H 1.48502 * 109.46895 * 150.00277 * 3 2 1 7 7 C 1.38857 * 119.99959 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99935 * 179.97438 * 7 2 1 9 9 O 1.34828 * 119.99672 * 359.97438 * 7 2 1 10 10 C 1.34688 * 116.99690 * 179.97438 * 9 7 2 11 11 O 1.21471 * 120.00412 * 0.02562 * 10 9 7 12 12 C 1.47949 * 120.00147 * 180.02562 * 10 9 7 13 13 C 1.40203 * 121.15548 * 180.02562 * 12 10 9 14 14 C 1.38477 * 117.81198 * 179.97438 * 13 12 10 15 15 N 1.31936 * 119.97508 * 0.02562 * 14 13 12 16 16 N 1.28269 * 122.54508 * 359.97438 * 15 14 13 17 17 C 1.31911 * 122.33512 * 0.02562 * 16 15 14 18 18 H 0.96999 * 119.99569 * 359.97438 * 1 2 3 19 19 H 1.07999 * 121.09469 * 359.95937 * 13 12 10 20 20 H 1.07997 * 120.01201 * 179.97438 * 14 13 12 21 21 H 1.08003 * 120.17986 * 180.27582 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3139 0.0000 0.0000 3 14 2.2480 1.6177 0.0000 4 1 2.4955 2.0464 -1.4001 5 1 1.4455 2.6526 0.7001 6 1 3.5455 1.4400 0.7000 7 6 2.0082 -1.2025 -0.0005 8 1 3.0882 -1.2025 -0.0010 9 8 1.3339 -2.3701 -0.0005 10 6 2.0675 -3.4997 -0.0016 11 8 3.2805 -3.4363 -0.0021 12 6 1.3958 -4.8180 -0.0023 13 6 2.1356 -6.0090 -0.0028 14 6 1.4360 -7.2041 -0.0029 15 7 0.1167 -7.1956 -0.0029 16 7 -0.5664 -6.1099 -0.0024 17 6 0.0013 -4.9192 -0.0023 18 1 -0.4849 0.8401 0.0004 19 1 3.2155 -5.9948 -0.0035 20 1 1.9702 -8.1427 -0.0037 21 1 -0.6079 -4.0273 0.0026 RHF calculation, no. of doubly occupied orbitals= 34 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000307479826.mol2 21 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:34:17 Heat of formation + Delta-G solvation = -42.897755 kcal Electronic energy + Delta-G solvation = -11314.053395 eV Core-core repulsion = 8962.374670 eV Total energy + Delta-G solvation = -2351.678725 eV No. of doubly occupied orbitals = 34 Molecular weight (most abundant/longest-lived isotopes) = 194.048 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -42.19176 -40.87233 -37.49172 -34.55459 -34.22098 -33.63891 -28.22209 -26.34564 -25.55681 -22.62634 -20.09473 -19.44705 -18.44403 -17.50612 -17.06619 -16.88238 -16.21528 -15.78735 -15.70772 -14.55279 -14.48168 -13.69155 -13.32224 -12.50205 -12.30656 -12.13601 -12.00559 -11.59951 -11.35702 -11.19665 -10.82366 -10.78239 -8.65168 -6.41883 -0.83040 -0.19822 1.31718 1.33855 1.51762 1.63193 1.96205 2.43714 2.51754 2.93401 3.03723 3.30456 3.52629 3.79895 4.14739 4.40820 4.75699 4.85748 5.08014 5.09906 5.69073 6.43115 6.78385 7.49997 7.55987 8.54212 Molecular weight = 194.05amu Principal moments of inertia in cm(-1) A = 0.078147 B = 0.009201 C = 0.008255 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 358.213399 B = 3042.561791 C = 3390.933614 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.888 5.888 2 C 0.001 3.999 3 Si 1.022 2.978 4 H -0.259 1.259 5 H -0.260 1.260 6 H -0.261 1.261 7 C -0.419 4.419 8 H 0.091 0.909 9 O -0.222 6.222 10 C 0.431 3.569 11 O -0.566 6.566 12 C -0.110 4.110 13 C -0.053 4.053 14 C 0.055 3.945 15 N -0.254 5.254 16 N -0.265 5.265 17 C 0.083 3.917 18 H 0.284 0.716 19 H 0.181 0.819 20 H 0.233 0.767 21 H 0.177 0.823 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.095 -7.317 -0.011 7.945 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.524 5.524 2 C -0.201 4.201 3 Si 0.840 3.160 4 H -0.183 1.183 5 H -0.184 1.184 6 H -0.185 1.185 7 C -0.494 4.494 8 H 0.108 0.892 9 O -0.129 6.129 10 C 0.279 3.721 11 O -0.465 6.465 12 C -0.122 4.122 13 C -0.083 4.083 14 C -0.109 4.109 15 N -0.096 5.096 16 N -0.106 5.106 17 C -0.082 4.082 18 H 0.094 0.906 19 H 0.198 0.802 20 H 0.249 0.751 21 H 0.195 0.805 Dipole moment (debyes) X Y Z Total from point charges 1.756 -8.018 -0.007 8.208 hybrid contribution 1.555 1.703 -0.005 2.307 sum 3.311 -6.315 -0.012 7.130 Atomic orbital electron populations 1.70029 1.07764 1.30050 1.44526 1.26647 0.96915 1.02425 0.94156 0.84565 0.77764 0.74033 0.79676 1.18326 1.18352 1.18493 1.21620 0.92634 0.80492 1.54703 0.89165 1.83866 1.40015 1.14002 1.74992 1.21083 0.85788 0.85814 0.79395 1.90606 1.15668 1.88084 1.52117 1.20480 0.95483 0.92544 1.03676 1.22927 1.03985 0.90420 0.90933 1.25008 0.91423 1.00256 0.94231 1.72744 1.08516 1.20552 1.07794 1.73051 1.31912 0.95110 1.10518 1.24694 0.92732 0.98800 0.91972 0.90649 0.80167 0.75111 0.80544 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -49.98 13.67 21.64 0.30 -49.68 14 2 C 0.00 0.06 5.50 84.91 0.47 0.53 14 3 Si 1.02 41.06 29.55 68.60 2.03 43.09 14 4 H -0.26 -9.85 7.11 99.48 0.71 -9.14 14 5 H -0.26 -9.67 7.11 99.48 0.71 -8.97 14 6 H -0.26 -10.23 7.11 99.48 0.71 -9.53 14 7 C -0.42 -24.31 9.65 67.97 0.66 -23.66 14 8 H 0.09 5.26 6.86 -2.91 -0.02 5.24 14 9 O -0.22 -12.55 9.10 12.06 0.11 -12.44 14 10 C 0.43 21.20 7.86 70.40 0.55 21.75 14 11 O -0.57 -29.56 15.74 19.93 0.31 -29.25 14 12 C -0.11 -4.21 5.92 -19.84 -0.12 -4.32 14 13 C -0.05 -1.51 9.78 22.80 0.22 -1.29 14 14 C 0.05 1.27 11.30 84.73 0.96 2.23 14 15 N -0.25 -7.79 11.48 -57.34 -0.66 -8.45 14 16 N -0.27 -9.45 11.49 -56.48 -0.65 -10.10 14 17 C 0.08 3.10 10.93 85.07 0.93 4.03 14 18 H 0.28 14.43 8.31 -92.71 -0.77 13.66 14 19 H 0.18 4.36 7.80 -2.91 -0.02 4.34 14 20 H 0.23 2.67 8.06 -2.91 -0.02 2.65 14 21 H 0.18 6.91 7.71 -2.91 -0.02 6.89 14 Total: -1.00 -68.80 212.02 6.37 -62.43 By element: Atomic # 1 Polarization: 3.86 SS G_CDS: 1.26 Total: 5.13 kcal Atomic # 6 Polarization: -4.40 SS G_CDS: 3.67 Total: -0.73 kcal Atomic # 7 Polarization: -67.22 SS G_CDS: -1.01 Total: -68.23 kcal Atomic # 8 Polarization: -42.12 SS G_CDS: 0.42 Total: -41.69 kcal Atomic # 14 Polarization: 41.06 SS G_CDS: 2.03 Total: 43.09 kcal Total: -68.80 6.37 -62.43 kcal The number of atoms in the molecule is 21 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307479826.mol2 21 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.535 kcal (2) G-P(sol) polarization free energy of solvation -68.804 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.268 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.370 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.433 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.898 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds