Wall clock time and date at job start Mon Mar 30 2020 02:08:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86801 * 119.99540 * 2 1 4 4 H 1.48501 * 109.46922 * 180.02562 * 3 2 1 5 5 H 1.48494 * 109.47454 * 299.99848 * 3 2 1 6 6 H 1.48502 * 109.47310 * 60.00110 * 3 2 1 7 7 C 1.37872 * 120.00401 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99955 * 186.91068 * 7 2 1 9 9 C 1.50703 * 120.00112 * 6.90810 * 7 2 1 10 10 C 1.53001 * 115.54474 * 64.44561 * 9 7 2 11 11 N 1.46898 * 109.47235 * 39.37133 * 10 9 7 12 12 C 1.48225 * 110.99868 * 62.32049 * 11 10 9 13 13 C 1.51119 * 105.36240 * 144.89970 * 12 11 10 14 14 C 1.30961 * 109.45518 * 343.01807 * 13 12 11 15 15 C 1.48232 * 110.99576 * 175.95560 * 11 10 9 16 16 C 1.52996 * 117.52010 * 210.14418 * 9 7 2 17 17 C 1.52997 * 117.49788 * 278.77556 * 9 7 2 18 18 H 0.97000 * 120.00763 * 5.01263 * 1 2 3 19 19 H 1.08998 * 109.46596 * 159.37073 * 10 9 7 20 20 H 1.08996 * 109.47041 * 279.36745 * 10 9 7 21 21 H 1.09008 * 110.26453 * 263.86576 * 12 11 10 22 22 H 1.08999 * 110.27073 * 25.92421 * 12 11 10 23 23 H 1.08001 * 125.27686 * 163.04530 * 13 12 11 24 24 H 1.08002 * 125.27209 * 179.97438 * 14 13 12 25 25 H 1.09000 * 110.27126 * 334.06798 * 15 11 10 26 26 H 1.08998 * 110.26878 * 96.13239 * 15 11 10 27 27 H 1.08998 * 117.50019 * 214.96836 * 16 9 7 28 28 H 1.09002 * 117.49952 * 359.97438 * 16 9 7 29 29 H 1.08995 * 117.50237 * 359.97438 * 17 9 7 30 30 H 1.09007 * 117.49447 * 144.99629 * 17 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 3.7090 1.3465 -0.0006 5 1 1.8903 2.3965 -1.2124 6 1 1.8902 2.3965 1.2125 7 6 2.0046 -1.1940 -0.0005 8 1 3.0787 -1.1973 0.1120 9 6 1.2594 -2.4943 -0.1581 10 6 0.5490 -2.6894 -1.4991 11 7 1.3943 -2.1679 -2.5814 12 6 2.6738 -2.9118 -2.6616 13 6 3.0100 -2.9726 -4.1336 14 6 1.9399 -2.6985 -4.8371 15 6 0.7811 -2.4269 -3.9059 16 6 1.8514 -3.7344 0.5147 17 6 0.5917 -3.0813 1.0871 18 1 -0.4851 0.8368 -0.0734 19 1 0.3648 -3.7514 -1.6615 20 1 -0.4000 -2.1535 -1.4888 21 1 3.4545 -2.3799 -2.1176 22 1 2.5514 -3.9179 -2.2603 23 1 3.9820 -3.2064 -4.5423 24 1 1.8930 -2.6704 -5.9158 25 1 0.1258 -3.2964 -3.8551 26 1 0.2240 -1.5523 -4.2416 27 1 1.7347 -4.6892 0.0021 28 1 2.7803 -3.6099 1.0712 29 1 0.6917 -2.5272 2.0204 30 1 -0.3538 -3.6065 0.9509 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000404030075.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:08:31 Heat of formation + Delta-G solvation = 62.364296 kcal Electronic energy + Delta-G solvation = -12366.729601 eV Core-core repulsion = 10356.707481 eV Total energy + Delta-G solvation = -2010.022120 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 193.116 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -38.76925 -36.14251 -31.80470 -31.15486 -27.69140 -25.61623 -24.72970 -21.11120 -20.72851 -19.18446 -18.44566 -16.19557 -15.32563 -14.54703 -14.42551 -13.69843 -13.14423 -12.62422 -12.13637 -11.95984 -11.70888 -11.26563 -11.10606 -10.81709 -10.65241 -10.50009 -10.37218 -10.03548 -9.29743 -8.99842 -8.74602 -8.34741 -7.93012 -7.30306 -5.86744 -3.86107 2.60371 3.41459 3.49347 3.52689 4.57750 4.89194 5.24172 5.30854 5.37979 5.55194 5.93963 6.03044 6.05314 6.18777 6.24765 6.35215 6.52418 6.61673 6.65860 6.73950 6.82606 7.03604 7.12117 7.25184 7.45867 7.46491 7.82901 8.05045 8.11584 8.59397 9.08305 9.76796 11.24509 Molecular weight = 193.12amu Principal moments of inertia in cm(-1) A = 0.030004 B = 0.016022 C = 0.012665 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 932.981253 B = 1747.212827 C = 2210.275118 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.882 5.882 2 C 0.083 3.917 3 Si 0.885 3.115 4 H -0.275 1.275 5 H -0.284 1.284 6 H -0.290 1.290 7 C -0.467 4.467 8 H 0.055 0.945 9 C 0.057 3.943 10 C 0.096 3.904 11 N -0.462 5.462 12 C 0.063 3.937 13 C -0.168 4.168 14 C -0.179 4.179 15 C 0.048 3.952 16 C -0.216 4.216 17 C -0.177 4.177 18 H 0.256 0.744 19 H -0.001 1.001 20 H 0.082 0.918 21 H 0.089 0.911 22 H 0.046 0.954 23 H 0.125 0.875 24 H 0.124 0.876 25 H 0.042 0.958 26 H 0.077 0.923 27 H 0.061 0.939 28 H 0.075 0.925 29 H 0.079 0.921 30 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.302 -5.242 -5.977 8.277 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.519 5.519 2 C -0.120 4.120 3 Si 0.713 3.287 4 H -0.200 1.200 5 H -0.211 1.211 6 H -0.217 1.217 7 C -0.505 4.505 8 H 0.073 0.927 9 C 0.056 3.944 10 C -0.032 4.032 11 N -0.185 5.185 12 C -0.065 4.065 13 C -0.187 4.187 14 C -0.198 4.198 15 C -0.080 4.080 16 C -0.253 4.253 17 C -0.215 4.215 18 H 0.065 0.935 19 H 0.017 0.983 20 H 0.100 0.900 21 H 0.107 0.893 22 H 0.064 0.936 23 H 0.143 0.857 24 H 0.142 0.858 25 H 0.060 0.940 26 H 0.095 0.905 27 H 0.079 0.921 28 H 0.094 0.906 29 H 0.098 0.902 30 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 2.197 -4.523 -5.771 7.655 hybrid contribution 0.240 0.005 -0.234 0.335 sum 2.437 -4.519 -6.005 7.901 Atomic orbital electron populations 1.69978 1.05883 1.26275 1.49773 1.24755 0.94560 0.98359 0.94301 0.86671 0.80295 0.84559 0.77152 1.19978 1.21054 1.21657 1.20186 0.92295 0.88694 1.49331 0.92721 1.18850 0.96257 0.91204 0.88040 1.21806 0.96969 0.93127 0.91257 1.65644 1.02387 1.50345 1.00130 1.21965 0.95215 0.96715 0.92596 1.23739 0.98208 1.00026 0.96703 1.23524 0.95837 1.01692 0.98726 1.22105 0.95701 0.99525 0.90640 1.22997 0.97516 0.97156 1.07617 1.22709 0.93332 1.04306 1.01140 0.93455 0.98315 0.89965 0.89334 0.93649 0.85746 0.85832 0.93999 0.90521 0.92058 0.90632 0.90202 0.92109 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -25.28 12.73 55.43 0.71 -24.57 16 2 C 0.08 2.30 5.38 -17.82 -0.10 2.20 16 3 Si 0.88 21.87 29.55 -169.99 -5.02 16.85 16 4 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 5 H -0.28 -7.08 7.11 56.52 0.40 -6.67 16 6 H -0.29 -7.14 7.11 56.52 0.40 -6.74 16 7 C -0.47 -12.75 7.67 -34.44 -0.26 -13.01 16 8 H 0.05 1.51 7.82 -52.49 -0.41 1.10 16 9 C 0.06 1.41 0.96 -155.66 -0.15 1.26 16 10 C 0.10 2.24 4.47 -3.82 -0.02 2.23 16 11 N -0.46 -10.19 4.99 -234.68 -1.17 -11.37 16 12 C 0.06 1.23 5.66 -4.04 -0.02 1.21 16 13 C -0.17 -2.74 10.95 -35.81 -0.39 -3.13 16 14 C -0.18 -2.85 10.95 -35.81 -0.39 -3.24 16 15 C 0.05 0.89 6.66 -4.03 -0.03 0.86 16 16 C -0.22 -4.72 9.73 -26.73 -0.26 -4.98 16 17 C -0.18 -4.15 9.95 -26.73 -0.27 -4.42 16 18 H 0.26 7.08 8.32 -40.82 -0.34 6.74 16 19 H 0.00 -0.02 7.69 -51.93 -0.40 -0.42 16 20 H 0.08 2.09 7.78 -51.93 -0.40 1.69 16 21 H 0.09 1.86 7.90 -51.92 -0.41 1.45 16 22 H 0.05 0.88 7.58 -51.93 -0.39 0.49 16 23 H 0.12 1.67 8.06 -52.49 -0.42 1.24 16 24 H 0.12 1.59 8.06 -52.49 -0.42 1.17 16 25 H 0.04 0.74 7.69 -51.93 -0.40 0.34 16 26 H 0.08 1.41 8.14 -51.93 -0.42 0.99 16 27 H 0.06 1.22 8.08 -51.93 -0.42 0.81 16 28 H 0.08 1.63 8.14 -51.93 -0.42 1.21 16 29 H 0.08 1.96 8.14 -51.93 -0.42 1.54 16 30 H 0.06 1.34 8.14 -51.92 -0.42 0.92 16 LS Contribution 252.51 15.07 3.81 3.81 Total: -1.00 -28.71 252.51 -8.08 -36.79 By element: Atomic # 1 Polarization: 4.02 SS G_CDS: -4.51 Total: -0.49 kcal Atomic # 6 Polarization: -19.13 SS G_CDS: -1.89 Total: -21.02 kcal Atomic # 7 Polarization: -35.47 SS G_CDS: -0.47 Total: -35.93 kcal Atomic # 14 Polarization: 21.87 SS G_CDS: -5.02 Total: 16.85 kcal Total LS contribution 3.81 Total: 3.81 kcal Total: -28.71 -8.08 -36.79 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000404030075.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 99.151 kcal (2) G-P(sol) polarization free energy of solvation -28.709 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 70.441 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.077 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.787 kcal (6) G-S(sol) free energy of system = (1) + (5) 62.364 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds