Wall clock time and date at job start Mon Mar 30 2020 02:35:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31521 * 1 3 3 Si 1.86800 * 120.00083 * 2 1 4 4 H 1.48503 * 109.46750 * 269.99820 * 3 2 1 5 5 H 1.48496 * 109.47026 * 29.99134 * 3 2 1 6 6 H 1.48493 * 109.47327 * 149.99726 * 3 2 1 7 7 C 1.37876 * 119.99977 * 179.97438 * 2 1 3 8 8 H 1.07997 * 119.99889 * 180.02562 * 7 2 1 9 9 C 1.50700 * 119.99727 * 0.02562 * 7 2 1 10 10 C 1.50699 * 109.46802 * 179.97438 * 9 7 2 11 11 C 1.38305 * 119.92098 * 90.00406 * 10 9 7 12 12 C 1.38074 * 120.08211 * 179.97438 * 11 10 9 13 13 C 1.38968 * 119.92260 * 0.02562 * 12 11 10 14 14 S 1.76207 * 120.08233 * 180.02562 * 13 12 11 15 15 C 1.38977 * 119.83827 * 0.27566 * 13 12 11 16 16 C 1.38077 * 119.91938 * 359.45189 * 15 13 12 17 17 H 0.96999 * 119.99759 * 0.02562 * 1 2 3 18 18 H 1.09001 * 109.46828 * 60.00483 * 9 7 2 19 19 H 1.08991 * 109.47669 * 300.00235 * 9 7 2 20 20 H 1.08008 * 119.95503 * 0.02562 * 11 10 9 21 21 H 1.08004 * 120.04052 * 180.02562 * 12 11 10 22 22 H 1.34505 * 102.99714 * 90.00136 * 14 13 12 23 23 H 1.08001 * 120.03930 * 179.72260 * 15 13 12 24 24 H 1.07994 * 119.96450 * 180.27635 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0463 -1.4001 5 1 1.4466 2.6527 0.6998 6 1 3.5467 1.4402 0.7001 7 6 2.0046 -1.1940 0.0005 8 1 3.0845 -1.1940 0.0010 9 6 1.2510 -2.4991 0.0005 10 6 2.2303 -3.6445 0.0005 11 6 2.6785 -4.1689 1.1992 12 6 3.5754 -5.2188 1.2031 13 6 4.0281 -5.7482 0.0006 14 16 5.1721 -7.0884 0.0007 15 6 3.5804 -5.2146 -1.2020 16 6 2.6792 -4.1685 -1.1982 17 1 -0.4850 0.8401 -0.0004 18 1 0.6248 -2.5570 -0.8897 19 1 0.6240 -2.5567 0.8902 20 1 2.3259 -3.7573 2.1335 21 1 3.9247 -5.6280 2.1396 22 1 4.3717 -8.1693 0.0000 23 1 3.9336 -5.6206 -2.1384 24 1 2.3274 -3.7563 -2.1323 RHF calculation, no. of doubly occupied orbitals= 32 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000307517484.mol2 24 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:35:42 Heat of formation + Delta-G solvation = -4.098720 kcal Electronic energy + Delta-G solvation = -9498.053005 eV Core-core repulsion = 7694.349947 eV Total energy + Delta-G solvation = -1803.703058 eV No. of doubly occupied orbitals = 32 Molecular weight (most abundant/longest-lived isotopes) = 194.046 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -40.06152 -35.50636 -33.12750 -31.89038 -29.02356 -25.39578 -23.55060 -22.16181 -19.04912 -18.52828 -17.17055 -16.52108 -16.19673 -15.84354 -14.65513 -14.33177 -14.32822 -13.91799 -13.35640 -12.92763 -12.63772 -12.53791 -11.99614 -11.93857 -11.56777 -11.24366 -10.62244 -9.86578 -9.51515 -9.12898 -8.22962 -6.36025 0.08332 0.49608 0.77038 1.40923 1.41317 1.53056 1.88428 2.39035 2.87147 3.08895 3.97185 4.11868 4.26704 4.54378 4.59226 4.87568 5.03707 5.30818 5.30948 5.35663 5.45933 5.71495 5.96808 5.97576 6.15468 6.76444 7.32932 8.86759 Molecular weight = 194.05amu Principal moments of inertia in cm(-1) A = 0.072448 B = 0.007772 C = 0.007602 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 386.389000 B = 3601.968751 C = 3682.340310 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.929 5.929 2 C 0.005 3.995 3 Si 0.966 3.034 4 H -0.271 1.271 5 H -0.279 1.279 6 H -0.266 1.266 7 C -0.530 4.530 8 H 0.055 0.945 9 C 0.051 3.949 10 C -0.034 4.034 11 C -0.142 4.142 12 C -0.067 4.067 13 C -0.143 4.143 14 S -0.124 6.124 15 C -0.067 4.067 16 C -0.142 4.142 17 H 0.266 0.734 18 H 0.008 0.992 19 H 0.009 0.991 20 H 0.125 0.875 21 H 0.151 0.849 22 H 0.080 0.920 23 H 0.152 0.848 24 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.516 -10.218 -0.013 12.684 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.569 5.569 2 C -0.193 4.193 3 Si 0.790 3.210 4 H -0.197 1.197 5 H -0.205 1.205 6 H -0.190 1.190 7 C -0.568 4.568 8 H 0.074 0.926 9 C 0.014 3.986 10 C -0.034 4.034 11 C -0.162 4.162 12 C -0.088 4.088 13 C -0.254 4.254 14 S 0.033 5.967 15 C -0.087 4.087 16 C -0.162 4.162 17 H 0.075 0.925 18 H 0.027 0.973 19 H 0.027 0.973 20 H 0.143 0.857 21 H 0.169 0.831 22 H 0.044 0.956 23 H 0.169 0.831 24 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges 8.143 -10.675 -0.009 13.426 hybrid contribution -1.470 1.075 -0.007 1.822 sum 6.673 -9.599 -0.016 11.691 Atomic orbital electron populations 1.70073 1.07637 1.28050 1.51092 1.25920 0.95780 1.03124 0.94489 0.85428 0.78586 0.78357 0.78604 1.19658 1.20467 1.19034 1.21336 0.93130 0.91049 1.51268 0.92628 1.18194 0.92975 0.91006 0.96396 1.20671 0.95129 0.93636 0.93931 1.21196 0.99394 0.97628 0.97961 1.21697 0.94254 0.94771 0.98040 1.21220 1.05539 1.02778 0.95891 1.85711 1.11968 1.00331 1.98699 1.21698 0.94233 0.94775 0.98036 1.21197 0.99338 0.97683 0.97957 0.92491 0.97334 0.97319 0.85714 0.83092 0.95621 0.83082 0.85703 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -55.13 13.29 21.45 0.28 -54.85 14 2 C 0.01 0.30 5.46 84.65 0.46 0.76 14 3 Si 0.97 43.70 29.54 68.60 2.03 45.72 14 4 H -0.27 -11.86 7.11 99.48 0.71 -11.15 14 5 H -0.28 -12.28 7.11 99.48 0.71 -11.57 14 6 H -0.27 -11.65 7.11 99.48 0.71 -10.95 14 7 C -0.53 -29.75 9.09 25.60 0.23 -29.52 14 8 H 0.06 3.08 7.74 -2.91 -0.02 3.06 14 9 C 0.05 2.68 5.10 29.10 0.15 2.82 14 10 C -0.03 -1.44 5.07 -19.83 -0.10 -1.54 14 11 C -0.14 -5.33 9.69 22.25 0.22 -5.12 14 12 C -0.07 -2.10 9.79 22.41 0.22 -1.88 14 13 C -0.14 -4.31 6.11 22.62 0.14 -4.17 14 14 S -0.12 -3.03 25.78 -56.49 -1.46 -4.48 14 15 C -0.07 -2.09 9.79 22.41 0.22 -1.87 14 16 C -0.14 -5.33 9.69 22.25 0.22 -5.11 14 17 H 0.27 14.81 8.31 -92.71 -0.77 14.04 14 18 H 0.01 0.46 8.08 -2.39 -0.02 0.44 14 19 H 0.01 0.47 8.08 -2.39 -0.02 0.45 14 20 H 0.12 4.57 8.06 -2.91 -0.02 4.55 14 21 H 0.15 3.81 8.06 -2.91 -0.02 3.79 14 22 H 0.08 1.73 9.07 73.35 0.67 2.40 14 23 H 0.15 3.81 8.06 -2.91 -0.02 3.79 14 24 H 0.12 4.57 8.06 -2.91 -0.02 4.54 14 Total: -1.00 -60.32 233.25 4.47 -55.85 By element: Atomic # 1 Polarization: 1.52 SS G_CDS: 1.86 Total: 3.39 kcal Atomic # 6 Polarization: -47.38 SS G_CDS: 1.75 Total: -45.63 kcal Atomic # 7 Polarization: -55.13 SS G_CDS: 0.28 Total: -54.85 kcal Atomic # 14 Polarization: 43.70 SS G_CDS: 2.03 Total: 45.72 kcal Atomic # 16 Polarization: -3.03 SS G_CDS: -1.46 Total: -4.48 kcal Total: -60.32 4.47 -55.85 kcal The number of atoms in the molecule is 24 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307517484.mol2 24 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.751 kcal (2) G-P(sol) polarization free energy of solvation -60.316 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.566 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.467 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.849 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.099 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds