Wall clock time and date at job start Mon Mar 30 2020 02:08:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86801 * 119.99540 * 2 1 4 4 H 1.48501 * 109.46922 * 180.02562 * 3 2 1 5 5 H 1.48494 * 109.47454 * 299.99848 * 3 2 1 6 6 H 1.48502 * 109.47310 * 60.00110 * 3 2 1 7 7 C 1.37872 * 120.00401 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99955 * 186.91068 * 7 2 1 9 9 C 1.50703 * 120.00112 * 6.90810 * 7 2 1 10 10 C 1.53001 * 115.54474 * 64.44561 * 9 7 2 11 11 N 1.46898 * 109.47235 * 39.37133 * 10 9 7 12 12 C 1.48225 * 110.99868 * 62.32049 * 11 10 9 13 13 C 1.51119 * 105.36240 * 144.89970 * 12 11 10 14 14 C 1.30961 * 109.45518 * 343.01807 * 13 12 11 15 15 C 1.48232 * 110.99576 * 175.95560 * 11 10 9 16 16 C 1.52996 * 117.52010 * 210.14418 * 9 7 2 17 17 C 1.52997 * 117.49788 * 278.77556 * 9 7 2 18 18 H 0.97000 * 120.00763 * 5.01263 * 1 2 3 19 19 H 1.08998 * 109.46596 * 159.37073 * 10 9 7 20 20 H 1.08996 * 109.47041 * 279.36745 * 10 9 7 21 21 H 1.09008 * 110.26453 * 263.86576 * 12 11 10 22 22 H 1.08999 * 110.27073 * 25.92421 * 12 11 10 23 23 H 1.08001 * 125.27686 * 163.04530 * 13 12 11 24 24 H 1.08002 * 125.27209 * 179.97438 * 14 13 12 25 25 H 1.09000 * 110.27126 * 334.06798 * 15 11 10 26 26 H 1.08998 * 110.26878 * 96.13239 * 15 11 10 27 27 H 1.08998 * 117.50019 * 214.96836 * 16 9 7 28 28 H 1.09002 * 117.49952 * 359.97438 * 16 9 7 29 29 H 1.08995 * 117.50237 * 359.97438 * 17 9 7 30 30 H 1.09007 * 117.49447 * 144.99629 * 17 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 3.7090 1.3465 -0.0006 5 1 1.8903 2.3965 -1.2124 6 1 1.8902 2.3965 1.2125 7 6 2.0046 -1.1940 -0.0005 8 1 3.0787 -1.1973 0.1120 9 6 1.2594 -2.4943 -0.1581 10 6 0.5490 -2.6894 -1.4991 11 7 1.3943 -2.1679 -2.5814 12 6 2.6738 -2.9118 -2.6616 13 6 3.0100 -2.9726 -4.1336 14 6 1.9399 -2.6985 -4.8371 15 6 0.7811 -2.4269 -3.9059 16 6 1.8514 -3.7344 0.5147 17 6 0.5917 -3.0813 1.0871 18 1 -0.4851 0.8368 -0.0734 19 1 0.3648 -3.7514 -1.6615 20 1 -0.4000 -2.1535 -1.4888 21 1 3.4545 -2.3799 -2.1176 22 1 2.5514 -3.9179 -2.2603 23 1 3.9820 -3.2064 -4.5423 24 1 1.8930 -2.6704 -5.9158 25 1 0.1258 -3.2964 -3.8551 26 1 0.2240 -1.5523 -4.2416 27 1 1.7347 -4.6892 0.0021 28 1 2.7803 -3.6099 1.0712 29 1 0.6917 -2.5272 2.0204 30 1 -0.3538 -3.6065 0.9509 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000404030075.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:08:30 Heat of formation + Delta-G solvation = 44.990733 kcal Electronic energy + Delta-G solvation = -12367.482975 eV Core-core repulsion = 10356.707481 eV Total energy + Delta-G solvation = -2010.775494 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 193.116 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -40.32019 -37.92468 -33.91025 -32.68641 -29.15027 -27.58300 -26.53294 -22.94230 -22.30466 -20.97690 -19.91149 -18.05012 -16.90288 -16.48075 -16.14502 -15.52332 -14.87556 -14.26342 -13.88417 -13.59004 -13.23483 -12.99187 -12.89557 -12.80165 -12.34958 -12.30264 -11.98794 -11.93152 -11.17546 -10.92117 -10.34712 -10.19709 -9.88616 -8.87814 -7.98542 -6.01539 1.36025 1.42881 1.46750 1.55000 2.52673 3.22806 3.41891 3.56929 3.94026 3.99353 4.34403 4.42318 4.60399 4.65048 4.69564 4.73979 4.79988 4.91574 4.96522 5.09376 5.18685 5.30349 5.50935 5.57208 5.61140 5.90664 5.96121 6.27759 6.38324 6.58948 6.98517 7.62832 9.12029 Molecular weight = 193.12amu Principal moments of inertia in cm(-1) A = 0.030004 B = 0.016022 C = 0.012665 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 932.981253 B = 1747.212827 C = 2210.275118 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.908 5.908 2 C 0.040 3.960 3 Si 0.936 3.064 4 H -0.271 1.271 5 H -0.286 1.286 6 H -0.288 1.288 7 C -0.471 4.471 8 H 0.043 0.957 9 C 0.029 3.971 10 C 0.111 3.889 11 N -0.496 5.496 12 C 0.062 3.938 13 C -0.170 4.170 14 C -0.169 4.169 15 C 0.042 3.958 16 C -0.188 4.188 17 C -0.183 4.183 18 H 0.254 0.746 19 H 0.013 0.987 20 H 0.050 0.950 21 H 0.066 0.934 22 H 0.046 0.954 23 H 0.159 0.841 24 H 0.162 0.838 25 H 0.050 0.950 26 H 0.071 0.929 27 H 0.086 0.914 28 H 0.077 0.923 29 H 0.062 0.938 30 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.228 -6.005 -7.275 9.970 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.547 5.547 2 C -0.160 4.160 3 Si 0.764 3.236 4 H -0.196 1.196 5 H -0.212 1.212 6 H -0.214 1.214 7 C -0.509 4.509 8 H 0.061 0.939 9 C 0.028 3.972 10 C -0.017 4.017 11 N -0.219 5.219 12 C -0.065 4.065 13 C -0.189 4.189 14 C -0.187 4.187 15 C -0.086 4.086 16 C -0.225 4.225 17 C -0.221 4.221 18 H 0.063 0.937 19 H 0.030 0.970 20 H 0.069 0.931 21 H 0.084 0.916 22 H 0.064 0.936 23 H 0.176 0.824 24 H 0.179 0.821 25 H 0.068 0.932 26 H 0.089 0.911 27 H 0.104 0.896 28 H 0.096 0.904 29 H 0.080 0.920 30 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 3.136 -5.292 -7.067 9.369 hybrid contribution -0.053 0.220 0.192 0.297 sum 3.083 -5.071 -6.875 9.082 Atomic orbital electron populations 1.70074 1.06868 1.26631 1.51116 1.25331 0.95199 1.00914 0.94512 0.85860 0.79402 0.81470 0.76908 1.19558 1.21232 1.21415 1.20368 0.91880 0.90170 1.48492 0.93866 1.18960 0.97572 0.91542 0.89121 1.21504 0.95637 0.93335 0.91234 1.65487 1.03502 1.51602 1.01313 1.21897 0.93497 0.95999 0.95118 1.23844 0.99985 1.00671 0.94354 1.23714 0.94162 1.00712 1.00112 1.22178 0.96989 0.99710 0.89728 1.22978 0.96603 0.96986 1.05929 1.22656 0.94823 1.04708 0.99904 0.93705 0.96952 0.93109 0.91604 0.93595 0.82375 0.82105 0.93175 0.91102 0.89585 0.90442 0.91969 0.90953 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -52.85 12.73 21.45 0.27 -52.57 16 2 C 0.04 2.23 5.38 84.65 0.46 2.69 16 3 Si 0.94 45.19 29.55 68.60 2.03 47.22 16 4 H -0.27 -12.77 7.11 99.48 0.71 -12.06 16 5 H -0.29 -13.80 7.11 99.48 0.71 -13.09 16 6 H -0.29 -13.69 7.11 99.48 0.71 -12.98 16 7 C -0.47 -25.86 7.67 25.60 0.20 -25.66 16 8 H 0.04 2.41 7.82 -2.91 -0.02 2.38 16 9 C 0.03 1.41 0.96 -52.93 -0.05 1.36 16 10 C 0.11 5.16 4.47 86.30 0.39 5.55 16 11 N -0.50 -21.57 4.99 -896.38 -4.47 -26.05 16 12 C 0.06 2.37 5.66 85.43 0.48 2.85 16 13 C -0.17 -5.02 10.95 25.82 0.28 -4.73 16 14 C -0.17 -4.80 10.95 25.82 0.28 -4.52 16 15 C 0.04 1.47 6.66 85.43 0.57 2.04 16 16 C -0.19 -7.94 9.73 30.59 0.30 -7.65 16 17 C -0.18 -8.53 9.95 30.59 0.30 -8.22 16 18 H 0.25 14.28 8.32 -92.71 -0.77 13.51 16 19 H 0.01 0.53 7.69 -2.39 -0.02 0.51 16 20 H 0.05 2.63 7.78 -2.39 -0.02 2.61 16 21 H 0.07 2.75 7.90 -2.38 -0.02 2.73 16 22 H 0.05 1.70 7.58 -2.39 -0.02 1.69 16 23 H 0.16 3.57 8.06 -2.91 -0.02 3.54 16 24 H 0.16 3.38 8.06 -2.91 -0.02 3.36 16 25 H 0.05 1.68 7.69 -2.39 -0.02 1.66 16 26 H 0.07 2.55 8.14 -2.39 -0.02 2.53 16 27 H 0.09 3.21 8.08 -2.39 -0.02 3.19 16 28 H 0.08 3.23 8.14 -2.39 -0.02 3.21 16 29 H 0.06 3.08 8.14 -2.39 -0.02 3.06 16 30 H 0.07 3.16 8.14 -2.38 -0.02 3.14 16 Total: -1.00 -60.83 252.51 2.13 -58.71 By element: Atomic # 1 Polarization: 7.90 SS G_CDS: 1.09 Total: 8.99 kcal Atomic # 6 Polarization: -39.50 SS G_CDS: 3.21 Total: -36.29 kcal Atomic # 7 Polarization: -74.42 SS G_CDS: -4.20 Total: -78.62 kcal Atomic # 14 Polarization: 45.19 SS G_CDS: 2.03 Total: 47.22 kcal Total: -60.83 2.13 -58.71 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000404030075.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 103.696 kcal (2) G-P(sol) polarization free energy of solvation -60.830 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 42.866 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.125 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.705 kcal (6) G-S(sol) free energy of system = (1) + (5) 44.991 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds