Wall clock time and date at job start Mon Mar 30 2020 02:12:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86796 * 120.00132 * 2 1 4 4 H 1.48500 * 109.46802 * 239.99699 * 3 2 1 5 5 H 1.48498 * 109.46954 * 359.97438 * 3 2 1 6 6 H 1.48496 * 109.47344 * 119.99497 * 3 2 1 7 7 C 1.37881 * 119.99826 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99752 * 179.97438 * 7 2 1 9 9 C 1.50697 * 120.00103 * 0.02562 * 7 2 1 10 10 N 1.46905 * 109.47066 * 179.97438 * 9 7 2 11 11 C 1.46901 * 110.99870 * 180.02562 * 10 9 7 12 12 H 1.09000 * 110.52148 * 36.32886 * 11 10 9 13 13 C 1.54833 * 110.57896 * 273.54423 * 11 10 9 14 14 C 1.56193 * 103.68626 * 241.44826 * 13 11 10 15 15 H 1.08996 * 116.29457 * 196.86139 * 14 13 11 16 16 C 1.53368 * 104.07290 * 67.52239 * 14 13 11 17 17 C 1.33832 * 107.34225 * 289.26408 * 16 14 13 18 18 C 1.53363 * 108.70673 * 0.51565 * 17 16 14 19 19 H 1.09000 * 116.98878 * 199.53962 * 18 17 16 20 20 C 1.57257 * 99.80030 * 326.31691 * 18 17 16 21 21 H 0.96997 * 120.00392 * 0.02562 * 1 2 3 22 22 H 1.09001 * 109.47558 * 59.99825 * 9 7 2 23 23 H 1.08998 * 109.47216 * 299.99488 * 9 7 2 24 24 H 1.00901 * 110.99869 * 56.04737 * 10 9 7 25 25 H 1.09004 * 110.58530 * 0.02562 * 13 11 10 26 26 H 1.09004 * 110.58260 * 122.90471 * 13 11 10 27 27 H 1.07997 * 125.78112 * 109.91238 * 16 14 13 28 28 H 1.07995 * 125.50370 * 180.16628 * 17 16 14 29 29 H 1.09006 * 112.52155 * 293.36681 * 20 18 17 30 30 H 1.09003 * 112.52449 * 165.50127 * 20 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1029 1.6962 -1.2125 5 1 1.2841 2.7464 -0.0006 6 1 3.1028 1.6964 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2510 -2.4992 0.0005 10 7 2.2056 -3.6158 0.0005 11 6 1.5053 -4.9071 -0.0001 12 1 0.6004 -4.8507 -0.6051 13 6 1.1665 -5.3432 1.4464 14 6 1.9454 -6.6860 1.6196 15 1 1.6369 -7.3194 2.4512 16 6 3.4206 -6.2673 1.5942 17 6 3.7092 -5.8989 0.3403 18 6 2.4459 -6.0417 -0.5174 19 1 2.5849 -6.0989 -1.5970 20 6 1.7911 -7.2917 0.1766 21 1 -0.4850 0.8400 -0.0004 22 1 0.6246 -2.5572 -0.8896 23 1 0.6240 -2.5568 0.8903 24 1 2.8405 -3.5487 0.7819 25 1 1.5181 -4.6007 2.1629 26 1 0.0943 -5.5054 1.5567 27 1 4.0959 -6.2823 2.4369 28 1 4.6719 -5.5528 -0.0058 29 1 2.3779 -8.2001 0.0401 30 1 0.7482 -7.4293 -0.1092 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000307532691.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:12:13 Heat of formation + Delta-G solvation = 28.664343 kcal Electronic energy + Delta-G solvation = -11992.630650 eV Core-core repulsion = 9981.147191 eV Total energy + Delta-G solvation = -2011.483459 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 193.116 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -40.23559 -34.45442 -32.18603 -29.52193 -28.24864 -27.27656 -24.94801 -21.64525 -20.48087 -19.94375 -17.57859 -16.49945 -16.13844 -14.74452 -14.71718 -13.84928 -13.34214 -12.48500 -12.20283 -12.11531 -11.53096 -11.32167 -11.05812 -11.02753 -10.87706 -10.75135 -10.58712 -10.50807 -9.87866 -9.75993 -9.18052 -8.51682 -8.42695 -7.15457 -6.00502 -4.02274 2.51776 3.34943 3.38492 3.41858 4.44822 4.78247 4.81092 5.01031 5.31096 5.35069 5.50282 5.56941 5.62596 5.75538 5.88736 5.96684 6.08682 6.21675 6.24814 6.35604 6.45605 6.63646 6.73943 7.25002 7.31549 7.48756 7.82498 8.17770 8.47661 8.68541 9.07332 9.62420 11.10565 Molecular weight = 193.12amu Principal moments of inertia in cm(-1) A = 0.070054 B = 0.008338 C = 0.008019 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 399.596017 B = 3357.188354 C = 3490.992809 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.899 5.899 2 C 0.055 3.945 3 Si 0.899 3.101 4 H -0.276 1.276 5 H -0.288 1.288 6 H -0.277 1.277 7 C -0.514 4.514 8 H 0.061 0.939 9 C 0.194 3.806 10 N -0.680 5.680 11 C 0.088 3.912 12 H 0.077 0.923 13 C -0.149 4.149 14 C -0.076 4.076 15 H 0.089 0.911 16 C -0.194 4.194 17 C -0.134 4.134 18 C -0.067 4.067 19 H 0.097 0.903 20 C -0.123 4.123 21 H 0.261 0.739 22 H 0.026 0.974 23 H -0.014 1.014 24 H 0.330 0.670 25 H 0.066 0.934 26 H 0.061 0.939 27 H 0.123 0.877 28 H 0.122 0.878 29 H 0.069 0.931 30 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.691 -12.345 1.997 13.039 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.538 5.538 2 C -0.146 4.146 3 Si 0.727 3.273 4 H -0.202 1.202 5 H -0.213 1.213 6 H -0.203 1.203 7 C -0.552 4.552 8 H 0.079 0.921 9 C 0.067 3.933 10 N -0.309 5.309 11 C -0.023 4.023 12 H 0.095 0.905 13 C -0.189 4.189 14 C -0.095 4.095 15 H 0.107 0.893 16 C -0.212 4.212 17 C -0.152 4.152 18 C -0.085 4.085 19 H 0.116 0.884 20 C -0.160 4.160 21 H 0.071 0.929 22 H 0.044 0.956 23 H 0.003 0.997 24 H 0.148 0.852 25 H 0.085 0.915 26 H 0.080 0.920 27 H 0.141 0.859 28 H 0.140 0.860 29 H 0.087 0.913 30 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 3.600 -12.158 1.301 12.746 hybrid contribution 0.073 1.066 1.018 1.475 sum 3.674 -11.092 2.319 11.912 Atomic orbital electron populations 1.69952 1.06066 1.26829 1.50960 1.24989 0.94876 0.99325 0.95404 0.86549 0.79429 0.82727 0.78624 1.20169 1.21336 1.20313 1.21167 0.93448 0.90360 1.50270 0.92122 1.19554 0.90677 0.87421 0.95601 1.60632 1.20515 1.00770 1.49015 1.22711 0.95530 0.90410 0.93682 0.90522 1.23500 0.99372 0.96709 0.99269 1.22822 0.93596 0.96149 0.96922 0.89271 1.24473 0.96023 1.03597 0.97086 1.24486 0.97756 0.97774 0.95188 1.22937 0.93394 0.94001 0.98215 0.88437 1.24051 1.00343 0.97173 0.94481 0.92903 0.95600 0.99664 0.85173 0.91504 0.91977 0.85897 0.85988 0.91262 0.91049 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.29 13.29 55.43 0.74 -26.55 16 2 C 0.06 1.61 5.46 -17.82 -0.10 1.51 16 3 Si 0.90 22.06 29.54 -169.99 -5.02 17.04 16 4 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 5 H -0.29 -6.96 7.11 56.52 0.40 -6.55 16 6 H -0.28 -6.68 7.11 56.52 0.40 -6.27 16 7 C -0.51 -14.90 9.32 -34.44 -0.32 -15.23 16 8 H 0.06 1.73 7.81 -52.49 -0.41 1.32 16 9 C 0.19 5.22 5.29 -4.97 -0.03 5.19 16 10 N -0.68 -15.03 5.86 -105.17 -0.62 -15.65 16 11 C 0.09 1.62 2.94 -65.03 -0.19 1.43 16 12 H 0.08 1.47 7.88 -51.93 -0.41 1.06 16 13 C -0.15 -2.46 5.86 -24.05 -0.14 -2.60 16 14 C -0.08 -1.05 5.20 -86.40 -0.45 -1.50 16 15 H 0.09 1.07 8.14 -51.93 -0.42 0.65 16 16 C -0.19 -2.71 10.30 -34.51 -0.36 -3.07 16 17 C -0.13 -1.99 8.95 -34.52 -0.31 -2.30 16 18 C -0.07 -1.02 5.10 -86.40 -0.44 -1.46 16 19 H 0.10 1.44 8.14 -51.93 -0.42 1.02 16 20 C -0.12 -1.59 6.69 -22.10 -0.15 -1.73 16 21 H 0.26 7.50 8.31 -40.82 -0.34 7.16 16 22 H 0.03 0.75 8.08 -51.93 -0.42 0.33 16 23 H -0.01 -0.41 8.13 -51.93 -0.42 -0.83 16 24 H 0.33 7.19 7.43 -39.29 -0.29 6.90 16 25 H 0.07 1.21 7.62 -51.93 -0.40 0.82 16 26 H 0.06 0.98 8.14 -51.93 -0.42 0.56 16 27 H 0.12 1.53 8.06 -52.49 -0.42 1.11 16 28 H 0.12 1.73 8.06 -52.49 -0.42 1.31 16 29 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 30 H 0.07 0.87 8.14 -51.93 -0.42 0.45 16 LS Contribution 247.20 15.07 3.73 3.73 Total: -1.00 -29.98 247.20 -8.10 -38.07 By element: Atomic # 1 Polarization: 7.56 SS G_CDS: -4.44 Total: 3.11 kcal Atomic # 6 Polarization: -17.27 SS G_CDS: -2.48 Total: -19.75 kcal Atomic # 7 Polarization: -42.32 SS G_CDS: 0.12 Total: -42.20 kcal Atomic # 14 Polarization: 22.06 SS G_CDS: -5.02 Total: 17.04 kcal Total LS contribution 3.73 Total: 3.73 kcal Total: -29.98 -8.10 -38.07 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307532691.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.738 kcal (2) G-P(sol) polarization free energy of solvation -29.976 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.762 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.097 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.074 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.664 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds