Wall clock time and date at job start Mon Mar 30 2020 02:12:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86796 * 120.00132 * 2 1 4 4 H 1.48500 * 109.46802 * 239.99699 * 3 2 1 5 5 H 1.48498 * 109.46954 * 359.97438 * 3 2 1 6 6 H 1.48496 * 109.47344 * 119.99497 * 3 2 1 7 7 C 1.37881 * 119.99826 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99752 * 179.97438 * 7 2 1 9 9 C 1.50697 * 120.00103 * 0.02562 * 7 2 1 10 10 N 1.46905 * 109.47066 * 179.97438 * 9 7 2 11 11 C 1.46901 * 110.99870 * 180.02562 * 10 9 7 12 12 H 1.09000 * 110.52148 * 36.32886 * 11 10 9 13 13 C 1.54833 * 110.57896 * 273.54423 * 11 10 9 14 14 C 1.56193 * 103.68626 * 241.44826 * 13 11 10 15 15 H 1.08996 * 116.29457 * 196.86139 * 14 13 11 16 16 C 1.53368 * 104.07290 * 67.52239 * 14 13 11 17 17 C 1.33832 * 107.34225 * 289.26408 * 16 14 13 18 18 C 1.53363 * 108.70673 * 0.51565 * 17 16 14 19 19 H 1.09000 * 116.98878 * 199.53962 * 18 17 16 20 20 C 1.57257 * 99.80030 * 326.31691 * 18 17 16 21 21 H 0.96997 * 120.00392 * 0.02562 * 1 2 3 22 22 H 1.09001 * 109.47558 * 59.99825 * 9 7 2 23 23 H 1.08998 * 109.47216 * 299.99488 * 9 7 2 24 24 H 1.00901 * 110.99869 * 56.04737 * 10 9 7 25 25 H 1.09004 * 110.58530 * 0.02562 * 13 11 10 26 26 H 1.09004 * 110.58260 * 122.90471 * 13 11 10 27 27 H 1.07997 * 125.78112 * 109.91238 * 16 14 13 28 28 H 1.07995 * 125.50370 * 180.16628 * 17 16 14 29 29 H 1.09006 * 112.52155 * 293.36681 * 20 18 17 30 30 H 1.09003 * 112.52449 * 165.50127 * 20 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1029 1.6962 -1.2125 5 1 1.2841 2.7464 -0.0006 6 1 3.1028 1.6964 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2510 -2.4992 0.0005 10 7 2.2056 -3.6158 0.0005 11 6 1.5053 -4.9071 -0.0001 12 1 0.6004 -4.8507 -0.6051 13 6 1.1665 -5.3432 1.4464 14 6 1.9454 -6.6860 1.6196 15 1 1.6369 -7.3194 2.4512 16 6 3.4206 -6.2673 1.5942 17 6 3.7092 -5.8989 0.3403 18 6 2.4459 -6.0417 -0.5174 19 1 2.5849 -6.0989 -1.5970 20 6 1.7911 -7.2917 0.1766 21 1 -0.4850 0.8400 -0.0004 22 1 0.6246 -2.5572 -0.8896 23 1 0.6240 -2.5568 0.8903 24 1 2.8405 -3.5487 0.7819 25 1 1.5181 -4.6007 2.1629 26 1 0.0943 -5.5054 1.5567 27 1 4.0959 -6.2823 2.4369 28 1 4.6719 -5.5528 -0.0058 29 1 2.3779 -8.2001 0.0401 30 1 0.7482 -7.4293 -0.1092 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000307532691.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:12:13 Heat of formation + Delta-G solvation = 9.755080 kcal Electronic energy + Delta-G solvation = -11993.450618 eV Core-core repulsion = 9981.147191 eV Total energy + Delta-G solvation = -2012.303427 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 193.116 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -41.48834 -36.35525 -34.25991 -30.85526 -29.64004 -28.83317 -26.67868 -23.69239 -21.90063 -21.10407 -18.92049 -18.39691 -17.50314 -16.70935 -16.17226 -15.58559 -14.92915 -14.37076 -13.83735 -13.49442 -13.27654 -13.02299 -12.72375 -12.43020 -12.23814 -12.17840 -12.12692 -11.94980 -11.71026 -11.29883 -11.07643 -10.67519 -9.70730 -8.95995 -8.23972 -6.35727 1.37868 1.39067 1.43101 1.51180 2.38540 3.08680 3.45447 3.62091 3.78540 3.96616 4.23316 4.31304 4.40588 4.49704 4.63220 4.78294 4.88923 4.91755 5.06347 5.11856 5.15255 5.26906 5.28023 5.37191 5.56556 5.62674 6.02073 6.12328 6.48392 6.73716 6.89346 7.35368 8.87413 Molecular weight = 193.12amu Principal moments of inertia in cm(-1) A = 0.070054 B = 0.008338 C = 0.008019 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 399.596017 B = 3357.188354 C = 3490.992809 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.934 5.934 2 C 0.000 4.000 3 Si 0.974 3.026 4 H -0.268 1.268 5 H -0.281 1.281 6 H -0.266 1.266 7 C -0.538 4.538 8 H 0.062 0.938 9 C 0.211 3.789 10 N -0.677 5.677 11 C 0.076 3.924 12 H 0.059 0.941 13 C -0.148 4.148 14 C -0.069 4.069 15 H 0.115 0.885 16 C -0.186 4.186 17 C -0.153 4.153 18 C -0.067 4.067 19 H 0.100 0.900 20 C -0.110 4.110 21 H 0.265 0.735 22 H -0.005 1.005 23 H -0.042 1.042 24 H 0.333 0.667 25 H 0.045 0.955 26 H 0.064 0.936 27 H 0.141 0.859 28 H 0.126 0.874 29 H 0.092 0.908 30 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.905 -13.058 2.511 14.173 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.574 5.574 2 C -0.198 4.198 3 Si 0.798 3.202 4 H -0.193 1.193 5 H -0.206 1.206 6 H -0.191 1.191 7 C -0.576 4.576 8 H 0.081 0.919 9 C 0.083 3.917 10 N -0.306 5.306 11 C -0.035 4.035 12 H 0.077 0.923 13 C -0.187 4.187 14 C -0.087 4.087 15 H 0.134 0.866 16 C -0.204 4.204 17 C -0.171 4.171 18 C -0.086 4.086 19 H 0.118 0.882 20 C -0.148 4.148 21 H 0.074 0.926 22 H 0.014 0.986 23 H -0.024 1.024 24 H 0.151 0.849 25 H 0.064 0.936 26 H 0.083 0.917 27 H 0.159 0.841 28 H 0.143 0.857 29 H 0.110 0.890 30 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges 4.823 -12.903 1.816 13.894 hybrid contribution -0.346 1.247 0.858 1.553 sum 4.477 -11.656 2.674 12.769 Atomic orbital electron populations 1.70085 1.07829 1.28093 1.51401 1.25983 0.95827 1.03456 0.94508 0.85365 0.78116 0.77527 0.79165 1.19289 1.20596 1.19104 1.21527 0.93730 0.91566 1.50808 0.91936 1.19172 0.90667 0.89043 0.92794 1.60547 1.19773 1.01155 1.49164 1.22867 0.95682 0.89717 0.95192 0.92315 1.23394 1.00085 0.98111 0.97128 1.22903 0.92759 0.94629 0.98416 0.86649 1.24754 0.96337 1.02120 0.97195 1.24566 0.97788 0.99056 0.95676 1.22941 0.93267 0.93687 0.98710 0.88225 1.24023 1.00977 0.96694 0.93081 0.92579 0.98643 1.02400 0.84911 0.93582 0.91682 0.84096 0.85659 0.88963 0.90315 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -57.74 13.29 21.45 0.28 -57.45 16 2 C 0.00 0.03 5.46 84.66 0.46 0.49 16 3 Si 0.97 45.18 29.54 68.60 2.03 47.21 16 4 H -0.27 -12.02 7.11 99.48 0.71 -11.31 16 5 H -0.28 -12.61 7.11 99.48 0.71 -11.90 16 6 H -0.27 -11.80 7.11 99.48 0.71 -11.10 16 7 C -0.54 -31.78 9.32 25.60 0.24 -31.54 16 8 H 0.06 3.58 7.81 -2.91 -0.02 3.56 16 9 C 0.21 11.81 5.29 85.55 0.45 12.27 16 10 N -0.68 -30.64 5.86 -486.64 -2.85 -33.49 16 11 C 0.08 2.82 2.94 46.65 0.14 2.96 16 12 H 0.06 2.35 7.88 -2.39 -0.02 2.33 16 13 C -0.15 -4.82 5.86 32.33 0.19 -4.63 16 14 C -0.07 -1.70 5.20 -8.06 -0.04 -1.74 16 15 H 0.12 2.32 8.14 -2.39 -0.02 2.30 16 16 C -0.19 -4.74 10.30 25.55 0.26 -4.48 16 17 C -0.15 -4.28 8.95 25.55 0.23 -4.05 16 18 C -0.07 -1.97 5.10 -8.06 -0.04 -2.01 16 19 H 0.10 2.85 8.14 -2.39 -0.02 2.83 16 20 C -0.11 -2.54 6.69 33.59 0.22 -2.32 16 21 H 0.27 15.36 8.31 -92.71 -0.77 14.59 16 22 H 0.00 -0.28 8.08 -2.39 -0.02 -0.30 16 23 H -0.04 -2.50 8.13 -2.39 -0.02 -2.52 16 24 H 0.33 14.70 7.43 -89.69 -0.67 14.03 16 25 H 0.05 1.68 7.62 -2.39 -0.02 1.66 16 26 H 0.06 2.05 8.14 -2.38 -0.02 2.03 16 27 H 0.14 3.06 8.06 -2.91 -0.02 3.04 16 28 H 0.13 3.38 8.06 -2.91 -0.02 3.36 16 29 H 0.09 1.78 8.14 -2.38 -0.02 1.76 16 30 H 0.08 1.72 8.14 -2.39 -0.02 1.70 16 Total: -1.00 -64.73 247.20 2.01 -62.72 By element: Atomic # 1 Polarization: 15.63 SS G_CDS: 0.44 Total: 16.07 kcal Atomic # 6 Polarization: -37.17 SS G_CDS: 2.11 Total: -35.06 kcal Atomic # 7 Polarization: -88.37 SS G_CDS: -2.57 Total: -90.94 kcal Atomic # 14 Polarization: 45.18 SS G_CDS: 2.03 Total: 47.21 kcal Total: -64.73 2.01 -62.72 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307532691.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.472 kcal (2) G-P(sol) polarization free energy of solvation -64.731 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.741 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.015 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.717 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.755 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds