Wall clock time and date at job start Mon Mar 30 2020 02:44:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30862 * 1 3 3 Si 1.86803 * 120.00291 * 2 1 4 4 H 1.48500 * 109.46947 * 0.02562 * 3 2 1 5 5 H 1.48498 * 109.46859 * 120.00140 * 3 2 1 6 6 H 1.48501 * 109.47170 * 239.99983 * 3 2 1 7 7 C 1.39941 * 119.99614 * 180.02562 * 2 1 3 8 8 H 1.08009 * 119.99561 * 206.52525 * 7 2 1 9 9 C 1.41149 * 120.00200 * 26.52478 * 7 2 1 10 10 C 1.40723 * 120.28821 * 25.26787 * 9 7 2 11 11 C 1.36486 * 119.92690 * 179.97438 * 10 9 7 12 12 C 1.38823 * 120.54052 * 0.02562 * 11 10 9 13 13 C 1.38309 * 120.59178 * 359.97438 * 12 11 10 14 14 C 1.38449 * 120.04764 * 359.74123 * 13 12 11 15 15 O 1.35642 * 120.26131 * 180.25632 * 14 13 12 16 16 C 1.42896 * 117.00365 * 0.28192 * 15 14 13 17 17 O 1.42894 * 109.47618 * 74.99673 * 16 15 14 18 18 H 0.97002 * 120.00148 * 185.88788 * 1 2 3 19 19 H 1.07996 * 120.03392 * 359.94804 * 10 9 7 20 20 H 1.07998 * 119.72863 * 179.97438 * 11 10 9 21 21 H 1.07997 * 119.70613 * 179.97438 * 12 11 10 22 22 H 1.08001 * 119.97284 * 180.02562 * 13 12 11 23 23 H 1.08998 * 109.46810 * 194.99948 * 16 15 14 24 24 H 1.09005 * 109.46822 * 314.99354 * 16 15 14 25 25 H 0.96695 * 114.00012 * 180.02562 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3086 0.0000 0.0000 3 14 2.2427 1.6177 0.0000 4 1 1.2777 2.7465 0.0006 5 1 3.0965 1.6963 1.2125 6 1 3.0965 1.6963 -1.2125 7 6 2.0082 -1.2120 -0.0005 8 1 3.0031 -1.2614 0.4172 9 6 1.4139 -2.3698 -0.5469 10 6 0.4141 -2.2574 -1.5309 11 6 -0.1553 -3.3819 -2.0546 12 6 0.2431 -4.6402 -1.6244 13 6 1.2237 -4.7761 -0.6585 14 6 1.8219 -3.6520 -0.1149 15 8 2.7877 -3.7803 0.8288 16 6 3.1461 -5.1090 1.2138 17 8 3.9390 -5.7054 0.1855 18 1 -0.4850 -0.8356 0.0862 19 1 0.0974 -1.2825 -1.8709 20 1 -0.9226 -3.2919 -2.8092 21 1 -0.2168 -5.5209 -2.0476 22 1 1.5263 -5.7599 -0.3315 23 1 3.7182 -5.0766 2.1410 24 1 2.2426 -5.6997 1.3647 25 1 4.2186 -6.6105 0.3796 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000584610357.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:44:02 Heat of formation + Delta-G solvation = -99.222937 kcal Electronic energy + Delta-G solvation = -11914.969856 eV Core-core repulsion = 9664.389031 eV Total energy + Delta-G solvation = -2250.580825 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 194.073 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -40.71099 -38.50390 -36.60293 -35.72473 -31.40991 -30.67703 -27.12806 -26.59797 -22.90735 -22.45529 -20.02407 -18.80558 -18.52776 -17.16099 -16.53461 -15.74426 -15.60938 -15.14692 -14.85961 -14.38672 -13.79436 -13.49863 -13.32884 -12.75371 -12.42086 -12.24168 -11.94122 -11.75828 -11.36698 -11.03420 -10.80978 -9.61533 -9.33340 -8.94048 -6.35601 0.82894 0.92409 1.50258 1.63604 1.81132 2.34197 2.56650 2.66277 3.44491 3.58213 4.05572 4.20637 4.32191 4.38445 4.56606 4.90920 5.12322 5.25713 5.49995 5.73368 5.79792 5.96419 6.11752 6.30469 6.43444 6.83010 6.90311 7.12496 8.04470 Molecular weight = 194.07amu Principal moments of inertia in cm(-1) A = 0.037887 B = 0.013417 C = 0.010465 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 738.872080 B = 2086.333148 C = 2675.003968 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.816 5.816 2 C 0.004 3.996 3 Si 1.117 2.883 4 H -0.266 1.266 5 H -0.260 1.260 6 H -0.266 1.266 7 C -0.546 4.546 8 H 0.063 0.937 9 C 0.049 3.951 10 C -0.220 4.220 11 C -0.113 4.113 12 C -0.220 4.220 13 C -0.156 4.156 14 C -0.012 4.012 15 O -0.325 6.325 16 C 0.234 3.766 17 O -0.610 6.610 18 H 0.282 0.718 19 H 0.095 0.905 20 H 0.120 0.880 21 H 0.129 0.871 22 H 0.129 0.871 23 H 0.119 0.881 24 H 0.058 0.942 25 H 0.412 0.588 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.469 -6.739 1.784 7.787 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.440 5.440 2 C -0.212 4.212 3 Si 0.933 3.067 4 H -0.190 1.190 5 H -0.185 1.185 6 H -0.190 1.190 7 C -0.575 4.575 8 H 0.081 0.919 9 C 0.046 3.954 10 C -0.240 4.240 11 C -0.132 4.132 12 C -0.239 4.239 13 C -0.175 4.175 14 C -0.055 4.055 15 O -0.241 6.241 16 C 0.120 3.880 17 O -0.424 6.424 18 H 0.094 0.906 19 H 0.113 0.887 20 H 0.138 0.862 21 H 0.147 0.853 22 H 0.146 0.854 23 H 0.136 0.864 24 H 0.075 0.925 25 H 0.265 0.735 Dipole moment (debyes) X Y Z Total from point charges 3.209 -4.401 1.562 5.666 hybrid contribution 0.093 -2.561 0.299 2.580 sum 3.302 -6.962 1.861 7.927 Atomic orbital electron populations 1.70585 1.08731 1.32968 1.31680 1.28435 0.95705 1.07227 0.89784 0.83025 0.74813 0.69842 0.78975 1.19021 1.18459 1.19040 1.20479 1.03592 0.95435 1.37955 0.91867 1.17541 0.93789 0.91236 0.92815 1.20688 1.04009 0.97934 1.01344 1.20657 0.99787 0.92726 0.99982 1.20607 1.03057 0.96831 1.03389 1.21020 0.99742 0.96388 1.00325 1.19351 0.95556 0.94441 0.96194 1.86075 1.54198 1.28964 1.54827 1.23551 0.94026 0.81157 0.89273 1.86442 1.73086 1.35102 1.47749 0.90614 0.88653 0.86217 0.85325 0.85357 0.86402 0.92462 0.73487 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -45.86 12.32 21.83 0.27 -45.59 15 2 C 0.00 0.21 4.91 85.25 0.42 0.63 15 3 Si 1.12 45.70 30.01 68.60 2.06 47.76 15 4 H -0.27 -10.41 7.11 99.48 0.71 -9.70 15 5 H -0.26 -9.88 7.11 99.48 0.71 -9.17 15 6 H -0.27 -10.38 7.11 99.48 0.71 -9.67 15 7 C -0.55 -31.95 8.64 23.40 0.20 -31.75 15 8 H 0.06 3.76 7.72 -2.91 -0.02 3.74 15 9 C 0.05 2.83 5.30 -21.20 -0.11 2.71 15 10 C -0.22 -11.96 7.93 22.47 0.18 -11.78 15 11 C -0.11 -5.32 9.97 22.00 0.22 -5.10 15 12 C -0.22 -9.61 10.04 22.43 0.23 -9.39 15 13 C -0.16 -7.09 8.79 22.34 0.20 -6.90 15 14 C -0.01 -0.61 6.66 23.08 0.15 -0.46 15 15 O -0.32 -15.85 9.69 -66.79 -0.65 -16.49 15 16 C 0.23 7.75 7.35 113.37 0.83 8.59 15 17 O -0.61 -19.28 13.16 -126.21 -1.66 -20.94 15 18 H 0.28 16.46 6.78 -92.71 -0.63 15.83 15 19 H 0.10 5.35 6.52 -2.91 -0.02 5.33 15 20 H 0.12 4.82 8.06 -2.91 -0.02 4.80 15 21 H 0.13 4.62 8.06 -2.91 -0.02 4.60 15 22 H 0.13 4.91 5.87 -2.91 -0.02 4.89 15 23 H 0.12 2.98 8.14 -2.39 -0.02 2.96 15 24 H 0.06 1.69 6.69 -2.38 -0.02 1.67 15 25 H 0.41 7.01 9.12 -74.06 -0.68 6.34 15 Total: -1.00 -70.11 223.04 3.01 -67.10 By element: Atomic # 1 Polarization: 20.95 SS G_CDS: 0.68 Total: 21.62 kcal Atomic # 6 Polarization: -55.76 SS G_CDS: 2.31 Total: -53.45 kcal Atomic # 7 Polarization: -45.86 SS G_CDS: 0.27 Total: -45.59 kcal Atomic # 8 Polarization: -35.12 SS G_CDS: -2.31 Total: -37.43 kcal Atomic # 14 Polarization: 45.70 SS G_CDS: 2.06 Total: 47.76 kcal Total: -70.11 3.01 -67.10 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000584610357.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.127 kcal (2) G-P(sol) polarization free energy of solvation -70.105 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -102.232 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.009 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.096 kcal (6) G-S(sol) free energy of system = (1) + (5) -99.223 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds